Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobT and Sama_0763 are separated by 13 nucleotides Sama_0763 and Sama_0764 overlap by 4 nucleotides Sama_0764 and Sama_0765 are separated by 3 nucleotides
Sama_0762: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 945,129 to 946,163
cobT
Sama_0763: Sama_0763 - cobalamin 5'-phosphate synthase (RefSeq), at 946,177 to 946,959
_0763
Sama_0764: Sama_0764 - cobinamide kinase/cobinamide phosphate guanylyltransferase (RefSeq), at 946,956 to 947,501
_0764
Sama_0765: Sama_0765 - cobyric acid synthase (RefSeq), at 947,505 to 949,013
_0765
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 945.191 kb on + strand at 945.192 kb on - strand at 945.192 kb on - strand at 945.295 kb on + strand, within cobT at 945.295 kb on + strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.314 kb on + strand, within cobT at 945.315 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.353 kb on - strand, within cobT at 945.449 kb on + strand, within cobT at 945.449 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.737 kb on + strand, within cobT at 945.738 kb on - strand, within cobT at 945.785 kb on + strand, within cobT at 945.785 kb on + strand, within cobT at 945.786 kb on - strand, within cobT at 945.902 kb on + strand, within cobT at 945.903 kb on - strand, within cobT at 945.903 kb on - strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.958 kb on - strand, within cobT at 945.958 kb on - strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.030 kb on + strand, within cobT at 946.044 kb on - strand, within cobT at 946.061 kb on + strand at 946.062 kb on - strand at 946.062 kb on - strand at 946.062 kb on + strand at 946.110 kb on + strand at 946.111 kb on - strand at 946.145 kb on + strand at 946.153 kb on + strand at 946.154 kb on - strand at 946.154 kb on - strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.188 kb on + strand at 946.230 kb on + strand at 946.250 kb on + strand at 946.262 kb on - strand, within Sama_0763 at 946.278 kb on - strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.486 kb on - strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.629 kb on + strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.635 kb on - strand, within Sama_0763 at 946.656 kb on + strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.749 kb on - strand, within Sama_0763 at 946.808 kb on + strand, within Sama_0763 at 946.809 kb on - strand, within Sama_0763 at 946.875 kb on + strand, within Sama_0763 at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.925 kb on - strand at 946.925 kb on - strand at 946.937 kb on + strand at 946.938 kb on - strand at 946.938 kb on - strand at 946.938 kb on - strand at 947.043 kb on + strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764 at 947.206 kb on + strand, within Sama_0764 at 947.206 kb on + strand, within Sama_0764 at 947.206 kb on + strand, within Sama_0764 at 947.207 kb on - strand, within Sama_0764 at 947.207 kb on - strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.473 kb on + strand at 947.473 kb on + strand at 947.500 kb on - strand at 947.500 kb on - strand at 947.500 kb on - strand at 947.504 kb on + strand at 947.504 kb on + strand at 947.504 kb on + strand at 947.504 kb on + strand at 947.516 