Strain Fitness in Shewanella amazonensis SB2B around Sama_0586

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0584 and Sama_0585 are separated by 133 nucleotidesSama_0585 and Sama_0586 overlap by 47 nucleotidesSama_0586 and Sama_0587 are separated by 324 nucleotides Sama_0584: Sama_0584 - elongation factor G (RefSeq), at 729,256 to 731,346 _0584 Sama_0585: Sama_0585 - hypothetical protein (RefSeq), at 731,480 to 732,361 _0585 Sama_0586: Sama_0586 - LysR family transcriptional regulator (RefSeq), at 732,315 to 733,223 _0586 Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306 _0587 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 731.344 kb on + strandat 731.348 kb on + strandat 731.348 kb on + strandat 731.348 kb on + strandat 731.400 kb on + strandat 731.400 kb on + strandat 731.401 kb on - strandat 731.401 kb on - strandat 731.439 kb on - strandat 731.460 kb on - strandat 731.463 kb on + strandat 731.464 kb on - strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.485 kb on + strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.486 kb on - strandat 731.569 kb on + strand, within Sama_0585at 731.569 kb on + strand, within Sama_0585at 731.569 kb on + strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.570 kb on - strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.582 kb on + strand, within Sama_0585at 731.583 kb on - strand, within Sama_0585at 731.583 kb on - strand, within Sama_0585at 731.601 kb on - strand, within Sama_0585at 731.601 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.619 kb on - strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.621 kb on + strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.622 kb on - strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.623 kb on + strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.624 kb on - strand, within Sama_0585at 731.658 kb on + strand, within Sama_0585at 731.659 kb on - strand, within Sama_0585at 731.723 kb on + strand, within Sama_0585at 731.723 kb on + strand, within Sama_0585at 731.724 kb on - strand, within Sama_0585at 731.724 kb on - strand, within Sama_0585at 731.733 kb on + strand, within Sama_0585at 731.733 kb on + strand, within Sama_0585at 731.734 kb on - strand, within Sama_0585at 731.800 kb on - strand, within Sama_0585at 731.800 kb on - strand, within Sama_0585at 731.848 kb on + strand, within Sama_0585at 731.848 kb on + strand, within Sama_0585at 731.849 kb on - strand, within Sama_0585at 731.913 kb on + strand, within Sama_0585at 731.914 kb on - strand, within Sama_0585at 731.925 kb on + strand, within Sama_0585at 731.926 kb on - strand, within Sama_0585at 731.926 kb on - strand, within Sama_0585at 732.001 kb on + strand, within Sama_0585at 732.001 kb on + strand, within Sama_0585at 732.007 kb on + strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.008 kb on - strand, within Sama_0585at 732.018 kb on + strand, within Sama_0585at 732.019 kb on - strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.073 kb on + strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.074 kb on - strand, within Sama_0585at 732.091 kb on + strand, within Sama_0585at 732.189 kb on - strand, within Sama_0585at 732.207 kb on + strand, within Sama_0585at 732.218 kb on + strand, within Sama_0585at 732.218 kb on + strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.219 kb on - strand, within Sama_0585at 732.250 kb on + strand, within Sama_0585at 732.251 kb on - strand, within Sama_0585at 732.251 kb on - strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.252 kb on + strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.253 kb on - strand, within Sama_0585at 732.307 kb on + strandat 732.308 kb on - strandat 732.317 kb on - strandat 732.444 kb on + strand, within Sama_0586at 732.444 kb on + strand, within Sama_0586at 732.444 kb on + strand, within Sama_0586at 732.444 kb on + strand, within Sama_0586at 732.445 