Strain Fitness in Shewanella amazonensis SB2B around Sama_0856

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
1,041,114	+				+0.1
1,041,114	+				+2.5
1,041,114	+				+0.4
1,041,114	+				+0.3
1,041,115	-				+0.6
1,041,115	-				+0.4
1,041,115	-				-1.8
1,041,845	-				-0.7
1,041,845	-				-2.5
1,041,845	-				-1.7
1,041,846	+				-1.1
1,041,846	+				+0.1
1,041,847	-				-2.0
1,041,847	-				-1.2
1,041,887	+				-0.1
1,041,972	+				+0.8
1,041,972	+				-0.2
1,041,973	-				-1.5
1,042,422	+	gltD	Sama_0856	0.33	+0.8
1,042,530	+	gltD	Sama_0856	0.41	-0.1
1,042,530	+	gltD	Sama_0856	0.41	-0.2
1,042,530	+	gltD	Sama_0856	0.41	+0.9
1,042,531	-	gltD	Sama_0856	0.41	-1.5
1,042,531	-	gltD	Sama_0856	0.41	+0.0
1,042,531	-	gltD	Sama_0856	0.41	+1.2
1,042,598	+	gltD	Sama_0856	0.46	-2.2
1,042,598	+	gltD	Sama_0856	0.46	-0.7
1,042,598	+	gltD	Sama_0856	0.46	+0.9
1,042,599	-	gltD	Sama_0856	0.46	-0.8
1,042,599	-	gltD	Sama_0856	0.46	-1.0
1,042,647	+	gltD	Sama_0856	0.49	-0.4
1,042,647	+	gltD	Sama_0856	0.49	-1.2
1,042,648	-	gltD	Sama_0856	0.49	-0.1
1,042,648	-	gltD	Sama_0856	0.49	-0.5
1,042,648	-	gltD	Sama_0856	0.49	-1.6
1,042,667	+	gltD	Sama_0856	0.51	-2.5
1,042,668	-	gltD	Sama_0856	0.51	+1.8
1,042,677	+	gltD	Sama_0856	0.51	-1.0
1,042,678	-	gltD	Sama_0856	0.51	+1.1
1,042,678	-	gltD	Sama_0856	0.51	+0.6
1,042,786	+	gltD	Sama_0856	0.59	+0.9
1,042,797	-	gltD	Sama_0856	0.60	-1.8
1,042,807	+	gltD	Sama_0856	0.60	+0.1
1,042,812	+	gltD	Sama_0856	0.61	+1.1
1,042,812	+	gltD	Sama_0856	0.61	+0.7
1,042,813	-	gltD	Sama_0856	0.61	-0.1
1,042,813	-	gltD	Sama_0856	0.61	+0.2
1,042,839	+	gltD	Sama_0856	0.63	-1.8
1,042,839	+	gltD	Sama_0856	0.63	-2.4
1,042,951	+	gltD	Sama_0856	0.71	-2.9
1,042,952	-	gltD	Sama_0856	0.71	-0.6
1,042,952	-	gltD	Sama_0856	0.71	+0.7
1,042,957	+	gltD	Sama_0856	0.71	-1.6
1,042,958	-	gltD	Sama_0856	0.71	+0.4
1,042,958	-	gltD	Sama_0856	0.71	+0.0
1,042,958	-	gltD	Sama_0856	0.71	-0.4
1,042,988	-	gltD	Sama_0856	0.73	+0.7
1,042,998	+	gltD	Sama_0856	0.74	-2.4
1,042,998	+	gltD	Sama_0856	0.74	+0.1
1,042,998	+	gltD	Sama_0856	0.74	-0.4
1,042,998	+	gltD	Sama_0856	0.74	+0.7
1,042,998	+	gltD	Sama_0856	0.74	-0.0
1,042,998	+	gltD	Sama_0856	0.74	+0.5
1,042,998	+	gltD	Sama_0856	0.74	-0.3
1,042,999	-	gltD	Sama_0856	0.74	+1.0
1,042,999	-	gltD	Sama_0856	0.74	-1.6
1,043,011	+	gltD	Sama_0856	0.75	+2.0
1,043,011	+	gltD	Sama_0856	0.75	-0.4
1,043,011	+	gltD	Sama_0856	0.75	+1.5
1,043,011	+	gltD	Sama_0856	0.75	-0.8
1,043,011	+	gltD	Sama_0856	0.75	-0.7
1,043,012	-	gltD	Sama_0856	0.75	-0.3
1,043,012	-	gltD	Sama_0856	0.75	-0.2
1,043,012	-	gltD	Sama_0856	0.75	+1.1
1,043,012	-	gltD	Sama_0856	0.75	-0.1
1,043,012	-	gltD	Sama_0856	0.75	-0.3
1,043,012	-	gltD	Sama_0856	0.75	+0.3
1,043,012	-	gltD	Sama_0856	0.75	-0.5
1,043,015	+	gltD	Sama_0856	0.75	-0.7
1,043,015	+	gltD	Sama_0856	0.75	-1.2
1,043,015	+	gltD	Sama_0856	0.75	-1.0
1,043,015	+	gltD	Sama_0856	0.75	-0.1
