Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0714 and Sama_0715 are separated by 56 nucleotides Sama_0715 and Sama_0716 are separated by 75 nucleotides Sama_0716 and Sama_0717 are separated by 85 nucleotides
Sama_0714: Sama_0714 - hypothetical protein (RefSeq), at 875,229 to 879,392
_0714
Sama_0715: Sama_0715 - hypothetical protein (RefSeq), at 879,449 to 879,919
_0715
Sama_0716: Sama_0716 - hypothetical protein (RefSeq), at 879,995 to 880,399
_0716
Sama_0717: Sama_0717 - hypothetical protein (RefSeq), at 880,485 to 882,251
_0717
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 878.528 kb on - strand, within Sama_0714 at 878.528 kb on - strand, within Sama_0714 at 878.562 kb on - strand, within Sama_0714 at 878.582 kb on + strand, within Sama_0714 at 878.582 kb on + strand, within Sama_0714 at 878.582 kb on + strand, within Sama_0714 at 878.583 kb on - strand, within Sama_0714 at 878.613 kb on - strand, within Sama_0714 at 878.613 kb on - strand, within Sama_0714 at 878.662 kb on + strand, within Sama_0714 at 878.662 kb on + strand, within Sama_0714 at 878.663 kb on - strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.732 kb on + strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.733 kb on - strand, within Sama_0714 at 878.734 kb on + strand, within Sama_0714 at 878.734 kb on + strand, within Sama_0714 at 878.734 kb on + strand, within Sama_0714 at 878.735 kb on - strand, within Sama_0714 at 878.735 kb on - strand, within Sama_0714 at 878.735 kb on - strand, within Sama_0714 at 878.792 kb on + strand, within Sama_0714 at 878.917 kb on - strand, within Sama_0714 at 878.955 kb on + strand, within Sama_0714 at 878.955 kb on + strand, within Sama_0714 at 878.984 kb on + strand at 878.984 kb on + strand at 878.984 kb on + strand at 878.984 kb on + strand at 878.985 kb on - strand at 878.985 kb on - strand at 878.985 kb on - strand at 878.985 kb on - strand at 878.987 kb on + strand at 878.987 kb on + strand at 878.987 kb on + strand at 878.988 kb on - strand at 879.008 kb on + strand at 879.009 kb on - strand at 879.022 kb on + strand at 879.022 kb on + strand at 879.022 kb on + strand at 879.023 kb on - strand at 879.054 kb on + strand at 879.055 kb on - strand at 879.072 kb on - strand at 879.131 kb on + strand at 879.165 kb on + strand at 879.166 kb on - strand at 879.166 kb on - strand at 879.168 kb on + strand at 879.168 kb on + strand at 879.168 kb on + strand at 879.168 kb on + strand at 879.169 kb on - strand at 879.314 kb on + strand at 879.315 kb on - strand at 879.319 kb on + strand at 879.319 kb on + strand at 879.329 kb on - strand at 879.394 kb on - strand at 879.438 kb on + strand at 879.438 kb on + strand at 879.438 kb on + strand at 879.439 kb on - strand at 879.448 kb on + strand at 879.448 kb on + strand at 879.448 kb on + strand at 879.449 kb on - strand at 879.449 kb on - strand at 879.551 kb on - strand, within Sama_0715 at 879.567 kb on + strand, within Sama_0715 at 879.567 kb on + strand, within Sama_0715 at 879.568 kb on - strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.635 kb on + strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.636 kb on - strand, within Sama_0715 at 879.675 kb on + strand, within Sama_0715 at 879.675 kb on + strand, within Sama_0715 at 879.676 kb on - strand, within Sama_0715 at 879.683 kb on + strand, within Sama_0715 at 879.683 kb on + strand, within Sama_0715 at 879.684 kb on - strand, within Sama_0715 at 879.759 kb on + strand, within Sama_0715 at 879.759 kb on + strand, within Sama_0715 at 879.760 kb on - strand, within Sama_0715 at 879.760 kb on - strand, within Sama_0715 at 879.809 kb on + strand, within Sama_0715 at 879.809 kb on + strand, within Sama_0715 at 879.810 kb on - strand, within Sama_0715 at 879.810 kb on - strand, within Sama_0715 at 879.847 kb on + strand, within Sama_0715 at 879.896 kb on + strand at 879.896 kb on + strand at 879.896 kb on + strand at 879.897 kb on - strand at 879.897 kb on - strand at 879.897 kb on - strand at 879.902 kb on + strand at 879.902 kb on + strand at 879.903 kb on - strand at 879.903 kb on - strand at 879.903 kb on - strand at 879.918 kb on - strand at 879.931 kb on + strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.933 kb on + strand at 879.947 kb on + strand at 879.950 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.007 kb on + strand at 880.008 kb on - strand at 880.202 kb on + strand, within Sama_0716 at 880.203 kb on - strand, within Sama_0716 at 880.203 kb on - strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.232 kb on + strand, within Sama_0716 at 880.233 kb on - strand, within Sama_0716 at 880.262 kb on + strand, within Sama_0716 at 880.263 kb on - strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.275 kb on + strand, within Sama_0716 at 880.276 kb on - strand, within Sama_0716 at 880.318 kb on + strand, within Sama_0716 at 880.319 kb on - strand, within Sama_0716 at 880.380 kb on + strand at 880.381 kb on - strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.391 kb on + strand at 880.392 kb on - strand at 880.392 kb on - strand at 880.422 kb on - strand at 880.422 kb on - strand at 880.422 kb on - strand at 880.440 kb on - strand at 880.445 kb on + strand at 880.445 kb on + strand at 880.446 kb on - strand at 880.446 kb on - strand at 880.471 kb on + strand at 880.472 kb on - strand at 880.472 kb on - strand at 880.500 kb on + strand at 880.528 kb on + strand at 880.528 kb on + strand at 880.529 kb on - strand at 880.571 kb on + strand at 880.572 kb on - strand at 880.667 kb on - strand, within Sama_0717 at 880.667 kb on - strand, within Sama_0717 at 880.768 kb on - strand, within Sama_0717 at 880.768 kb on - strand, within Sama_0717
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 878,528 - Sama_0714 0.79 -0.7 878,528 - Sama_0714 0.79 -1.3 878,562 - Sama_0714 0.80 -0.8 878,582 + Sama_0714 0.81 +0.4 878,582 + Sama_0714 0.81 -1.4 878,582 + Sama_0714 0.81 +0.7 878,583 - Sama_0714 0.81 -0.9 878,613 - Sama_0714 0.81 -1.2 878,613 - Sama_0714 0.81 +1.1 878,662 + Sama_0714 0.82 -0.1 878,662 + Sama_0714 0.82 -1.2 878,663 - Sama_0714 0.82 +0.4 878,732 + Sama_0714 0.84 -0.3 878,732 + Sama_0714 0.84 +0.8 878,732 + Sama_0714 0.84 -0.7 878,732 + Sama_0714 0.84 +0.4 878,733 - Sama_0714 0.84 -2.0 878,733 - Sama_0714 0.84 +1.0 878,733 - Sama_0714 0.84 -1.0 878,733 - Sama_0714 0.84 -0.1 878,734 + Sama_0714 0.84 -1.0 878,734 + Sama_0714 0.84 +0.3 878,734 + Sama_0714 0.84 -1.0 878,735 - Sama_0714 0.84 -0.8 878,735 - Sama_0714 0.84 +0.0 878,735 - Sama_0714 0.84 -0.6 878,792 + Sama_0714 0.86 -0.7 878,917 - Sama_0714 0.89 +0.9 878,955 + Sama_0714 0.89 -2.1 878,955 + Sama_0714 0.89 -0.4 878,984 + +0.3 878,984 + -0.7 878,984 + -0.7 878,984 + +1.3 878,985 - -2.0 878,985 - +1.6 878,985 - +1.2 878,985 - -0.1 878,987 + -1.8 878,987 + +0.3 878,987 + -1.6 878,988 - +0.7 879,008 + -1.6 879,009 - -1.8 879,022 + +0.4 879,022 + -1.7 879,022 + -1.4 879,023 - -1.9 879,054 + +0.6 879,055 - +1.1 879,072 - +0.2 879,131 + +0.9 879,165 + -0.3 879,166 - -1.1 879,166 - +1.0 879,168 + +1.6 879,168 + -0.7 879,168 + +0.0 879,168 + +1.4 879,169 - -0.8 879,314 + +0.3 879,315 - +1.1 879,319 + +0.2 879,319 + -0.4 879,329 - +0.1 879,394 - +0.0 879,438 + -1.2 879,438 + +0.3 879,438 + -0.1 879,439 - +0.6 879,448 + +0.6 879,448 + -0.1 879,448 + +0.7 879,449 - -0.4 879,449 - -0.3 879,551 - Sama_0715 0.22 +0.6 879,567 + Sama_0715 0.25 +1.0 879,567 + Sama_0715 0.25 +0.6 879,568 - Sama_0715 0.25 -0.3 879,635 + Sama_0715 0.39 +0.7 879,635 + Sama_0715 0.39 +0.8 879,635 + Sama_0715 0.39 -2.5 879,635 + Sama_0715 0.39 +0.9 879,635 + Sama_0715 0.39 +1.6 879,635 + Sama_0715 0.39 -0.5 879,635 + Sama_0715 0.39 -0.5 879,635 + Sama_0715 0.39 +0.4 879,635 + Sama_0715 0.39 -0.3 879,635 + Sama_0715 0.39 -1.4 879,635 + Sama_0715 0.39 -0.3 879,635 + Sama_0715 0.39 -1.5 879,636 - Sama_0715 0.40 +2.3 879,636 - Sama_0715 0.40 -0.7 879,636 - Sama_0715 0.40 -1.4 879,636 - Sama_0715 0.40 +1.1 879,636 - Sama_0715 0.40 +0.6 879,636 - Sama_0715 0.40 +0.2 879,636 - Sama_0715 0.40 +0.9 879,675 + Sama_0715 0.48 -0.7 879,675 + Sama_0715 0.48 +1.2 879,676 - Sama_0715 0.48 -0.1 879,683 + Sama_0715 0.50 +0.3 879,683 + Sama_0715 0.50 -0.1 879,684 - Sama_0715 0.50 +0.5 879,759 + Sama_0715 0.66 -0.1 879,759 + Sama_0715 0.66 -0.4 879,760 - Sama_0715 0.66 -1.9 879,760 - Sama_0715 0.66 +0.0 879,809 + Sama_0715 0.76 +1.4 879,809 + Sama_0715 0.76 -2.0 879,810 - Sama_0715 0.77 -1.6 879,810 - Sama_0715 0.77 -0.9 879,847 + Sama_0715 0.85 +0.4 879,896 + -1.3 879,896 + +2.0 879,896 + -1.5 879,897 - +1.3 879,897 - -0.3 879,897 - -1.0 879,902 + -0.2 879,902 + +0.3 879,903 - -0.7 879,903 - -1.6 879,903 - +0.7 879,918 - -0.4 879,931 + -1.6 879,932 - +0.8 879,932 - -0.2 879,933 + -1.1 879,947 + +0.2 879,950 + -0.1 880,007 + +1.4 880,007 + +0.4 880,007 + -1.5 880,007 + +0.0 880,008 - -1.9 880,202 + Sama_0716 0.51 +0.0 880,203 - Sama_0716 0.51 -0.2 880,203 - Sama_0716 0.51 -0.4 880,232 + Sama_0716 0.59 +1.2 880,232 + Sama_0716 0.59 +1.2 880,232 + Sama_0716 0.59 +0.1 880,232 + Sama_0716 0.59 -0.1 880,233 - Sama_0716 0.59 -0.6 880,262 + Sama_0716 0.66 -0.4 880,263 - Sama_0716 0.66 +0.7 880,275 + Sama_0716 0.69 -1.4 880,275 + Sama_0716 0.69 +1.3 880,275 + Sama_0716 0.69 +0.1 880,275 + Sama_0716 0.69 +0.4 880,276 - Sama_0716 0.69 +0.6 880,318 + Sama_0716 0.80 -1.4 880,319 - Sama_0716 0.80 -1.4 880,380 + -1.0 880,381 - +0.0 880,391 + +1.1 880,391 + -0.2 880,391 + +0.9 880,391 + -0.1 880,392 - +1.0 880,392 - +0.0 880,422 - -1.1 880,422 - +0.3 880,422 - -0.2 880,440 - +0.3 880,445 + +0.6 880,445 + -1.7 880,446 - -0.1 880,446 - +0.6 880,471 + -0.4 880,472 - +0.2 880,472 - -0.5 880,500 + +0.0 880,528 + +0.6 880,528 + -2.0 880,529 - +0.5 880,571 + +0.1 880,572 - -1.2 880,667 - Sama_0717 0.10 +0.2 880,667 - Sama_0717 0.10 +0.5 880,768 - Sama_0717 0.16 +1.2 880,768 - Sama_0717 0.16 -1.5
Or see this region's nucleotide sequence