Strain Fitness in Shewanella amazonensis SB2B around Sama_0589

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0587 and Sama_0588 are separated by 3 nucleotidesSama_0588 and Sama_0589 are separated by 54 nucleotidesSama_0589 and Sama_0590 are separated by 255 nucleotides Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306 _0587 Sama_0588: Sama_0588 - FMN-binding (RefSeq), at 734,310 to 734,819 _0588 Sama_0589: Sama_0589 - phosphate-selective porin O and P (RefSeq), at 734,874 to 736,049 _0589 Sama_0590: Sama_0590 - putative TonB-dependent receptor protein (RefSeq), at 736,305 to 738,518 _0590 Position (kb) 734 735 736 737Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 733.914 kb on + strand, within Sama_0587at 733.915 kb on - strand, within Sama_0587at 733.942 kb on + strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.025 kb on - strand, within Sama_0587at 734.062 kb on + strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.116 kb on - strand, within Sama_0587at 734.170 kb on - strand, within Sama_0587at 734.176 kb on - strand, within Sama_0587at 734.217 kb on - strand, within Sama_0587at 734.276 kb on + strandat 734.277 kb on - strandat 734.286 kb on - strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.342 kb on - strandat 734.342 kb on - strandat 734.376 kb on + strand, within Sama_0588at 734.409 kb on - strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.504 kb on - strand, within Sama_0588at 734.505 kb on + strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.511 kb on + strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.526 kb on + strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.561 kb on + strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.620 kb on + strand, within Sama_0588at 734.626 kb on - strand, within Sama_0588at 734.641 kb on + strand, within Sama_0588at 734.642 kb on - strand, within Sama_0588at 734.682 kb on - strand, within Sama_0588at 734.748 kb on - strand, within Sama_0588at 734.809 kb on + strandat 734.809 kb on + strandat 734.810 kb on - strandat 734.810 kb on - strandat 734.839 kb on + strandat 734.839 kb on + strandat 734.840 kb on - strandat 734.851 kb on + strandat 734.851 kb on + strandat 734.862 kb on + strandat 734.863 kb on - strandat 734.863 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.885 kb on - strandat 734.953 kb on - strandat 734.953 kb on - strandat 734.974 kb on + strandat 734.975 kb on - strandat 734.981 kb on + strandat 734.981 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 735.098 kb on - strand, within Sama_0589at 735.098 kb on - strand, within Sama_0589at 735.163 kb on + strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.197 kb on - strand, within Sama_0589at 735.201 kb on - strand, within Sama_0589at 735.237 kb on + strand, within Sama_0589at 735.238 kb on - strand, within Sama_0589at 735.248 kb on + strand, within Sama_0589at 735.331 kb on + strand, within Sama_0589at 735.331 kb on + strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.382 kb on - strand, within Sama_0589at 735.382 kb on - strand, within Sama_0589at 735.388 kb on + strand, within Sama_0589at 735.388 kb on + strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.492 kb on + strand, within