kb on + strand at 947.630 kb on + strand at 947.631 kb on - strand at 947.631 kb on - strand at 947.631 kb on - strand at 947.672 kb on - strand, within Sama_0765 at 947.729 kb on + strand, within Sama_0765 at 947.730 kb on - strand, within Sama_0765 at 947.737 kb on + strand, within Sama_0765 at 947.738 kb on - strand, within Sama_0765 at 947.738 kb on - strand, within Sama_0765 at 947.779 kb on + strand, within Sama_0765 at 947.779 kb on + strand, within Sama_0765 at 947.779 kb on + strand, within Sama_0765 at 947.841 kb on + strand, within Sama_0765 at 947.841 kb on + strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.877 kb on + strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.905 kb on - strand, within Sama_0765
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 945,191 + +0.7 945,192 - -0.2 945,192 - -1.0 945,295 + cobT Sama_0762 0.16 -0.4 945,295 + cobT Sama_0762 0.16 +0.6 945,296 - cobT Sama_0762 0.16 -0.2 945,296 - cobT Sama_0762 0.16 +0.6 945,296 - cobT Sama_0762 0.16 -2.1 945,314 + cobT Sama_0762 0.18 -0.0 945,315 - cobT Sama_0762 0.18 +0.7 945,332 - cobT Sama_0762 0.20 -1.1 945,332 - cobT Sama_0762 0.20 -0.4 945,353 - cobT Sama_0762 0.22 +0.2 945,449 + cobT Sama_0762 0.31 +0.3 945,449 + cobT Sama_0762 0.31 -0.9 945,644 + cobT Sama_0762 0.50 -1.1 945,644 + cobT Sama_0762 0.50 -0.8 945,644 + cobT Sama_0762 0.50 +0.7 945,645 - cobT Sama_0762 0.50 +0.7 945,645 - cobT Sama_0762 0.50 +0.7 945,645 - cobT Sama_0762 0.50 -1.0 945,645 - cobT Sama_0762 0.50 -0.7 945,645 - cobT Sama_0762 0.50 -1.0 945,645 - cobT Sama_0762 0.50 -1.2 945,737 + cobT Sama_0762 0.59 +0.1 945,738 - cobT Sama_0762 0.59 -0.2 945,785 + cobT Sama_0762 0.63 -1.3 945,785 + cobT Sama_0762 0.63 -3.0 945,786 - cobT Sama_0762 0.63 -0.0 945,902 + cobT Sama_0762 0.75 -1.0 945,903 - cobT Sama_0762 0.75 -0.2 945,903 - cobT Sama_0762 0.75 +0.4 945,957 + cobT Sama_0762 0.80 -0.4 945,957 + cobT Sama_0762 0.80 +0.2 945,957 + cobT Sama_0762 0.80 -0.6 945,957 + cobT Sama_0762 0.80 -0.3 945,957 + cobT Sama_0762 0.80 +1.1 945,957 + cobT Sama_0762 0.80 -0.6 945,957 + cobT Sama_0762 0.80 -1.4 945,958 - cobT Sama_0762 0.80 +0.1 945,958 - cobT Sama_0762 0.80 +0.8 945,962 + cobT Sama_0762 0.80 -0.4 945,962 + cobT Sama_0762 0.80 +1.3 945,962 + cobT Sama_0762 0.80 +0.2 945,963 - cobT Sama_0762 0.81 -0.1 945,963 - cobT Sama_0762 0.81 +1.2 945,963 - cobT Sama_0762 0.81 -1.4 945,963 - cobT Sama_0762 0.81 +0.6 945,963 - cobT Sama_0762 0.81 +0.9 946,013 + cobT Sama_0762 0.85 -0.3 946,013 + cobT Sama_0762 0.85 +0.2 946,013 + cobT Sama_0762 0.85 +0.1 946,013 + cobT Sama_0762 0.85 +0.6 946,014 - cobT Sama_0762 0.86 +2.5 946,014 - cobT Sama_0762 0.86 +1.1 946,014 - cobT Sama_0762 0.86 -1.4 946,030 + cobT Sama_0762 0.87 -0.1 946,044 - cobT Sama_0762 0.88 +1.0 946,061 + -0.8 946,062 - +0.3 946,062 - +1.9 946,062 + +0.8 946,110 + -0.3 946,111 - +0.3 946,145 + +1.2 946,153 + +1.1 946,154 - +2.9 946,154 - +0.4 946,176 + +1.3 946,176 + +1.0 946,176 + +0.9 946,176 + +0.1 946,176 + -1.8 946,177 - +0.6 946,177 - +1.6 946,177 - +0.4 946,177 - +0.7 946,177 - +2.3 946,177 - -0.6 946,177 - +1.9 946,177 - -0.3 946,177 - +0.3 946,188 + +0.1 946,230 + +0.2 946,250 + +1.1 946,262 - Sama_0763 0.11 +0.9 946,278 - Sama_0763 0.13 +0.5 946,294 + Sama_0763 0.15 +0.6 946,294 + Sama_0763 0.15 +0.8 946,294 + Sama_0763 0.15 +1.6 946,359 + Sama_0763 0.23 +0.3 946,359 + Sama_0763 0.23 +0.8 946,485 + Sama_0763 0.39 -0.6 946,485 + Sama_0763 0.39 -0.1 946,485 + Sama_0763 0.39 +1.6 946,485 + Sama_0763 0.39 +0.7 946,485 + Sama_0763 0.39 +0.9 946,486 - Sama_0763 0.39 +1.8 946,522 + Sama_0763 0.44 +1.0 946,522 + Sama_0763 0.44 -1.9 946,523 - Sama_0763 0.44 -0.2 946,523 - Sama_0763 0.44 +1.1 946,629 + Sama_0763 0.58 +1.0 946,630 - Sama_0763 0.58 -0.4 946,630 - Sama_0763 0.58 +0.6 946,634 + Sama_0763 0.58 +1.3 946,634 + Sama_0763 0.58 +1.9 946,635 - Sama_0763 0.58 +0.4 946,656 + Sama_0763 0.61 +2.2 946,657 - Sama_0763 0.61 +1.0 946,657 - Sama_0763 0.61 +1.5 946,671 + Sama_0763 0.63 +2.0 946,671 + Sama_0763 0.63 +0.1 946,671 + Sama_0763 0.63 +0.5 946,671 + Sama_0763 0.63 +1.0 946,671 + Sama_0763 0.63 +0.9 946,671 + Sama_0763 0.63 +1.4 946,671 + Sama_0763 0.63 +2.1 946,671 + Sama_0763 0.63 -0.1 946,671 + Sama_0763 0.63 +1.6 946,671 + Sama_0763 0.63 +3.1 946,672 - Sama_0763 0.63 -0.0 946,672 - Sama_0763 0.63 +1.4 946,672 - Sama_0763 0.63 +0.6 946,672 - Sama_0763 0.63 +0.3 946,675 + Sama_0763 0.64 +1.7 946,675 + Sama_0763 0.64 +0.7 946,675 + Sama_0763 0.64 +1.6 946,675 + Sama_0763 0.64 +1.3 946,675 + Sama_0763 0.64 +2.3 946,675 + Sama_0763 0.64 +1.0 946,675 + Sama_0763 0.64 +1.1 946,675 + Sama_0763 0.64 +0.7 946,676 - Sama_0763 0.64 -0.8 946,676 - Sama_0763 0.64 +0.5 946,676 - Sama_0763 0.64 -1.4 946,676 - Sama_0763 0.64 +0.6 946,676 - Sama_0763 0.64 -0.8 946,676 - Sama_0763 0.64 +1.2 946,676 - Sama_0763 0.64 +1.0 946,676 - Sama_0763 0.64 +0.2 946,749 - Sama_0763 0.73 +0.7 946,808 + Sama_0763 0.81 -1.6 946,809 - Sama_0763 0.81 +1.8 946,875 + Sama_0763 0.89 +1.5 946,924 + -0.1 946,924 + +0.5 946,924 + +1.5 946,924 + +0.1 946,924 + -0.2 946,924 + -0.2 946,925 - +0.6 946,925 - +1.4 946,937 + +0.3 946,938 - +1.5 946,938 - +1.5 946,938 - +0.4 947,043 + Sama_0764 0.16 -1.5 947,044 - Sama_0764 0.16 -2.0 947,044 - Sama_0764 0.16 -0.5 947,206 + Sama_0764 0.46 +1.4 947,206 + Sama_0764 0.46 -0.9 947,206 + Sama_0764 0.46 -0.8 947,207 - Sama_0764 0.46 -2.1 947,207 - Sama_0764 0.46 +0.1 947,347 + Sama_0764 0.72 +0.6 947,347 + Sama_0764 0.72 -1.8 947,347 + Sama_0764 0.72 -0.4 947,347 + Sama_0764 0.72 +0.7 947,348 - Sama_0764 0.72 -1.8 947,348 - Sama_0764 0.72 -0.9 947,348 - Sama_0764 0.72 +0.9 947,348 - Sama_0764 0.72 +0.2 947,348 - Sama_0764 0.72 -0.8 947,473 + -1.9 947,473 + +0.6 947,500 - -0.8 947,500 - +0.3 947,500 - +0.9 947,504 + +1.0 947,504 + -0.2 947,504 + +0.2 947,504 + -1.2 947,516 + +0.5 947,630 + -0.9 947,631 - +0.6 947,631 - +0.6 947,631 - +0.6 947,672 - Sama_0765 0.11 +0.6 947,729 + Sama_0765 0.15 -0.1 947,730 - Sama_0765 0.15 -0.8 947,737 + Sama_0765 0.15 -0.0 947,738 - Sama_0765 0.15 +0.2 947,738 - Sama_0765 0.15 +1.1 947,779 + Sama_0765 0.18 -0.4 947,779 + Sama_0765 0.18 -0.8 947,779 + Sama_0765 0.18 -0.0 947,841 + Sama_0765 0.22 -0.7 947,841 + Sama_0765 0.22 -0.0 947,842 - Sama_0765 0.22 +0.5 947,842 - Sama_0765 0.22 +0.8 947,842 - Sama_0765 0.22 +0.4 947,842 - Sama_0765 0.22 -0.0 947,877 + Sama_0765 0.25 -0.1 947,878 - Sama_0765 0.25 +0.1 947,878 - Sama_0765 0.25 +0.9 947,878 - Sama_0765 0.25 -0.8 947,878 - Sama_0765 0.25 -0.0 947,878 - Sama_0765 0.25 -1.9 947,905 - Sama_0765 0.27 -1.8
Or see this region's nucleotide sequence