Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0576 and Sama_0577 are separated by 145 nucleotides Sama_0577 and Sama_0578 are separated by 72 nucleotides Sama_0578 and Sama_0579 are separated by 141 nucleotides
Sama_0576: Sama_0576 - deoxyribonuclease I (RefSeq), at 717,046 to 717,774
_0576
Sama_0577: Sama_0577 - sprT protein, putative (RefSeq), at 717,920 to 718,474
_0577
Sama_0578: Sama_0578 - hypothetical protein (RefSeq), at 718,547 to 719,704
_0578
Sama_0579: Sama_0579 - LysR family transcriptional regulator (RefSeq), at 719,846 to 720,757
_0579
Position (kb) 718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 717.635 kb on + strand, within Sama_0576 at 717.712 kb on - strand at 717.763 kb on + strand at 717.764 kb on - strand at 717.768 kb on - strand at 717.787 kb on + strand at 717.788 kb on - strand at 717.803 kb on + strand at 717.833 kb on + strand at 717.833 kb on + strand at 717.834 kb on - strand at 717.846 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on - strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.900 kb on + strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.901 kb on - strand at 717.902 kb on + strand at 717.902 kb on + strand at 717.946 kb on - strand at 717.969 kb on + strand at 717.969 kb on + strand at 717.970 kb on - strand at 717.976 kb on + strand, within Sama_0577 at 717.977 kb on - strand, within Sama_0577 at 717.994 kb on + strand, within Sama_0577 at 717.994 kb on + strand, within Sama_0577 at 717.995 kb on - strand, within Sama_0577 at 718.041 kb on + strand, within Sama_0577 at 718.041 kb on + strand, within Sama_0577 at 718.042 kb on - strand, within Sama_0577 at 718.048 kb on + strand, within Sama_0577 at 718.049 kb on - strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.078 kb on + strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.079 kb on - strand, within Sama_0577 at 718.255 kb on + strand, within Sama_0577 at 718.272 kb on + strand, within Sama_0577 at 718.272 kb on + strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.273 kb on - strand, within Sama_0577 at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.475 kb on - strand at 718.503 kb on + strand at 718.503 kb on + strand at 718.503 kb on + strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.504 kb on - strand at 718.506 kb on + strand at 718.506 kb on + strand at 718.506 kb on + strand at 718.506 kb on + strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.507 kb on - strand at 718.548 kb on + strand at 718.549 kb on - strand at 718.571 kb on + strand at 718.571 kb on + strand at 718.572 kb on - strand at 718.572 kb on - strand at 718.572 kb on - strand at 718.595 kb on + strand at 718.621 kb on - strand at 718.639 kb on + strand at 718.639 kb on + strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.640 kb on - strand at 718.642 kb on - strand at 718.699 kb on - strand, within Sama_0578 at 718.740 kb on - strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.830 kb on + strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.831 kb on - strand, within Sama_0578 at 718.952 kb on + strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 718.953 kb on - strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.038 kb on + strand, within Sama_0578 at 719.039 kb on - strand, within Sama_0578 at 719.039 kb on - strand, within Sama_0578 at 719.042 kb on + strand, within Sama_0578 at 719.068 kb on - strand, within Sama_0578 at 719.168 kb on - strand, within Sama_0578 at 719.173 kb on + strand, within Sama_0578 at 719.173 kb on + strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.174 kb on - strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.175 kb on + strand, within Sama_0578 at 719.176 kb on - strand, within Sama_0578 at 719.176 kb on - strand, within Sama_0578 at 719.201 kb on - strand, within Sama_0578 at 719.222 kb on + strand, within Sama_0578 at 719.222 kb on + strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.223 kb on - strand, within Sama_0578 at 719.276 kb on + strand, within Sama_0578 at 719.277 kb on - strand, within Sama_0578 at 719.367 kb on + strand, within Sama_0578 at 719.368 kb on - strand, within Sama_0578 at 719.368 kb on - strand, within Sama_0578 at 719.418 kb on + strand, within Sama_0578 at 719.418 kb on + strand, within Sama_0578 at 719.419 kb on - strand, within Sama_0578 at 719.437 kb on + strand, within Sama_0578 at 719.437 kb on + strand, within Sama_0578 at 719.474 kb on + strand, within Sama_0578 at 719.490 kb on + strand, within Sama_0578 at 719.491 kb on - strand, within Sama_0578 at 719.491 kb on - strand, within Sama_0578 at 719.569 kb on - strand, within Sama_0578 at 719.579 kb on + strand, within Sama_0578 at 719.579 kb on + strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.580 kb on - strand, within Sama_0578 at 719.692 kb on + strand at 719.692 kb on + strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.693 kb on - strand at 719.699 kb on + strand at 719.748 kb on + strand at 719.748 kb on + strand at 719.754 kb on + strand at 719.755 kb on - strand at 719.755 kb on - strand at 719.755 kb on - strand at 719.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 717,635 + Sama_0576 0.81 +0.2 717,712 - -0.6 717,763 + +0.1 717,764 - +0.2 717,768 - +0.5 717,787 + +0.1 717,788 - -0.5 717,803 + +0.9 717,833 + -1.0 717,833 + -1.0 717,834 - +0.5 717,846 + +0.7 717,900 + +0.0 717,900 + -1.2 717,900 + -1.5 717,900 + -1.0 717,900 + -0.6 717,900 + -0.2 717,900 + -1.2 717,900 - +0.1 717,900 + +0.0 717,900 + +0.4 717,900 + -0.7 717,900 + -0.3 717,901 - +0.9 717,901 - -0.5 717,901 - +1.1 717,901 - +0.1 717,901 - -0.6 717,901 - +0.8 717,901 - -1.0 717,901 - -1.1 717,901 - -1.2 717,902 + +0.3 717,902 + +0.4 717,946 - -0.2 717,969 + -1.8 717,969 + -1.5 717,970 - -2.0 717,976 + Sama_0577 0.10 -0.2 717,977 - Sama_0577 0.10 +1.1 717,994 + Sama_0577 0.13 -0.1 717,994 + Sama_0577 0.13 +0.5 717,995 - Sama_0577 0.14 +0.3 718,041 + Sama_0577 0.22 -0.7 718,041 + Sama_0577 0.22 -0.7 718,042 - Sama_0577 0.22 +0.5 718,048 + Sama_0577 0.23 -2.0 718,049 - Sama_0577 0.23 +0.6 718,078 + Sama_0577 0.28 -1.2 718,078 + Sama_0577 0.28 -2.9 718,078 + Sama_0577 0.28 -0.5 718,078 + Sama_0577 0.28 +0.0 718,078 + Sama_0577 0.28 -1.4 718,079 - Sama_0577 0.29 -0.1 718,079 - Sama_0577 0.29 +0.2 718,079 - Sama_0577 0.29 +0.4 718,079 - Sama_0577 0.29 -1.0 718,255 + Sama_0577 0.60 -0.5 718,272 + Sama_0577 0.63 -1.9 718,272 + Sama_0577 0.63 -0.2 718,273 - Sama_0577 0.64 -0.5 718,273 - Sama_0577 0.64 +1.2 718,273 - Sama_0577 0.64 -1.2 718,273 - Sama_0577 0.64 +0.0 718,273 - Sama_0577 0.64 -0.0 718,273 - Sama_0577 0.64 +0.8 718,273 - Sama_0577 0.64 +1.1 718,273 - Sama_0577 0.64 -1.0 718,474 + +1.0 718,474 + +0.2 718,474 + -1.3 718,475 - -0.1 718,503 + -2.6 718,503 + +1.1 718,503 + -0.0 718,504 - +2.9 718,504 - -0.1 718,504 - -0.1 718,504 - +0.6 718,504 - -0.4 718,504 - -1.4 718,504 - +0.6 718,504 - +0.0 718,506 + +1.8 718,506 + +1.2 718,506 + -0.2 718,506 + +1.1 718,507 - -1.0 718,507 - -0.8 718,507 - +0.6 718,507 - -0.6 718,507 - -0.9 718,548 + -1.2 718,549 - -0.7 718,571 + +0.7 718,571 + -0.6 718,572 - +0.8 718,572 - -0.0 718,572 - -1.0 718,595 + -0.5 718,621 - +0.2 718,639 + -0.4 718,639 + -0.6 718,640 - +0.8 718,640 - -2.5 718,640 - +0.1 718,640 - +1.6 718,640 - +0.5 718,640 - +1.1 718,640 - -2.2 718,640 - +0.4 718,642 - -0.4 718,699 - Sama_0578 0.13 -1.5 718,740 - Sama_0578 0.17 -1.0 718,830 + Sama_0578 0.24 -0.7 718,830 + Sama_0578 0.24 -0.1 718,830 + Sama_0578 0.24 +0.5 718,830 + Sama_0578 0.24 -2.0 718,830 + Sama_0578 0.24 -0.5 718,831 - Sama_0578 0.25 -1.7 718,831 - Sama_0578 0.25 -0.6 718,831 - Sama_0578 0.25 +0.7 718,831 - Sama_0578 0.25 -0.4 718,831 - Sama_0578 0.25 -0.7 718,831 - Sama_0578 0.25 -1.0 718,952 + Sama_0578 0.35 -0.2 718,953 - Sama_0578 0.35 +0.8 718,953 - Sama_0578 0.35 +0.9 718,953 - Sama_0578 0.35 +0.8 719,038 + Sama_0578 0.42 -0.1 719,038 + Sama_0578 0.42 -1.4 719,038 + Sama_0578 0.42 -0.5 719,039 - Sama_0578 0.42 +0.9 719,039 - Sama_0578 0.42 +0.9 719,042 + Sama_0578 0.43 -0.0 719,068 - Sama_0578 0.45 +1.0 719,168 - Sama_0578 0.54 -2.1 719,173 + Sama_0578 0.54 +0.1 719,173 + Sama_0578 0.54 -2.1 719,174 - Sama_0578 0.54 +0.4 719,174 - Sama_0578 0.54 +1.0 719,174 - Sama_0578 0.54 -2.3 719,174 - Sama_0578 0.54 +0.1 719,175 + Sama_0578 0.54 +1.6 719,175 + Sama_0578 0.54 +0.0 719,175 + Sama_0578 0.54 +0.4 719,175 + Sama_0578 0.54 +0.7 719,176 - Sama_0578 0.54 -0.1 719,176 - Sama_0578 0.54 -0.8 719,201 - Sama_0578 0.56 +1.3 719,222 + Sama_0578 0.58 +0.5 719,222 + Sama_0578 0.58 -0.7 719,223 - Sama_0578 0.58 +1.6 719,223 - Sama_0578 0.58 -0.4 719,223 - Sama_0578 0.58 -0.9 719,223 - Sama_0578 0.58 +0.6 719,276 + Sama_0578 0.63 +1.1 719,277 - Sama_0578 0.63 -2.3 719,367 + Sama_0578 0.71 -1.4 719,368 - Sama_0578 0.71 -0.7 719,368 - Sama_0578 0.71 -0.6 719,418 + Sama_0578 0.75 +0.7 719,418 + Sama_0578 0.75 +0.3 719,419 - Sama_0578 0.75 -0.3 719,437 + Sama_0578 0.77 -0.9 719,437 + Sama_0578 0.77 -1.2 719,474 + Sama_0578 0.80 -0.5 719,490 + Sama_0578 0.81 -1.4 719,491 - Sama_0578 0.82 -2.1 719,491 - Sama_0578 0.82 -0.4 719,569 - Sama_0578 0.88 +0.2 719,579 + Sama_0578 0.89 -0.2 719,579 + Sama_0578 0.89 -2.1 719,580 - Sama_0578 0.89 -1.1 719,580 - Sama_0578 0.89 +0.1 719,580 - Sama_0578 0.89 +0.4 719,580 - Sama_0578 0.89 -0.2 719,692 + -0.5 719,692 + -0.2 719,693 - -0.6 719,693 - +1.5 719,693 - +0.6 719,693 - -0.3 719,693 - -0.7 719,693 - +0.3 719,699 + -0.8 719,748 + +0.2 719,748 + +0.0 719,754 + -0.5 719,755 - -0.1 719,755 - -0.2 719,755 - +1.3 719,847 + -0.2
Or see this region's nucleotide sequence