Sama_0589at 735.493 kb on - strand, within Sama_0589at 735.493 kb on - strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.515 kb on + strand, within Sama_0589at 735.515 kb on + strand, within Sama_0589at 735.516 kb on - strand, within Sama_0589at 735.516 kb on - strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.593 kb on + strand, within Sama_0589at 735.593 kb on + strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.603 kb on - strand, within Sama_0589at 735.603 kb on - strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.742 kb on - strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.809 kb on - strand, within Sama_0589at 735.809 kb on - strand, within Sama_0589at 736.065 kb on + strandat 736.066 kb on - strandat 736.068 kb on + strandat 736.069 kb on - strandat 736.189 kb on - strandat 736.274 kb on + strandat 736.275 kb on - strandat 736.331 kb on + strandat 736.332 kb on - strandat 736.383 kb on - strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.384 kb on + strandat 736.385 kb on - strandat 736.385 kb on - strandat 736.417 kb on + strandat 736.418 kb on - strandat 736.418 kb on - strandat 736.433 kb on + strandat 736.433 kb on + strandat 736.439 kb on + strandat 736.445 kb on - strandat 736.445 kb on - strandat 736.455 kb on + strandat 736.537 kb on + strand, within Sama_0590at 736.537 kb on + strand, within Sama_0590at 736.538 kb on - strand, within Sama_0590at 736.538 kb on - strand, within Sama_0590at 736.591 kb on + strand, within Sama_0590at 736.592 kb on - strand, within Sama_0590at 736.592 kb on - strand, within Sama_0590at 736.592 kb on - strand, within Sama_0590at 736.592 kb on - strand, within Sama_0590at 736.612 kb on + strand, within Sama_0590at 736.612 kb on + strand, within Sama_0590at 736.612 kb on + strand, within Sama_0590at 736.613 kb on - strand, within Sama_0590at 736.613 kb on - strand, within Sama_0590at 736.613 kb on - strand, within Sama_0590at 736.693 kb on + strand, within Sama_0590at 736.693 kb on + strand, within Sama_0590at 736.693 kb on + strand, within Sama_0590at 736.694 kb on - strand, within Sama_0590at 736.694 kb on - strand, within Sama_0590at 736.694 kb on - strand, within Sama_0590at 736.694 kb on - strand, within Sama_0590at 736.694 kb on - strand, within Sama_0590at 736.697 kb on + strand, within Sama_0590at 736.697 kb on + strand, within Sama_0590at 736.698 kb on - strand, within Sama_0590at 736.698 kb on - strand, within Sama_0590at 736.698 kb on - strand, within Sama_0590at 736.699 kb on + strand, within Sama_0590at 736.699 kb on + strand, within Sama_0590at 736.700 kb on - strand, within Sama_0590at 736.700 kb on - strand, within Sama_0590at 736.700 kb on - strand, within Sama_0590at 736.748 kb on - strand, within Sama_0590at 736.795 kb on + strand, within Sama_0590at 736.795 kb on + strand, within Sama_0590at 736.795 kb on + strand, within Sama_0590at 736.795 kb on + strand, within Sama_0590at 736.796 kb on - strand, within Sama_0590at 736.796 kb on - strand, within Sama_0590at 736.796 kb on - strand, within Sama_0590at 736.861 kb on + strand, within Sama_0590at 736.861 kb on + strand, within Sama_0590at 736.861 kb on + strand, within Sama_0590at 736.862 kb on - strand, within Sama_0590at 736.862 kb on - strand, within Sama_0590at 736.870 kb on + strand, within Sama_0590

