Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0557 and Sama_0558 are separated by 120 nucleotides Sama_0558 and Sama_0559 are separated by 121 nucleotides
Sama_0557: Sama_0557 - no description, at 693,039 to 693,530
_0557
Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433
_0558
Sama_0559: Sama_0559 - hypothetical protein (RefSeq), at 694,555 to 695,007
_0559
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 692.656 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.697 kb on + strand at 692.705 kb on + strand at 692.705 kb on + strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.796 kb on + strand at 692.796 kb on + strand at 692.822 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.926 kb on + strand at 692.927 kb on - strand at 692.931 kb on + strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.936 kb on - strand at 692.936 kb on - strand at 693.008 kb on + strand at 693.008 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.012 kb on - strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.058 kb on + strand at 693.059 kb on - strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.123 kb on + strand, within Sama_0557 at 693.124 kb on - strand, within Sama_0557 at 693.136 kb on + strand, within Sama_0557 at 693.137 kb on - strand, within Sama_0557 at 693.243 kb on + strand, within Sama_0557 at 693.244 kb on - strand, within Sama_0557 at 693.271 kb on - strand, within Sama_0557 at 693.297 kb on + strand, within Sama_0557 at 693.372 kb on + strand, within Sama_0557 at 693.373 kb on - strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.528 kb on + strand at 693.529 kb on - strand at 693.530 kb on + strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.548 kb on + strand at 693.549 kb on - strand at 693.618 kb on - strand at 693.618 kb on - strand at 693.633 kb on + strand at 693.633 kb on + strand at 693.634 kb on - strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.637 kb on - strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.666 kb on - strand at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.752 kb on - strand, within Sama_0558 at 693.871 kb on + strand, within Sama_0558 at 693.945 kb on + strand, within Sama_0558 at 693.946 kb on - strand, within Sama_0558 at 693.989 kb on - strand, within Sama_0558 at 693.994 kb on + strand, within Sama_0558 at 693.995 kb on - strand, within Sama_0558 at 694.006 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.217 kb on + strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.233 kb on + strand, within Sama_0558 at 694.234 kb on - strand, within Sama_0558 at 694.252 kb on + strand, within Sama_0558 at 694.253 kb on - strand, within Sama_0558 at 694.368 kb on - strand at 694.403 kb on - strand at 694.403 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.556 kb on + strand at 694.556 kb on + strand at 694.557 kb on - strand at 694.568 kb on + strand at 694.602 kb on + strand, within Sama_0559 at 694.602 kb on + strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.716 kb on + strand, within Sama_0559 at 694.749 kb on - strand, within Sama_0559 at 694.796 kb on + strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.864 kb on + strand, within Sama_0559 at 694.865 kb on - strand, within Sama_0559 at 694.916 kb on - strand, within Sama_0559 at 694.963 kb on - strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.971 kb on - strand at 694.971 kb on - strand at 694.981 kb on - strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 695.055 kb on + strand at 695.056 kb on - strand at 695.056 kb on - strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.166 kb on + strand at 695.187 kb on + strand at 695.188 kb on - strand at 695.198 kb on - strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.278 kb on - strand at 695.281 kb on + strand at 695.282 kb on - strand at 695.320 kb on + strand at 695.