Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0643 and Sama_0644 are separated by 83 nucleotides Sama_0644 and Sama_0645 are separated by 150 nucleotides Sama_0645 and Sama_0646 are separated by 44 nucleotides
Sama_0643: Sama_0643 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 798,239 to 799,675
_0643
Sama_0644: Sama_0644 - magnesium transporter, putative (RefSeq), at 799,759 to 800,724
_0644
Sama_0645: Sama_0645 - hypothetical protein (RefSeq), at 800,875 to 801,249
_0645
Sama_0646: Sama_0646 - response regulator receiver protein (RefSeq), at 801,294 to 801,923
_0646
Position (kb) 799
800
801 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 798.835 kb on + strand, within Sama_0643 at 798.871 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.919 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.929 kb on + strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.930 kb on - strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.997 kb on + strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 798.998 kb on - strand, within Sama_0643 at 799.143 kb on + strand, within Sama_0643 at 799.144 kb on - strand, within Sama_0643 at 799.144 kb on - strand, within Sama_0643 at 799.181 kb on - strand, within Sama_0643 at 799.181 kb on - strand, within Sama_0643 at 799.181 kb on - strand, within Sama_0643 at 799.363 kb on + strand, within Sama_0643 at 799.375 kb on + strand, within Sama_0643 at 799.375 kb on + strand, within Sama_0643 at 799.375 kb on + strand, within Sama_0643 at 799.376 kb on - strand, within Sama_0643 at 799.376 kb on - strand, within Sama_0643 at 799.376 kb on - strand, within Sama_0643 at 799.379 kb on - strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.431 kb on + strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.432 kb on - strand, within Sama_0643 at 799.495 kb on - strand, within Sama_0643 at 799.495 kb on - strand, within Sama_0643 at 799.495 kb on - strand, within Sama_0643 at 799.534 kb on + strand at 799.534 kb on + strand at 799.534 kb on + strand at 799.534 kb on + strand at 799.534 kb on + strand at 799.535 kb on - strand at 799.561 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.578 kb on + strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.579 kb on - strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.582 kb on + strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.583 kb on - strand at 799.645 kb on + strand at 799.645 kb on + strand at 799.646 kb on - strand at 799.646 kb on - strand at 799.650 kb on + strand at 799.650 kb on + strand at 799.650 kb on + strand at 799.651 kb on - strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.705 kb on + strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.706 kb on - strand at 799.799 kb on - strand at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.916 kb on - strand, within Sama_0644 at 799.940 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 799.953 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.085 kb on + strand, within Sama_0644 at 800.086 kb on - strand, within Sama_0644 at 800.118 kb on + strand, within Sama_0644 at 800.119 kb on - strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.144 