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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733,914 + Sama_0587 0.48 -0.4
733,915 - Sama_0587 0.48 -2.9
733,942 + Sama_0587 0.52 -1.2
733,943 - Sama_0587 0.52 -2.7
733,943 - Sama_0587 0.52 -1.4
733,943 - Sama_0587 0.52 -2.0
733,943 - Sama_0587 0.52 -0.7
734,024 + Sama_0587 0.63 -1.0
734,024 + Sama_0587 0.63 -1.8
734,024 + Sama_0587 0.63 -2.1
734,025 - Sama_0587 0.63 -0.7
734,062 + Sama_0587 0.68 -0.4
734,063 - Sama_0587 0.68 -1.5
734,063 - Sama_0587 0.68 -1.2
734,063 - Sama_0587 0.68 -2.2
734,104 + Sama_0587 0.73 -3.0
734,104 + Sama_0587 0.73 +0.6
734,105 - Sama_0587 0.73 -1.7
734,105 - Sama_0587 0.73 -1.4
734,107 + Sama_0587 0.74 -2.1
734,107 + Sama_0587 0.74 -2.6
734,116 - Sama_0587 0.75 -1.0
734,170 - Sama_0587 0.82 -1.0
734,176 - Sama_0587 0.83 -1.2
734,217 - Sama_0587 0.88 -0.4
734,276 + -1.0
734,277 - -1.2
734,286 - -1.7
734,341 + -2.1
734,341 + -2.4
734,341 + -1.7
734,341 + -1.4
734,342 - -1.5
734,342 - -0.7
734,376 + Sama_0588 0.13 -1.0
734,409 - Sama_0588 0.19 -1.0
734,503 + Sama_0588 0.38 -1.6
734,503 + Sama_0588 0.38 -1.4
734,504 - Sama_0588 0.38 +0.0
734,505 + Sama_0588 0.38 -1.4
734,506 - Sama_0588 0.38 -1.2
734,506 - Sama_0588 0.38 -1.5
734,511 + Sama_0588 0.39 -2.8
734,512 - Sama_0588 0.40 +0.1
734,512 - Sama_0588 0.40 -2.5
734,526 + Sama_0588 0.42 -1.4
734,527 - Sama_0588 0.43 -3.0
734,527 - Sama_0588 0.43 -1.2
734,561 + Sama_0588 0.49 -1.8
734,562 - Sama_0588 0.49 -2.8
734,562 - Sama_0588 0.49 -1.3
734,620 + Sama_0588 0.61 -1.0
734,626 - Sama_0588 0.62 -2.2
734,641 + Sama_0588 0.65 -1.5
734,642 - Sama_0588 0.65 -2.4
734,682 - Sama_0588 0.73 -2.8
734,748 - Sama_0588 0.86 -1.5
734,809 + -1.7
734,809 + +0.9
734,810 - -3.0
734,810 - -1.7
734,839 + -1.0
734,839 + -1.2
734,840 - +1.3
734,851 + -2.7
734,851 + -0.8
734,862 + -1.0
734,863 - -1.7
734,863 - -2.5
734,867 - -3.4
734,867 - -2.8
734,867 - +0.6
734,885 - -2.7
734,953 - -0.2
734,953 - -1.4
734,974 + +0.0
734,975 - -1.5
734,981 + -3.8
734,981 - +0.0
734,982 - -1.2
734,982 - -2.1
734,982 - -1.5
734,982 - -1.8
734,985 + -2.0
734,985 + -3.0
734,985 + +0.0
734,985 + +0.0
734,985 + -0.4
734,986 - -1.0
734,986 - -3.0
734,986 - -3.0
734,986 - -2.5
734,986 - -0.7
735,098 - Sama_0589 0.19 -1.4
735,098 - Sama_0589 0.19 -0.4
735,163 + Sama_0589 0.25 -1.2
735,164 - Sama_0589 0.25 -2.6
735,164 - Sama_0589 0.25 -1.8
735,180 - Sama_0589 0.26 -2.0
735,180 - Sama_0589 0.26 -2.2
735,180 - Sama_0589 0.26 +0.0
735,180 - Sama_0589 0.26 -3.4
735,197 - Sama_0589 0.27 -2.1
735,201 - Sama_0589 0.28 -4.0
735,237 + Sama_0589 0.31 -0.5
735,238 - Sama_0589 0.31 -2.3
735,248 + Sama_0589 0.32 -1.5
735,331 + Sama_0589 0.39 -1.5
735,331 + Sama_0589 0.39 -1.7
735,332 - Sama_0589 0.39 -1.2
735,332 - Sama_0589 0.39 -3.1
735,332 - Sama_0589 0.39 -2.5
735,382 - Sama_0589 0.43 -0.7
735,382 - Sama_0589 0.43 -0.7
735,388 + Sama_0589 0.44 -1.2
735,388 + Sama_0589 0.44 -0.4
735,389 - Sama_0589 0.44 -1.5
735,389 - Sama_0589 0.44 -2.7
735,389 - Sama_0589 0.44 -3.5
735,492 + Sama_0589 0.53 +0.0
735,493 - Sama_0589 0.53 -1.5
735,493 - Sama_0589 0.53 -1.8
735,495 + Sama_0589 0.53 -0.2
735,495 + Sama_0589 0.53 -2.0
735,495 + Sama_0589 0.53 -1.0
