Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0797 and Sama_0798 are separated by 159 nucleotides Sama_0798 and Sama_0799 are separated by 3 nucleotides Sama_0799 and Sama_0800 are separated by 21 nucleotides Sama_0800 and Sama_0801 are separated by 7 nucleotides
Sama_0797: Sama_0797 - hypothetical protein (RefSeq), at 982,393 to 983,451
_0797
Sama_0798: Sama_0798 - hypothetical protein (RefSeq), at 983,611 to 984,123
_0798
Sama_0799: Sama_0799 - hypothetical protein (RefSeq), at 984,127 to 984,378
_0799
Sama_0800: Sama_0800 - hypothetical protein (RefSeq), at 984,400 to 984,750
_0800
Sama_0801: Sama_0801 - acetyltransferase (RefSeq), at 984,758 to 985,237
_0801
Position (kb) 983
984
985 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 983.452 kb on + strand at 983.452 kb on + strand at 983.452 kb on + strand at 983.452 kb on + strand at 983.453 kb on - strand at 983.453 kb on - strand at 983.482 kb on + strand at 983.483 kb on - strand at 983.483 kb on - strand at 983.518 kb on + strand at 983.518 kb on + strand at 983.563 kb on - strand at 983.563 kb on - strand at 983.563 kb on - strand at 983.563 kb on - strand at 983.579 kb on - strand at 983.594 kb on + strand at 983.595 kb on - strand at 983.595 kb on - strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.597 kb on + strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.598 kb on - strand at 983.603 kb on + strand at 983.603 kb on + strand at 983.603 kb on + strand at 983.604 kb on - strand at 983.604 kb on - strand at 983.604 kb on - strand at 983.604 kb on - strand at 983.619 kb on + strand at 983.619 kb on + strand at 983.659 kb on + strand at 983.659 kb on + strand at 983.659 kb on + strand at 983.660 kb on - strand at 983.660 kb on - strand at 983.685 kb on + strand, within Sama_0798 at 983.686 kb on - strand, within Sama_0798 at 983.752 kb on + strand, within Sama_0798 at 983.752 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.867 kb on + strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.868 kb on - strand, within Sama_0798 at 983.891 kb on - strand, within Sama_0798 at 983.891 kb on - strand, within Sama_0798 at 984.010 kb on + strand, within Sama_0798 at 984.011 kb on - strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.048 kb on + strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.049 kb on - strand, within Sama_0798 at 984.056 kb on + strand, within Sama_0798 at 984.056 kb on + strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.057 kb on - strand, within Sama_0798 at 984.123 kb on + strand at 984.124 kb on - strand at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.299 kb on + strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.300 kb on - strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.303 kb on + strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.304 kb on - strand, within Sama_0799 at 984.311 kb on + strand, within Sama_0799 at 984.311 kb on + strand, within Sama_0799 at 984.311 kb on + strand, within Sama_0799 at 984.312 kb on - strand, within Sama_0799 