kb on + strand, within Sama_0644 at 800.262 kb on + strand, within Sama_0644 at 800.263 kb on - strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.284 kb on + strand, within Sama_0644 at 800.285 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.308 kb on - strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.344 kb on + strand, within Sama_0644 at 800.345 kb on - strand, within Sama_0644 at 800.357 kb on - strand, within Sama_0644 at 800.410 kb on - strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.424 kb on + strand, within Sama_0644 at 800.467 kb on + strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.468 kb on - strand, within Sama_0644 at 800.603 kb on + strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.604 kb on - strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.622 kb on + strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.623 kb on - strand, within Sama_0644 at 800.699 kb on + strand at 800.699 kb on + strand at 800.699 kb on + strand at 800.699 kb on + strand at 800.700 kb on - strand at 800.700 kb on - strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.705 kb on + strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.706 kb on - strand at 800.757 kb on + strand at 800.757 kb on + strand at 800.757 kb on + strand at 800.758 kb on - strand at 800.785 kb on - strand at 800.785 kb on - strand at 800.821 kb on + strand at 800.821 kb on + strand at 800.822 kb on - strand at 800.822 kb on - strand at 800.822 kb on - strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.823 kb on + strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.824 kb on - strand at 800.869 kb on + strand at 800.869 kb on + strand at 800.869 kb on + strand at 800.874 kb on + strand at 800.874 kb on + strand at 800.875 kb on - strand at 800.881 kb on + strand at 800.882 kb on - strand at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.002 kb on + strand, within Sama_0645 at 801.003 kb on - strand, within Sama_0645 at 801.003 kb on - strand, within Sama_0645 at 801.005 kb on + strand, within Sama_0645 at 801.012 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.103 kb on + strand, within Sama_0645 at 801.104 kb on - strand, within Sama_0645 at 801.104 kb on - strand, within Sama_0645 at 801.121 kb on + strand, within Sama_0645 at 801.161 kb on - strand, within Sama_0645 at 801.200 kb on + strand, within Sama_0645 at 801.201 kb on - strand, within Sama_0645 at 801.233 kb on + strand at 801.295 kb on + strand at 801.295 kb on + strand at 801.307 kb on + strand at 801.308 kb on - strand at 801.369 kb on + strand, within Sama_0646 at 801.369 kb on + strand, within Sama_0646 at 801.477 kb on + strand, within Sama_0646 at 801.477 kb on + strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.478 kb on - strand, within Sama_0646 at 801.520 kb on + strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.521 kb on - strand, within Sama_0646 at 801.614 kb on - strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.645 kb on + strand, within Sama_0646 at 801.646 kb on - strand, within Sama_0646 at 801.646 kb on - strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.656 kb on + strand, within Sama_0646 at 801.657 kb on - strand, within Sama_0646