kb on - strand, within Sama_0586at 732.502 kb on - strand, within Sama_0586at 732.502 kb on - strand, within Sama_0586at 732.562 kb on + strand, within Sama_0586at 732.579 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.637 kb on + strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.638 kb on - strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.644 kb on + strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.645 kb on - strand, within Sama_0586at 732.730 kb on + strand, within Sama_0586at 732.871 kb on + strand, within Sama_0586at 732.872 kb on - strand, within Sama_0586at 732.943 kb on + strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.944 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.973 kb on - strand, within Sama_0586at 732.987 kb on + strand, within Sama_0586at 733.250 kb on + strandat 733.261 kb on + strandat 733.266 kb on - strandat 733.266 kb on - strandat 733.282 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.336 kb on - strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.351 kb on - strandat 733.493 kb on + strandat 733.507 kb on + strandat 733.516 kb on + strandat 733.516 kb on + strandat 733.549 kb on + strandat 733.550 kb on - strandat 733.573 kb on - strandat 733.583 kb on - strandat 733.583 kb on - strandat 733.605 kb on + strandat 733.606 kb on - strandat 733.725 kb on + strand, within Sama_0587at 733.726 kb on - strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.817 kb on - strand, within Sama_0587at 733.914 kb on + strand, within Sama_0587at 733.915 kb on - strand, within Sama_0587at 733.942 kb on + strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.025 kb on - strand, within Sama_0587at 734.062 kb on + strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.116 kb on - strand, within Sama_0587at 734.170 kb on - strand, within Sama_0587at 734.176 kb on - strand, within Sama_0587at 734.217 kb on - strand, within Sama_0587

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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731,344 + +1.4
731,348 + +0.7
731,348 + +1.6
731,348 + -0.7
731,400 + +0.4
731,400 + -0.0
731,401 - -1.4
731,401 - +1.0
731,439 - -1.2
731,460 - -1.2
731,463 + +0.3
731,464 - +0.8
731,485 + +0.6
731,485 + -0.2
731,485 + -1.2
731,485 + -0.8
731,486 - -0.1
731,486 - -0.3
731,486 - +0.6
731,486 - -0.7
731,569 + Sama_0585 0.10 -0.9
731,569 + Sama_0585 0.10 -0.7
731,569 + Sama_0585 0.10 +0.3
731,570 - Sama_0585 0.10 -1.4
731,570 - Sama_0585 0.10 +0.1
731,570 - Sama_0585 0.10 -1.1
731,570 - Sama_0585 0.10 -1.1
731,582 + Sama_0585 0.12 +0.4
731,582 + Sama_0585 0.12 -1.6
731,582 + Sama_0585 0.12 -0.3
731,583 - Sama_0585 0.12 +0.1
731,583 - Sama_0585 0.12 -3.0
731,601 - Sama_0585 0.14 +0.8
731,601 - Sama_0585 0.14 +0.3
731,619 - Sama_0585 0.16 -1.5
731,619 - Sama_0585 0.16 -0.7
731,619 - Sama_0585 0.16 +0.0
731,621 + Sama_0585 0.16 +0.2
731,621 + Sama_0585 0.16 -1.6
731,621 + Sama_0585 0.16 -1.8
731,621 + Sama_0585 0.16 +0.9
731,622 - Sama_0585 0.16 -1.0
731,622 - Sama_0585 0.16 -1.1
731,622 - Sama_0585 0.16 -1.2
731,622 - Sama_0585 0.16 -0.2
731,622 - Sama_0585 0.16 -0.4
731,622 - Sama_0585 0.16 +1.2
731,622 - Sama_0585 0.16 -1.1
731,622 - Sama_0585 0.16 +0.9
731,623 + Sama_0585 0.16 +0.6
731,623 + Sama_0585 0.16 +1.8
731,623 + Sama_0585 0.16 +1.6
731,623 + Sama_0585 0.16 -1.0
731,623 + Sama_0585 0.16 -0.6
731,623 + Sama_0585 0.16 -0.5
731,624 - Sama_0585 0.16 -0.7
731,624 - Sama_0585 0.16 -0.7
731,624 - Sama_0585 0.16 -0.2
731,624 - Sama_0585 0.16 -0.2
731,624 - Sama_0585 0.16 -1.0
731,624 - Sama_0585 0.16 +0.6
731,658 + Sama_0585 0.20 -1.7
731,659 - Sama_0585 0.20 -0.2
731,723 + Sama_0585 0.28 -0.6
731,723 + Sama_0585 0.28 +0.5
731,724 - Sama_0585 0.28 -0.2
731,724 - Sama_0585 0.28 +0.2
731,733 + Sama_0585 0.29 +0.6
731,733 + Sama_0585 0.29 +1.2
731,734 - Sama_0585 0.29 +0.6
731,800 - Sama_0585 0.36 +0.6
731,800 - Sama_0585 0.36 -0.3