1,043,016	-	gltD	Sama_0856	0.75	-1.9
1,043,016	-	gltD	Sama_0856	0.75	-1.9
1,043,016	-	gltD	Sama_0856	0.75	-1.1
1,043,016	-	gltD	Sama_0856	0.75	+0.5
1,043,016	-	gltD	Sama_0856	0.75	-0.7
1,043,048	-	gltD	Sama_0856	0.77	-1.3
1,043,181	+	gltD	Sama_0856	0.87	-0.7
1,043,181	+	gltD	Sama_0856	0.87	-2.1
1,043,181	+	gltD	Sama_0856	0.87	+1.2
1,043,181	+	gltD	Sama_0856	0.87	+0.1
1,043,181	+	gltD	Sama_0856	0.87	-1.3
1,043,181	+	gltD	Sama_0856	0.87	+0.9
1,043,182	-	gltD	Sama_0856	0.87	+0.9
1,043,182	-	gltD	Sama_0856	0.87	-1.1
1,043,182	-	gltD	Sama_0856	0.87	+1.0
1,043,182	-	gltD	Sama_0856	0.87	+0.8
1,043,182	-	gltD	Sama_0856	0.87	+0.2
1,043,211	+	gltD	Sama_0856	0.89	-1.1
1,043,211	+	gltD	Sama_0856	0.89	-0.8
1,043,211	+	gltD	Sama_0856	0.89	-0.9
1,043,267	-				-0.1
1,043,278	-				+0.3
1,043,308	+				-1.9
1,043,348	-				+2.8
1,043,439	+				+1.1
1,043,439	+				-0.4
1,043,439	+				+0.5
1,043,439	+				-1.5
1,043,440	-				-0.1
1,043,481	-				-0.8
1,043,481	-				+0.9
1,043,541	+				+1.3
1,043,542	-				-1.1
1,043,542	-				+1.1
1,043,647	+				+0.5
1,043,647	+				-0.2
1,043,648	-				+1.3
1,043,700	+				-0.2
1,043,701	-				+0.4
1,043,701	-				+0.2
1,043,723	+				-0.1
1,043,723	+				-0.1
1,043,723	+				-0.3
1,043,723	+				-1.6
1,043,723	+				-1.7
1,043,724	-				-1.7
1,043,724	-				+0.4
1,043,724	-				+0.0
1,043,724	-				-0.2
1,043,724	-				+1.4
1,043,725	+				-0.7
1,043,725	+				-0.6
1,043,725	+				-2.1
1,043,726	-				+0.1
1,043,726	-				-0.2
1,043,726	-				-0.1
1,043,754	+				+1.0
1,043,754	+				+0.5
1,043,755	-				-0.5
1,043,755	-				+0.0
1,043,755	-				-0.6
1,043,755	-				+1.2
1,043,755	-				-0.4
1,043,755	-				+0.0
1,043,849	+	gltB	Sama_0857	0.11	+0.3
1,043,850	-	gltB	Sama_0857	0.11	-0.9
1,043,850	-	gltB	Sama_0857	0.11	+1.1
1,043,902	+	gltB	Sama_0857	0.12	-1.9
1,043,902	+	gltB	Sama_0857	0.12	-0.3
1,043,903	-	gltB	Sama_0857	0.12	-0.4
1,043,941	+	gltB	Sama_0857	0.13	-0.3
1,043,941	+	gltB	Sama_0857	0.13	-0.3
1,043,941	+	gltB	Sama_0857	0.13	-1.3
1,043,941	+	gltB	Sama_0857	0.13	+0.7
1,043,941	+	gltB	Sama_0857	0.13	+0.3
1,043,941	+	gltB	Sama_0857	0.13	+1.5
1,043,942	-	gltB	Sama_0857	0.13	-0.5
1,043,942	-	gltB	Sama_0857	0.13	+0.2
1,043,942	-	gltB	Sama_0857	0.13	+1.1
1,043,942	-	gltB	Sama_0857	0.13	+0.9
1,044,125	-	gltB	Sama_0857	0.17	+0.1
1,044,216	+	gltB	Sama_0857	0.19	+0.7
1,044,217	-	gltB	Sama_0857	0.19	-1.3
1,044,217	-	gltB	Sama_0857	0.19	+0.2
1,044,249	+	gltB	Sama_0857	0.20	-0.1
1,044,249	+	gltB	Sama_0857	0.20	-2.3
1,044,250	-	gltB	Sama_0857	0.20	+1.0
1,044,250	-	gltB	Sama_0857	0.20	+0.2
1,044,263	-	gltB	Sama_0857	0.20	-1.8
1,044,263	-	gltB	Sama_0857	0.20	-1.1
1,044,263	-	gltB	Sama_0857	0.20	-0.3
1,044,319	+	gltB	Sama_0857	0.21	-1.6
1,044,320	-	gltB	Sama_0857	0.21	+0.3
1,044,320	-	gltB	Sama_0857	0.21	+1.0
1,044,320	-	gltB	Sama_0857	0.21	-1.5
1,044,320	-	gltB	Sama_0857	0.21	+0.3
1,044,340	-	gltB	Sama_0857	0.22	-0.6