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 798,835 + Sama_0643 0.41 +1.0 798,871 + Sama_0643 0.44 -0.0 798,919 + Sama_0643 0.47 +0.8 798,919 + Sama_0643 0.47 -0.3 798,919 + Sama_0643 0.47 -0.3 798,919 + Sama_0643 0.47 -0.3 798,929 + Sama_0643 0.48 +1.9 798,929 + Sama_0643 0.48 -0.4 798,929 + Sama_0643 0.48 +0.6 798,929 + Sama_0643 0.48 +0.3 798,929 + Sama_0643 0.48 +0.7 798,929 + Sama_0643 0.48 +1.1 798,929 + Sama_0643 0.48 -1.2 798,929 + Sama_0643 0.48 +0.3 798,930 - Sama_0643 0.48 +0.5 798,930 - Sama_0643 0.48 +0.6 798,930 - Sama_0643 0.48 +1.3 798,930 - Sama_0643 0.48 +2.4 798,930 - Sama_0643 0.48 +0.1 798,997 + Sama_0643 0.53 -1.3 798,997 + Sama_0643 0.53 -1.1 798,998 - Sama_0643 0.53 -0.6 798,998 - Sama_0643 0.53 -0.0 798,998 - Sama_0643 0.53 +0.4 799,143 + Sama_0643 0.63 -0.7 799,144 - Sama_0643 0.63 -0.9 799,144 - Sama_0643 0.63 -0.4 799,181 - Sama_0643 0.66 -0.5 799,181 - Sama_0643 0.66 +1.0 799,181 - Sama_0643 0.66 +0.6 799,363 + Sama_0643 0.78 +0.0 799,375 + Sama_0643 0.79 +0.0 799,375 + Sama_0643 0.79 +0.7 799,375 + Sama_0643 0.79 +1.6 799,376 - Sama_0643 0.79 -1.7 799,376 - Sama_0643 0.79 +0.3 799,376 - Sama_0643 0.79 +0.0 799,379 - Sama_0643 0.79 -1.2 799,431 + Sama_0643 0.83 +0.9 799,431 + Sama_0643 0.83 +0.6 799,431 + Sama_0643 0.83 -0.6 799,431 + Sama_0643 0.83 -1.2 799,431 + Sama_0643 0.83 +0.8 799,432 - Sama_0643 0.83 -2.6 799,432 - Sama_0643 0.83 -0.7 799,432 - Sama_0643 0.83 +0.8 799,432 - Sama_0643 0.83 -0.7 799,432 - Sama_0643 0.83 -0.5 799,495 - Sama_0643 0.87 -0.0 799,495 - Sama_0643 0.87 +0.1 799,495 - Sama_0643 0.87 +1.9 799,534 + +0.4 799,534 + +0.9 799,534 + +0.3 799,534 + -0.6 799,534 + +0.9 799,535 - -1.9 799,561 + +0.2 799,578 + +0.4 799,578 + +0.8 799,578 + -1.2 799,578 + -0.1 799,578 + +1.8 799,578 + +0.5 799,579 - +0.5 799,579 - +0.0 799,579 - +0.3 799,579 - +3.0 799,579 - -0.5 799,579 - -1.3 799,579 - -0.7 799,579 - -1.0 799,582 + -2.4 799,582 + -1.3 799,582 + +0.5 799,582 + -1.2 799,582 + +0.1 799,582 + +0.0 799,582 + +0.6 799,582 + +0.8 799,582 + -1.1 799,582 + +1.6 799,582 + -0.1 799,582 + -1.2 799,582 + -0.6 799,582 + -1.7 799,583 - +0.7 799,583 - -0.3 799,583 - +1.1 799,583 - -2.0 799,583 - -1.5 799,583 - -0.7 799,583 - +0.4 799,583 - +0.5 799,583 - +0.3 799,645 + +0.8 799,645 + +0.7 799,646 - +0.2 799,646 - +0.8 799,650 + +0.6 799,650 + +0.0 799,650 + -1.0 799,651 - +1.0 799,705 + +1.3 799,705 + -0.1 799,705 + +0.4 799,705 + +0.4 799,705 + +0.2 799,706 - +0.0 799,706 - -0.1 799,706 - -1.6 799,706 - -0.9 799,706 - -1.4 799,706 - -0.3 799,706 - -1.3 799,799 - -0.6 799,916 - Sama_0644 0.16 +0.6 799,916 - Sama_0644 0.16 -0.4 799,916 - Sama_0644 0.16 -0.7 799,940 + Sama_0644 0.19 +1.6 799,953 + Sama_0644 0.20 -1.1 799,953 + Sama_0644 0.20 -1.0 800,085 + Sama_0644 0.34 +0.1 800,085 + Sama_0644 0.34 -0.7 800,086 - Sama_0644 0.34 -0.5 800,118 + Sama_0644 0.37 -0.5 800,119 - Sama_0644 0.37 +1.6 800,144 + Sama_0644 0.40 +0.9 800,144 + Sama_0644 0.40 -0.1 800,262 + Sama_0644 0.52 +0.2 800,263 - Sama_0644 0.52 -0.7 800,284 + Sama_0644 0.54 -0.2 800,284 + Sama_0644 0.54 +0.4 800,284 + Sama_0644 0.54 -0.7 800,285 - Sama_0644 0.54 +0.3 800,308 - Sama_0644 0.57 -0.1 