731,848 + Sama_0585 0.42 +1.1
731,848 + Sama_0585 0.42 -0.1
731,849 - Sama_0585 0.42 +0.4
731,913 + Sama_0585 0.49 -1.0
731,914 - Sama_0585 0.49 +0.0
731,925 + Sama_0585 0.50 +0.9
731,926 - Sama_0585 0.51 +1.2
731,926 - Sama_0585 0.51 -0.0
732,001 + Sama_0585 0.59 +2.8
732,001 + Sama_0585 0.59 +0.4
732,007 + Sama_0585 0.60 -1.5
732,008 - Sama_0585 0.60 -0.4
732,008 - Sama_0585 0.60 -2.0
732,008 - Sama_0585 0.60 +0.8
732,018 + Sama_0585 0.61 +0.4
732,019 - Sama_0585 0.61 -0.7
732,073 + Sama_0585 0.67 -0.5
732,073 + Sama_0585 0.67 +0.9
732,073 + Sama_0585 0.67 -0.6
732,074 - Sama_0585 0.67 -0.7
732,074 - Sama_0585 0.67 +0.9
732,074 - Sama_0585 0.67 -0.0
732,074 - Sama_0585 0.67 -2.9
732,074 - Sama_0585 0.67 +0.9
732,074 - Sama_0585 0.67 -1.5
732,074 - Sama_0585 0.67 -2.4
732,091 + Sama_0585 0.69 +1.2
732,189 - Sama_0585 0.80 +0.5
732,207 + Sama_0585 0.82 +0.4
732,218 + Sama_0585 0.84 -0.1
732,218 + Sama_0585 0.84 +1.0
732,219 - Sama_0585 0.84 +1.2
732,219 - Sama_0585 0.84 -0.5
732,219 - Sama_0585 0.84 +0.0
732,219 - Sama_0585 0.84 -0.4
732,219 - Sama_0585 0.84 -0.9
732,219 - Sama_0585 0.84 +2.4
732,219 - Sama_0585 0.84 -1.0
732,219 - Sama_0585 0.84 -0.9
732,250 + Sama_0585 0.87 -1.0
732,251 - Sama_0585 0.87 -0.1
732,251 - Sama_0585 0.87 -0.7
732,252 + Sama_0585 0.88 +0.4
732,252 + Sama_0585 0.88 -0.5
732,252 + Sama_0585 0.88 +0.0
732,253 - Sama_0585 0.88 -0.6
732,253 - Sama_0585 0.88 +0.3
732,253 - Sama_0585 0.88 -2.1
732,253 - Sama_0585 0.88 +1.3
732,307 + +0.6
732,308 - -0.2
732,317 - +0.5
732,444 + Sama_0586 0.14 -1.0
732,444 + Sama_0586 0.14 +0.0
732,444 + Sama_0586 0.14 +0.5
732,444 + Sama_0586 0.14 -0.8
732,445 - Sama_0586 0.14 -0.4
732,502 - Sama_0586 0.21 -1.4
732,502 - Sama_0586 0.21 -1.9
732,562 + Sama_0586 0.27 -1.0
732,579 + Sama_0586 0.29 -1.2
732,637 + Sama_0586 0.35 +0.3
732,637 + Sama_0586 0.35 -1.5
732,638 - Sama_0586 0.36 +0.6
732,638 - Sama_0586 0.36 +0.4
732,638 - Sama_0586 0.36 -0.4
732,638 - Sama_0586 0.36 +0.3
732,638 - Sama_0586 0.36 -0.8
732,638 - Sama_0586 0.36 +0.9
732,644 + Sama_0586 0.36 +0.6
732,644 + Sama_0586 0.36 +1.6
732,645 - Sama_0586 0.36 -0.4
732,645 - Sama_0586 0.36 -0.3
732,645 - Sama_0586 0.36 -0.4
732,645 - Sama_0586 0.36 +0.2
732,730 + Sama_0586 0.46 -1.0
732,871 + Sama_0586 0.61 +0.2
732,872 - Sama_0586 0.61 +0.0
732,943 + Sama_0586 0.69 +0.7
732,944 - Sama_0586 0.69 -0.3
732,944 - Sama_0586 0.69 +0.8
732,944 - Sama_0586 0.69 +0.8
732,944 - Sama_0586 0.69 +1.3
732,973 - Sama_0586 0.72 -0.0
732,973 - Sama_0586 0.72 +1.2
732,987 + Sama_0586 0.74 -0.1
733,250 + -1.2
733,261 + +0.7
733,266 - -1.5
733,266 - +0.1
733,282 + +0.6
733,335 + -1.5
733,335 + -0.7
733,335 + +1.9
733,335 + +1.0
733,335 + -0.2
733,335 + -0.4
733,336 - +0.6
733,350 + +0.2
733,350 + -0.3
733,350 + -2.5
733,350 + +0.7
733,350 + -0.1
733,351 - -0.7
733,493 + -0.2
733,507 + +0.4
733,516 + +1.2
733,516 + -0.5
733,549 + -1.7
733,550 - +0.4
733,573 - +0.0
733,583 - -1.5
733,583 - -1.8
733,605 + -3.5
733,606 - +0.0
733,725 + Sama_0587 0.23 -1.4
733,726 - Sama_0587 0.23 -2.6
733,816 + Sama_0587 0.35 -1.4
733,816 + Sama_0587 0.35 -2.8
733,817 - Sama_0587 0.35 -1.8
733,914 + Sama_0587 0.48 -0.4
733,915 - Sama_0587 0.48 -2.9
733,942 + Sama_0587 0.52 -1.2
733,943 - Sama_0587 0.52 -2.7
733,943 - Sama_0587 0.52 -1.4
733,943 - Sama_0587 0.52 -2.0
733,943 - Sama_0587 0.52 -0.7
734,024 + Sama_0587 0.63 -1.0
734,024 + Sama_0587 0.63 -1.8
734,024 + Sama_0587 0.63 -2.1
734,025 - Sama_0587 0.63 -0.7
734,062 + Sama_0587 0.68 -0.4
734,063 - Sama_0587 0.68 -1.5
734,063 - Sama_0587 0.68 -1.2
734,063 - Sama_0587 0.68 -2.2
734,104 + Sama_0587 0.73 -3.0
734,104 + Sama_0587 0.73 +0.6
734,105 - Sama_0587 0.73 -1.7
734,105 - Sama_0587 0.73 -1.4
734,107 + Sama_0587 0.74 -2.1
734,107 + Sama_0587 0.74 -2.6
734,116 - Sama_0587 0.75 -1.0
734,170 - Sama_0587 0.82 -1.0
734,176 - Sama_0587 0.83 -1.2
734,217 - Sama_0587 0.88 -0.4

Or see this region's nucleotide sequence