at 984.312 kb on - strand, within Sama_0799 at 984.351 kb on + strand, within Sama_0799 at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.353 kb on + strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.354 kb on - strand at 984.359 kb on + strand at 984.359 kb on + strand at 984.359 kb on + strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.360 kb on - strand at 984.381 kb on + strand at 984.381 kb on + strand at 984.402 kb on - strand at 984.428 kb on + strand at 984.428 kb on + strand at 984.428 kb on + strand at 984.429 kb on - strand at 984.429 kb on - strand at 984.445 kb on - strand, within Sama_0800 at 984.445 kb on - strand, within Sama_0800 at 984.464 kb on + strand, within Sama_0800 at 984.465 kb on - strand, within Sama_0800 at 984.491 kb on + strand, within Sama_0800 at 984.491 kb on + strand, within Sama_0800 at 984.492 kb on - strand, within Sama_0800 at 984.497 kb on + strand, within Sama_0800 at 984.566 kb on - strand, within Sama_0800 at 984.572 kb on + strand, within Sama_0800 at 984.572 kb on + strand, within Sama_0800 at 984.592 kb on + strand, within Sama_0800 at 984.605 kb on + strand, within Sama_0800 at 984.606 kb on - strand, within Sama_0800 at 984.606 kb on - strand, within Sama_0800 at 984.606 kb on - strand, within Sama_0800 at 984.619 kb on + strand, within Sama_0800 at 984.619 kb on + strand, within Sama_0800 at 984.620 kb on - strand, within Sama_0800 at 984.620 kb on - strand, within Sama_0800 at 984.646 kb on + strand, within Sama_0800 at 984.658 kb on - strand, within Sama_0800 at 984.658 kb on - strand, within Sama_0800 at 984.684 kb on - strand, within Sama_0800 at 984.684 kb on - strand, within Sama_0800 at 984.699 kb on + strand, within Sama_0800 at 984.699 kb on + strand, within Sama_0800 at 984.700 kb on - strand, within Sama_0800 at 984.700 kb on - strand, within Sama_0800 at 984.700 kb on - strand, within Sama_0800 at 984.700 kb on - strand, within Sama_0800 at 984.705 kb on + strand, within Sama_0800 at 984.706 kb on - strand, within Sama_0800 at 984.706 kb on - strand, within Sama_0800 at 984.750 kb on + strand at 984.750 kb on + strand at 984.750 kb on + strand at 984.750 kb on + strand at 984.751 kb on - strand at 984.751 kb on - strand at 984.751 kb on - strand at 984.751 kb on - strand at 984.751 kb on - strand at 984.751 kb on - strand at 984.771 kb on - strand at 984.771 kb on - strand at 984.771 kb on - strand at 984.775 kb on + strand at 984.775 kb on + strand at 984.775 kb on + strand at 984.775 kb on + strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.776 kb on - strand at 984.777 kb on + strand at 984.777 kb on + strand at 984.777 kb on + strand at 984.777 kb on + strand at 984.777 kb on + strand at 984.777 kb on + strand at 984.777 kb on + strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.778 kb on - strand at 984.795 kb on + strand at 984.795 kb on + strand at 984.796 kb on - strand at 984.796 kb on - strand at 984.796 kb on - strand at 984.849 kb on + strand, within Sama_0801 at 984.849 kb on + strand, within