735,495 + Sama_0589 0.53 -2.9
735,495 + Sama_0589 0.53 -2.1
735,495 + Sama_0589 0.53 -0.4
735,496 - Sama_0589 0.53 -1.2
735,496 - Sama_0589 0.53 -0.7
735,496 - Sama_0589 0.53 -2.0
735,496 - Sama_0589 0.53 -1.4
735,496 - Sama_0589 0.53 -2.0
735,496 - Sama_0589 0.53 -3.4
735,496 - Sama_0589 0.53 -1.0
735,496 - Sama_0589 0.53 -2.0
735,515 + Sama_0589 0.55 -0.4
735,515 + Sama_0589 0.55 -2.5
735,516 - Sama_0589 0.55 -0.1
735,516 - Sama_0589 0.55 -3.3
735,529 + Sama_0589 0.56 -1.8
735,529 + Sama_0589 0.56 -1.7
735,529 + Sama_0589 0.56 -1.2
735,529 + Sama_0589 0.56 -1.2
735,593 + Sama_0589 0.61 -1.5
735,593 + Sama_0589 0.61 -1.2
735,594 - Sama_0589 0.61 +0.9
735,594 - Sama_0589 0.61 -0.5
735,594 - Sama_0589 0.61 -1.2
735,594 - Sama_0589 0.61 -2.2
735,603 - Sama_0589 0.62 -1.8
735,603 - Sama_0589 0.62 -2.9
735,628 + Sama_0589 0.64 -2.8
735,628 + Sama_0589 0.64 -1.4
735,628 + Sama_0589 0.64 -3.0
735,628 + Sama_0589 0.64 -2.9
735,629 - Sama_0589 0.64 -0.7
735,629 - Sama_0589 0.64 -1.7
735,629 - Sama_0589 0.64 +0.6
735,714 - Sama_0589 0.71 -1.5
735,714 - Sama_0589 0.71 -1.5
735,714 - Sama_0589 0.71 -1.1
735,742 - Sama_0589 0.74 -2.8
735,808 + Sama_0589 0.79 -0.2
735,808 + Sama_0589 0.79 -2.6
735,808 + Sama_0589 0.79 -1.8
735,808 + Sama_0589 0.79 -0.2
735,808 + Sama_0589 0.79 -0.5
735,808 + Sama_0589 0.79 -2.1
735,809 - Sama_0589 0.80 -1.0
735,809 - Sama_0589 0.80 -1.0
736,065 + -2.1
736,066 - -2.1
736,068 + -0.4
736,069 - -3.5
736,189 - +0.5
736,274 + -1.5
736,275 - +0.0
736,331 + +0.3
736,332 - -0.1
736,383 - -1.3
736,384 + +0.5
736,384 + -0.8
736,384 + -0.2
736,384 + +0.4
736,384 + +1.5
736,384 + +1.5
736,384 + +0.2
736,384 + +0.6
736,385 - +0.8
736,385 - -2.1
736,417 + +0.4
736,418 - -2.1
736,418 - -0.4
736,433 + -0.2
736,433 + +1.0
736,439 + -1.5
736,445 - -2.2
736,445 - -1.2
736,455 + +1.2
736,537 + Sama_0590 0.10 +0.3
736,537 + Sama_0590 0.10 +0.8
736,538 - Sama_0590 0.11 -0.6
736,538 - Sama_0590 0.11 -0.2
736,591 + Sama_0590 0.13 +1.2
736,592 - Sama_0590 0.13 -0.7
736,592 - Sama_0590 0.13 -2.5
736,592 - Sama_0590 0.13 -1.0
736,592 - Sama_0590 0.13 -0.7
736,612 + Sama_0590 0.14 +0.0
736,612 + Sama_0590 0.14 -0.2
736,612 + Sama_0590 0.14 -0.2
736,613 - Sama_0590 0.14 -2.2
736,613 - Sama_0590 0.14 -0.5
736,613 - Sama_0590 0.14 -0.6
736,693 + Sama_0590 0.18 -1.1
736,693 + Sama_0590 0.18 -0.5
736,693 + Sama_0590 0.18 -1.2
736,694 - Sama_0590 0.18 -2.2
736,694 - Sama_0590 0.18 -0.3
736,694 - Sama_0590 0.18 -1.4
736,694 - Sama_0590 0.18 -0.5
736,694 - Sama_0590 0.18 +0.3
736,697 + Sama_0590 0.18 +0.0
736,697 + Sama_0590 0.18 -0.7
736,698 - Sama_0590 0.18 -0.2
736,698 - Sama_0590 0.18 -1.4
736,698 - Sama_0590 0.18 -0.2
736,699 + Sama_0590 0.18 -1.3
736,699 + Sama_0590 0.18 -1.8
736,700 - Sama_0590 0.18 +0.4
736,700 - Sama_0590 0.18 -0.8
736,700 - Sama_0590 0.18 +0.1
736,748 - Sama_0590 0.20 -1.4
736,795 + Sama_0590 0.22 +1.4
736,795 + Sama_0590 0.22 +0.4
736,795 + Sama_0590 0.22 +0.3
736,795 + Sama_0590 0.22 +1.3
736,796 - Sama_0590 0.22 -1.7
736,796 - Sama_0590 0.22 -1.0
736,796 - Sama_0590 0.22 -1.5
736,861 + Sama_0590 0.25 +0.5
736,861 + Sama_0590 0.25 +1.8
736,861 + Sama_0590 0.25 +0.9
736,862 - Sama_0590 0.25 -0.2
736,862 - Sama_0590 0.25 -0.9
736,870 + Sama_0590 0.26 -0.5

Or see this region's nucleotide sequence