800,308 - Sama_0644 0.57 -2.0 800,308 - Sama_0644 0.57 -0.9 800,308 - Sama_0644 0.57 +0.3 800,344 + Sama_0644 0.61 +0.8 800,344 + Sama_0644 0.61 +1.0 800,344 + Sama_0644 0.61 -0.4 800,344 + Sama_0644 0.61 -1.0 800,344 + Sama_0644 0.61 +0.7 800,345 - Sama_0644 0.61 -0.2 800,357 - Sama_0644 0.62 -0.6 800,410 - Sama_0644 0.67 -0.9 800,424 + Sama_0644 0.69 -0.0 800,424 + Sama_0644 0.69 +1.6 800,424 + Sama_0644 0.69 -1.2 800,467 + Sama_0644 0.73 -0.5 800,468 - Sama_0644 0.73 -0.2 800,468 - Sama_0644 0.73 -0.5 800,468 - Sama_0644 0.73 +0.8 800,603 + Sama_0644 0.87 -0.9 800,604 - Sama_0644 0.87 +0.4 800,604 - Sama_0644 0.87 +0.2 800,604 - Sama_0644 0.87 +0.7 800,604 - Sama_0644 0.87 -0.1 800,604 - Sama_0644 0.87 -0.2 800,604 - Sama_0644 0.87 -0.1 800,604 - Sama_0644 0.87 -0.0 800,622 + Sama_0644 0.89 -0.7 800,622 + Sama_0644 0.89 -1.2 800,623 - Sama_0644 0.89 +0.2 800,623 - Sama_0644 0.89 -1.7 800,699 + -0.4 800,699 + +0.2 800,699 + -1.0 800,699 + -0.6 800,700 - +0.6 800,700 - -0.1 800,705 + -0.5 800,705 + +1.3 800,705 + -1.1 800,705 + +0.1 800,705 + +0.1 800,705 + +0.8 800,705 + +0.1 800,705 + -0.8 800,705 + -0.9 800,705 + +0.5 800,705 + +0.2 800,705 + -1.4 800,705 + +0.4 800,706 - +0.1 800,706 - -0.4 800,706 - -0.2 800,706 - -0.2 800,706 - +0.1 800,706 - -0.5 800,706 - -0.7 800,757 + +0.1 800,757 + +0.1 800,757 + +0.7 800,758 - -2.2 800,785 - -0.7 800,785 - -2.6 800,821 + +0.6 800,821 + -0.1 800,822 - +2.0 800,822 - -1.1 800,822 - +0.9 800,823 + +0.8 800,823 + -0.7 800,823 + +0.8 800,823 + +0.7 800,823 + -0.7 800,823 + -0.1 800,823 + -1.6 800,823 + -1.1 800,824 - -1.2 800,824 - +0.0 800,824 - -1.3 800,824 - -0.9 800,824 - -0.6 800,824 - +2.0 800,824 - +1.2 800,869 + -1.3 800,869 + +0.3 800,869 + +1.4 800,874 + +0.7 800,874 + -1.0 800,875 - +0.4 800,881 + -2.1 800,882 - +0.5 801,002 + Sama_0645 0.34 -2.9 801,002 + Sama_0645 0.34 -0.3 801,002 + Sama_0645 0.34 +0.8 801,002 + Sama_0645 0.34 -1.7 801,002 + Sama_0645 0.34 +0.1 801,002 + Sama_0645 0.34 -0.8 801,003 - Sama_0645 0.34 +1.6 801,003 - Sama_0645 0.34 +0.3 801,005 + Sama_0645 0.35 +0.6 801,012 + Sama_0645 0.37 +1.6 801,103 + Sama_0645 0.61 +1.4 801,103 + Sama_0645 0.61 +0.5 801,103 + Sama_0645 0.61 +0.8 801,103 + Sama_0645 0.61 -3.0 801,104 - Sama_0645 0.61 +0.8 801,104 - Sama_0645 0.61 -0.1 801,121 + Sama_0645 0.66 -1.7 801,161 - Sama_0645 0.76 +3.6 801,200 + Sama_0645 0.87 -0.2 801,201 - Sama_0645 0.87 -0.1 801,233 + -1.4 801,295 + +0.4 801,295 + +1.6 801,307 + -1.7 801,308 - -0.7 801,369 + Sama_0646 0.12 +0.0 801,369 + Sama_0646 0.12 +0.2 801,477 + Sama_0646 0.29 -0.7 801,477 + Sama_0646 0.29 -1.0 801,478 - Sama_0646 0.29 -0.7 801,478 - Sama_0646 0.29 +0.1 801,478 - Sama_0646 0.29 -0.5 801,478 - Sama_0646 0.29 +2.3 801,520 + Sama_0646 0.36 -0.2 801,521 - Sama_0646 0.36 +0.1 801,521 - Sama_0646 0.36 +0.7 801,521 - Sama_0646 0.36 +1.0 801,614 - Sama_0646 0.51 -0.0 801,645 + Sama_0646 0.56 -0.7 801,645 + Sama_0646 0.56 -2.9 801,645 + Sama_0646 0.56 +0.2 801,645 + Sama_0646 0.56 -0.6 801,646 - Sama_0646 0.56 +0.2 801,646 - Sama_0646 0.56 +0.1 801,656 + Sama_0646 0.57 +0.0 801,656 + Sama_0646 0.57 -0.1 801,656 + Sama_0646 0.57 +0.8 801,657 - Sama_0646 0.58 +0.3
Or see this region's nucleotide sequence