Sama_0801 at 984.850 kb on - strand, within Sama_0801 at 984.987 kb on + strand, within Sama_0801 at 984.988 kb on - strand, within Sama_0801 at 984.988 kb on - strand, within Sama_0801 at 984.988 kb on - strand, within Sama_0801 at 984.995 kb on - strand, within Sama_0801 at 985.026 kb on + strand, within Sama_0801 at 985.026 kb on + strand, within Sama_0801 at 985.027 kb on - strand, within Sama_0801 at 985.027 kb on - strand, within Sama_0801 at 985.027 kb on - strand, within Sama_0801 at 985.027 kb on - strand, within Sama_0801 at 985.101 kb on - strand, within Sama_0801
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 983,452 + -2.8 983,452 + +1.4 983,452 + -0.8 983,452 + +0.4 983,453 - -0.7 983,453 - -0.2 983,482 + +0.2 983,483 - -0.3 983,483 - +1.1 983,518 + -0.8 983,518 + +1.5 983,563 - -0.2 983,563 - -0.8 983,563 - -0.8 983,563 - -1.4 983,579 - -1.1 983,594 + +0.1 983,595 - +0.8 983,595 - -1.0 983,597 + -0.6 983,597 + -1.1 983,597 + +1.3 983,597 + +0.2 983,597 + -1.6 983,598 - -0.9 983,598 - -1.0 983,598 - +0.7 983,603 + -0.1 983,603 + -1.1 983,603 + -0.5 983,604 - -2.4 983,604 - +0.7 983,604 - -1.3 983,604 - +1.1 983,619 + -0.1 983,619 + -1.5 983,659 + -0.6 983,659 + +0.4 983,659 + -1.1 983,660 - -0.3 983,660 - -0.7 983,685 + Sama_0798 0.14 +0.1 983,686 - Sama_0798 0.15 -2.5 983,752 + Sama_0798 0.27 -2.0 983,752 + Sama_0798 0.27 -2.3 983,867 + Sama_0798 0.50 -1.9 983,867 + Sama_0798 0.50 -0.3 983,867 + Sama_0798 0.50 -2.6 983,867 + Sama_0798 0.50 -0.9 983,868 - Sama_0798 0.50 -1.4 983,868 - Sama_0798 0.50 -0.9 983,868 - Sama_0798 0.50 -0.5 983,868 - Sama_0798 0.50 -1.8 983,891 - Sama_0798 0.55 -1.0 983,891 - Sama_0798 0.55 -1.5 984,010 + Sama_0798 0.78 +0.1 984,011 - Sama_0798 0.78 -2.4 984,048 + Sama_0798 0.85 -2.2 984,048 + Sama_0798 0.85 -1.8 984,048 + Sama_0798 0.85 -0.4 984,048 + Sama_0798 0.85 -1.3 984,048 + Sama_0798 0.85 -0.5 984,048 + Sama_0798 0.85 -1.7 984,048 + Sama_0798 0.85 -2.0 984,048 + Sama_0798 0.85 -1.5 984,048 + Sama_0798 0.85 +0.9 984,049 - Sama_0798 0.85 -2.5 984,049 - Sama_0798 0.85 -1.8 984,049 - Sama_0798 0.85 -0.5 984,049 - Sama_0798 0.85 -0.8 984,049 - Sama_0798 0.85 -1.2 984,049 - Sama_0798 0.85 -3.4 984,049 - Sama_0798 0.85 -0.0 984,049 - Sama_0798 0.85 -1.5 984,049 - Sama_0798 0.85 -0.5 984,049 - Sama_0798 0.85 -3.8 984,049 - Sama_0798 0.85 -1.9 984,049 - Sama_0798 0.85 -1.9 984,056 + Sama_0798 0.87 -1.6 984,056 + Sama_0798 0.87 -2.0 984,057 - Sama_0798 0.87 -1.5 984,057 - Sama_0798 0.87 -1.0 984,057 - Sama_0798 0.87 -2.5 984,057 - Sama_0798 0.87 -3.2 984,123 + -0.3 984,124 - -1.5 984,299 + Sama_0799 0.68 -0.5 984,299 + Sama_0799 0.68 -2.4 984,299 + Sama_0799 0.68 -0.5 984,299 + Sama_0799 0.68 -0.3 984,299 + Sama_0799 0.68 -1.6 984,300 - Sama_0799 0.69 +0.3 984,300 - Sama_0799 0.69 -0.3 984,300 - Sama_0799 0.69 -0.2 984,300 - Sama_0799 0.69 -1.8 984,300 - Sama_0799 0.69 -0.5 984,300 - Sama_0799 0.69 +0.3 984,300 - Sama_0799 0.69 -0.1 984,303 + Sama_0799 0.70 -1.0 984,303 + Sama_0799 0.70 +0.5 984,303 + Sama_0799 0.70 -0.8 984,303 + Sama_0799 