Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0556 and Sama_0557 are separated by 494 nucleotides Sama_0557 and Sama_0558 are separated by 120 nucleotides
Sama_0556: Sama_0556 - hypothetical protein (RefSeq), at 688,759 to 692,544
_0556
Sama_0557: Sama_0557 - no description, at 693,039 to 693,530
_0557
Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433
_0558
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 692.053 kb on + strand, within Sama_0556 at 692.053 kb on + strand, within Sama_0556 at 692.053 kb on + strand, within Sama_0556 at 692.053 kb on + strand, within Sama_0556 at 692.054 kb on - strand, within Sama_0556 at 692.070 kb on - strand, within Sama_0556 at 692.124 kb on + strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.142 kb on + strand, within Sama_0556 at 692.142 kb on + strand, within Sama_0556 at 692.143 kb on - strand, within Sama_0556 at 692.179 kb on + strand at 692.179 kb on + strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.206 kb on + strand at 692.207 kb on - strand at 692.244 kb on - strand at 692.256 kb on + strand at 692.256 kb on + strand at 692.256 kb on + strand at 692.257 kb on - strand at 692.257 kb on - strand at 692.321 kb on + strand at 692.321 kb on + strand at 692.321 kb on + strand at 692.322 kb on - strand at 692.322 kb on - strand at 692.322 kb on - strand at 692.328 kb on + strand at 692.328 kb on + strand at 692.362 kb on - strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.367 kb on + strand at 692.367 kb on + strand at 692.368 kb on - strand at 692.382 kb on + strand at 692.391 kb on + strand at 692.463 kb on + strand at 692.473 kb on - strand at 692.473 kb on - strand at 692.536 kb on - strand at 692.547 kb on + strand at 692.555 kb on + strand at 692.555 kb on + strand at 692.556 kb on - strand at 692.566 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.600 kb on - strand at 692.620 kb on - strand at 692.635 kb on - strand at 692.656 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.697 kb on + strand at 692.705 kb on + strand at 692.705 kb on + strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.796 kb on + strand at 692.796 kb on + strand at 692.822 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.926 kb on + strand at 692.927 kb on - strand at 692.931 kb on + strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.936 kb on - strand at 692.936 kb on - strand at 693.008 kb on + strand at 693.008 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.012 kb on - strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.058 kb on + strand at 693.059 kb on - strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.123 kb on + strand, within Sama_0557 at 693.124 kb on - strand, within Sama_0557 at 693.136 kb on + strand, within Sama_0557 at 693.137 kb on - strand, within Sama_0557 at 693.243 kb on + strand, within Sama_0557 at 693.244 kb on - strand, within Sama_0557 at 693.271 kb on - strand, within Sama_0557 at 693.297 kb on + strand, within Sama_0557 at 693.372 kb on + strand, within Sama_0557 at 693.373 kb on - strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.528 kb on + strand at 693.529 kb on - strand at 693.530 kb on + strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.548 kb on + strand at 693.549 kb on - strand at 693.618 kb on - strand at 693.618 kb on - strand at 693.633 kb on + strand at 693.633 kb on + strand at 693.634 kb on - strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.637 