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 692,656 + +0.1 692,669 + -2.8 692,669 + -1.4 692,669 + -1.7 692,670 - -1.4 692,670 - -1.8 692,697 + +0.4 692,705 + +0.6 692,705 + +2.6 692,706 - -1.8 692,706 - -2.9 692,706 - -3.5 692,706 - -0.9 692,769 + -0.5 692,769 + +0.1 692,769 + -0.4 692,796 + -1.2 692,796 + -1.0 692,822 + -1.4 692,918 + -1.4 692,918 + -0.7 692,918 + -0.5 692,926 + +0.9 692,927 - -0.4 692,931 + -0.1 692,932 - -1.9 692,932 - -0.4 692,932 - -1.9 692,932 - -0.9 692,936 - -0.2 692,936 - -0.1 693,008 + -0.2 693,008 + +0.1 693,011 + -0.5 693,011 + +0.4 693,011 + -1.1 693,012 - +1.1 693,040 + -1.8 693,040 + -0.5 693,040 + +0.6 693,040 + +0.4 693,040 + -0.1 693,040 + -0.2 693,041 - -1.5 693,041 - +0.1 693,041 - -1.3 693,041 - -3.1 693,058 + +0.0 693,059 - -0.4 693,076 + +0.5 693,076 + +0.6 693,076 + -1.6 693,076 + +1.3 693,076 + +0.2 693,076 + +0.7 693,076 + +0.6 693,076 + +0.7 693,076 + +1.1 693,076 + -1.9 693,077 - -2.2 693,077 - +0.6 693,077 - -1.5 693,077 - -1.5 693,089 + Sama_0557 0.10 +0.3 693,089 + Sama_0557 0.10 -0.5 693,089 + Sama_0557 0.10 +0.2 693,090 - Sama_0557 0.10 -1.5 693,090 - Sama_0557 0.10 -1.3 693,090 - Sama_0557 0.10 -1.5 693,090 - Sama_0557 0.10 +0.9 693,090 - Sama_0557 0.10 -1.0 693,090 - Sama_0557 0.10 -1.7 693,090 - Sama_0557 0.10 -2.2 693,090 - Sama_0557 0.10 -1.7 693,109 + Sama_0557 0.14 +0.6 693,109 + Sama_0557 0.14 -1.4 693,110 - Sama_0557 0.14 -2.5 693,110 - Sama_0557 0.14 -2.4 693,110 - Sama_0557 0.14 -1.7 693,110 - Sama_0557 0.14 +1.1 693,110 - Sama_0557 0.14 -0.1 693,123 + Sama_0557 0.17 -0.4 693,124 - Sama_0557 0.17 -1.3 693,136 + Sama_0557 0.20 -1.4 693,137 - Sama_0557 0.20 -0.4 693,243 + Sama_0557 0.41 +0.9 693,244 - Sama_0557 0.42 -0.7 693,271 - Sama_0557 0.47 +0.4 693,297 + Sama_0557 0.52 -1.4 693,372 + Sama_0557 0.68 -0.9 693,373 - Sama_0557 0.68 +0.1 693,402 + Sama_0557 0.74 +0.3 693,402 + Sama_0557 0.74 -0.8 693,402 + Sama_0557 0.74 +3.6 693,428 - Sama_0557 0.79 -0.1 693,428 - Sama_0557 0.79 +0.6 693,435 + Sama_0557 0.80 -0.5 693,435 + Sama_0557 0.80 -0.2 693,435 + Sama_0557 0.80 -0.5 693,436 - Sama_0557 0.81 -1.5 693,436 - Sama_0557 0.81 -1.1 693,436 - Sama_0557 0.81 -1.3 693,438 - Sama_0557 0.81 +0.1 693,438 - Sama_0557 0.81 -2.5 693,485 + -0.9 693,485 + -1.8 693,485 + -0.6 693,485 + +1.3 693,485 + -0.7 693,485 + -1.5 693,485 + +0.4 693,485 + -0.6 693,486 - -0.7 693,486 - -0.1 693,486 - -2.1 693,486 - -1.2 693,486 - +0.1 693,528 + +0.1 693,529 - +0.1 693,530 + +0.8 693,531 - -0.5 693,531 - +0.8 693,531 - -1.9 693,531 - -1.8 693,531 - -0.7 693,531 - -1.8 693,531 - +0.5 693,548 + -0.4 693,549 - -0.2 693,618 - -1.4 693,618 - +0.1 693,633 + -1.4 693,633 + -1.3 693,634 - -0.1 693,636 + -0.6 693,636 + +0.3 693,636 + -0.9 693,637 - -2.3 693,662 + -0.3 693,662 + +1.1 693,662 + -1.9 693,662 + +0.2 693,663 - -0.3 693,663 - +0.5 693,663 - -0.9 693,663 - +1.9 693,663 - -0.0 693,663 - -1.4 693,666 - -0.4 693,740 + Sama_0558 0.11 +0.6 693,740 + Sama_0558 0.11 +1.2 693,740 + Sama_0558 0.11 -0.5 693,740 + Sama_0558 0.11 +1.1 693,740 + Sama_0558 0.11 +0.1 693,741 - Sama_0558 0.11 -0.8 693,741 - Sama_0558 0.11 +0.4 693,741 - Sama_0558 0.11 +0.1 693,741 - Sama_0558 0.11 +0.9 693,741 - Sama_0558 0.11 +1.2 693,741 - Sama_0558 0.11 +0.9 693,741 - Sama_0558 0.11 -1.0 693,741 - Sama_0558 0.11 -0.3 693,752 - Sama_0558 0.13 +0.3 693,871 + Sama_0558 0.28 -2.6 693,945 + Sama_0558 0.38 +1.5 693,946 - Sama_0558 0.38 -0.9 693,989 - Sama_0558 0.43 -0.6 693,994 + Sama_0558 0.44 +0.8 693,995 - Sama_0558 0.44 -1.4 694,006 + Sama_0558 0.45 +1.2 694,012 + Sama_0558 0.46 -0.9 694,012 + Sama_0558 0.46 -0.7 694,012 + Sama_0558 0.46 -0.2 694,012 + Sama_0558 0.46 -0.3 694,012 + Sama_0558 0.46 +0.9 694,012 + Sama_0558 0.46 +0.6 694,012 + Sama_0558 0.46 +0.9 694,013 - Sama_0558 0.46 +0.3 694,013 - Sama_0558 0.46 +1.1 694,013 - Sama_0558 0.46 -1.1 694,013 - Sama_0558 0.46 -2.4 694,030 + Sama_0558 0.48 +0.5 694,030 + Sama_0558 0.48 +0.7 694,031 - Sama_0558 0.49 -2.1 694,031 - Sama_0558 0.49 +0.2 694,031 - Sama_0558 0.49 -0.8 694,031 - Sama_0558 0.49 -0.1 694,091 - Sama_0558 0.56 +0.1 694,091 - Sama_0558 0.56 +0.6 694,132 + Sama_0558 0.61 -0.8 694,132 + Sama_0558 0.61 -0.1 694,133 - Sama_0558 0.62 -0.9 694,133 - Sama_0558 0.62 -0.1 694,133 - Sama_0558 0.62 -2.4 694,217 + Sama_0558 0.72 +0.1 694,218 - Sama_0558 0.72 +0.9 694,218 - Sama_0558 0.72 -0.3 694,233 + Sama_0558 0.74 -0.4 694,234 - Sama_0558 0.74 +0.4 694,252 + Sama_0558 0.77 +0.5 694,253 - Sama_0558 0.77 -0.4 694,368 - +1.0 694,403 - -0.7 694,403 - -0.9 694,470 - -0.3 694,470 - +1.0 694,470 - +0.1 694,470 - -1.5 694,556 + -0.4 694,556 + -1.6 694,557 - -1.6 694,568 + +0.2 694,602 + Sama_0559 0.10 +0.6 694,602 + Sama_0559 0.10 +0.6 694,603 - Sama_0559 0.11 -0.7 694,603 - Sama_0559 0.11 +0.2 694,633 + Sama_0559 0.17 -0.2 694,633 + Sama_0559 0.17 -0.4 694,633 + Sama_0559 0.17 +0.1 694,633 + Sama_0559 0.17 +0.4 694,634 - Sama_0559 0.17 -1.2 694,634 - Sama_0559 0.17 -1.2 694,634 - Sama_0559 0.17 -0.3 694,634 - Sama_0559 0.17 +1.5 694,634 - Sama_0559 0.17 +0.2 694,637 + Sama_0559 0.18 -0.4 694,637 + Sama_0559 0.18 -0.0 694,637 + Sama_0559 0.18 -2.2 694,638 - Sama_0559 0.18 -1.8 694,638 - Sama_0559 0.18 -0.1 694,638 - Sama_0559 0.18 +1.6 694,638 - Sama_0559 0.18 +0.9 694,716 + Sama_0559 0.36 +0.6 694,749 - Sama_0559 0.43 +0.1 694,796 + Sama_0559 0.53 -0.2 694,797 - Sama_0559 0.53 -0.4 694,797 - Sama_0559 0.53 -0.1 694,797 - Sama_0559 0.53 +1.1 694,864 + Sama_0559 0.68 -0.2 694,865 - Sama_0559 0.68 +2.2 694,916 - Sama_0559 0.80 +1.2 694,963 - -0.1 694,970 + +0.4 694,970 + +1.3 694,970 + -0.4 694,970 + +0.4 694,971 - +0.8 694,971 - +0.3 694,981 - -0.6 694,982 + -0.7 694,982 + -0.1 694,982 + +0.0 694,982 + +1.2 694,982 + -1.3 694,982 + -0.2 694,983 - +0.6 694,983 - +0.2 694,983 - +0.7 694,983 - +0.2 694,983 - -0.6 694,983 - +0.5 694,983 - -0.2 695,055 + -0.1 695,056 - +0.1 695,056 - +0.9 695,061 + -0.6 695,061 + -1.3 695,061 + -0.8 695,061 + +0.2 695,061 + -2.2 695,061 + +0.6 695,061 + +0.6 695,061 + -0.8 695,061 + +0.4 695,061 + -1.3 695,062 - -0.1 695,062 - -0.7 695,062 - -0.1 695,062 - -0.1 695,062 - +0.6 695,062 - +0.6 695,062 - +0.6 695,062 - -1.4 695,062 - -0.2 695,166 + -0.9 695,187 + +0.3 695,188 - +1.4 695,198 - +0.2 695,277 + -0.2 695,277 + +0.8 695,277 + +0.4 695,278 - +1.5 695,281 + -2.5 695,282 - +0.6 695,320 + +0.5 695,358 + -0.5
Or see this region's nucleotide sequence