0.70 -0.9 984,304 - Sama_0799 0.70 +0.7 984,304 - Sama_0799 0.70 +0.5 984,304 - Sama_0799 0.70 -0.8 984,304 - Sama_0799 0.70 -1.3 984,311 + Sama_0799 0.73 -0.5 984,311 + Sama_0799 0.73 -2.8 984,311 + Sama_0799 0.73 +0.5 984,312 - Sama_0799 0.73 -1.6 984,312 - Sama_0799 0.73 -0.0 984,351 + Sama_0799 0.89 -1.2 984,353 + -0.5 984,353 + +0.5 984,353 + -1.4 984,353 + -1.9 984,353 + -0.0 984,353 + -1.9 984,353 + +0.4 984,353 + -1.0 984,354 - +0.5 984,354 - -0.7 984,354 - -1.6 984,354 - -0.1 984,354 - -1.0 984,354 - -1.0 984,359 + -2.5 984,359 + -1.6 984,359 + -0.3 984,360 - +0.8 984,360 - +1.1 984,360 - -0.8 984,360 - -2.0 984,360 - +0.1 984,360 - +0.5 984,360 - -0.9 984,360 - -0.8 984,360 - -0.6 984,360 - +0.9 984,381 + -0.8 984,381 + -0.7 984,402 - +1.1 984,428 + -0.1 984,428 + +0.4 984,428 + -1.2 984,429 - -0.9 984,429 - -0.2 984,445 - Sama_0800 0.13 +0.8 984,445 - Sama_0800 0.13 +1.2 984,464 + Sama_0800 0.18 -0.8 984,465 - Sama_0800 0.19 -0.0 984,491 + Sama_0800 0.26 -0.8 984,491 + Sama_0800 0.26 -1.1 984,492 - Sama_0800 0.26 -0.5 984,497 + Sama_0800 0.28 -1.6 984,566 - Sama_0800 0.47 -0.6 984,572 + Sama_0800 0.49 -0.5 984,572 + Sama_0800 0.49 -1.0 984,592 + Sama_0800 0.55 +0.8 984,605 + Sama_0800 0.58 -0.0 984,606 - Sama_0800 0.59 -0.5 984,606 - Sama_0800 0.59 -0.0 984,606 - Sama_0800 0.59 +0.2 984,619 + Sama_0800 0.62 -1.3 984,619 + Sama_0800 0.62 -1.0 984,620 - Sama_0800 0.63 +1.5 984,620 - Sama_0800 0.63 -0.8 984,646 + Sama_0800 0.70 +0.2 984,658 - Sama_0800 0.74 +1.0 984,658 - Sama_0800 0.74 -1.9 984,684 - Sama_0800 0.81 -1.3 984,684 - Sama_0800 0.81 +0.0 984,699 + Sama_0800 0.85 -1.9 984,699 + Sama_0800 0.85 -2.6 984,700 - Sama_0800 0.85 +1.7 984,700 - Sama_0800 0.85 -2.5 984,700 - Sama_0800 0.85 -1.8 984,700 - Sama_0800 0.85 +0.4 984,705 + Sama_0800 0.87 +0.1 984,706 - Sama_0800 0.87 +0.1 984,706 - Sama_0800 0.87 +0.8 984,750 + -0.2 984,750 + -2.0 984,750 + +0.5 984,750 + -1.6 984,751 - -0.2 984,751 - -1.5 984,751 - -0.1 984,751 - -2.3 984,751 - +0.6 984,751 - -1.1 984,771 - -0.6 984,771 - +0.5 984,771 - +1.1 984,775 + -1.4 984,775 + -0.2 984,775 + -0.3 984,775 + -1.6 984,776 - +0.2 984,776 - -1.8 984,776 - +0.9 984,776 - -2.7 984,776 - -1.6 984,776 - -1.0 984,776 - -0.3 984,776 - +0.9 984,776 - -0.5 984,777 + -1.0 984,777 + -0.9 984,777 + +0.1 984,777 + +0.4 984,777 + +0.1 984,777 + -0.6 984,777 + -1.5 984,778 - -1.0 984,778 - +0.0 984,778 - -1.5 984,778 - +1.0 984,778 - +2.0 984,778 - -0.0 984,778 - +0.5 984,778 - -1.5 984,778 - -1.7 984,795 + +0.0 984,795 + -0.8 984,796 - -0.8 984,796 - +0.3 984,796 - +0.5 984,849 + Sama_0801 0.19 -2.6 984,849 + Sama_0801 0.19 -1.9 984,850 - Sama_0801 0.19 -1.0 984,987 + Sama_0801 0.48 +0.3 984,988 - Sama_0801 0.48 +0.8 984,988 - Sama_0801 0.48 -0.8 984,988 - Sama_0801 0.48 +1.1 984,995 - Sama_0801 0.49 +0.2 985,026 + Sama_0801 0.56 -1.0 985,026 + Sama_0801 0.56 -0.3 985,027 - Sama_0801 0.56 +0.4 985,027 - Sama_0801 0.56 -1.2 985,027 - Sama_0801 0.56 -0.2 985,027 - Sama_0801 0.56 +0.2 985,101 - Sama_0801 0.71 -0.2
Or see this region's nucleotide sequence