kb on - strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.666 kb on - strand at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.752 kb on - strand, within Sama_0558 at 693.871 kb on + strand, within Sama_0558 at 693.945 kb on + strand, within Sama_0558 at 693.946 kb on - strand, within Sama_0558 at 693.989 kb on - strand, within Sama_0558 at 693.994 kb on + strand, within Sama_0558 at 693.995 kb on - strand, within Sama_0558 at 694.006 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.217 kb on + strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.233 kb on + strand, within Sama_0558 at 694.234 kb on - strand, within Sama_0558 at 694.252 kb on + strand, within Sama_0558 at 694.253 kb on - strand, within Sama_0558 at 694.368 kb on - strand at 694.403 kb on - strand at 694.403 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 692,053 + Sama_0556 0.87 -0.0 692,053 + Sama_0556 0.87 -0.7 692,053 + Sama_0556 0.87 +1.6 692,053 + Sama_0556 0.87 -2.1 692,054 - Sama_0556 0.87 -1.2 692,070 - Sama_0556 0.87 +0.1 692,124 + Sama_0556 0.89 -1.4 692,125 - Sama_0556 0.89 +0.0 692,125 - Sama_0556 0.89 -1.4 692,125 - Sama_0556 0.89 -3.1 692,125 - Sama_0556 0.89 +0.6 692,125 - Sama_0556 0.89 -0.6 692,142 + Sama_0556 0.89 -0.4 692,142 + Sama_0556 0.89 +0.2 692,143 - Sama_0556 0.89 +0.3 692,179 + +1.0 692,179 + -0.4 692,180 - +0.0 692,180 - -0.9 692,180 - -0.9 692,180 - +0.5 692,180 - +0.6 692,180 - +0.8 692,206 + -2.9 692,207 - -0.4 692,244 - -1.2 692,256 + -1.3 692,256 + -1.3 692,256 + +0.5 692,257 - -0.7 692,257 - +1.6 692,321 + -0.4 692,321 + -1.5 692,321 + -0.4 692,322 - -2.2 692,322 - -1.2 692,322 - +0.8 692,328 + -1.5 692,328 + -1.2 692,362 - -2.6 692,363 + -1.4 692,363 + -0.7 692,363 + -0.4 692,363 + -0.8 692,363 + -0.6 692,363 + -0.9 692,364 - -0.2 692,364 - -0.6 692,364 - -1.5 692,364 - -0.9 692,364 - +2.1 692,364 - -0.9 692,364 - +1.1 692,364 - +1.1 692,364 - -0.7 692,367 + -0.7 692,367 + -0.7 692,368 - -0.9 692,382 + -1.8 692,391 + +0.6 692,463 + +0.2 692,473 - +1.8 692,473 - -0.7 692,536 - -0.8 692,547 + +0.7 692,555 + -0.8 692,555 + +0.1 692,556 - +0.8 692,566 + -0.8 692,599 + -2.3 692,599 + +0.7 692,599 + +0.1 692,599 + -1.4 692,599 + +0.7 692,599 + +0.1 692,600 - -2.1 692,620 - -1.5 692,635 - -2.2 692,656 + +0.1 692,669 + -2.8 692,669 + -1.4 692,669 + -1.7 692,670 - -1.4 692,670 - -1.8 692,697 + +0.4 692,705 + +0.6 692,705 + +2.6 692,706 - -1.8 692,706 - -2.9 692,706 - -3.5 692,706 - -0.9 692,769 + -0.5 692,769 + +0.1 692,769 + -0.4 692,796 + -1.2 692,796 + -1.0 692,822 + -1.4 692,918 + -1.4 692,918 + -0.7 692,918 + -0.5 692,926 + +0.9 692,927 - -0.4 692,931 + -0.1 692,932 - -1.9 692,932 - -0.4 692,932 - -1.9 692,932 - -0.9 692,936 - -0.2 692,936 - -0.1 693,008 + -0.2 693,008 + +0.1 693,011 + -0.5 693,011 + +0.4 693,011 + -1.1 693,012 - +1.1 693,040 + -1.8 693,040 + -0.5 693,040 + +0.6 693,040 + +0.4 693,040 + -0.1 693,040 + -0.2 693,041 - -1.5 693,041 - +0.1 693,041 - -1.3 693,041 - -3.1 693,058 + +0.0 693,059 - -0.4 693,076 + +0.5 693,076 + +0.6 693,076 + -1.6 693,076 + +1.3 693,076 + +0.2 693,076 + +0.7 693,076 + +0.6 693,076 + +0.7 693,076 + +1.1 693,076 + -1.9 693,077 - -2.2 693,077 - +0.6 693,077 - -1.5 693,077 - -1.5 693,089 + Sama_0557 0.10 +0.3 693,089 + Sama_0557 0.10 -0.5 693,089 + Sama_0557 0.10 +0.2 693,090 - Sama_0557 0.10 -1.5 693,090 - Sama_0557 0.10 -1.3 693,090 - Sama_0557 0.10 -1.5 693,090 - Sama_0557 0.10 +0.9 693,090 - Sama_0557 0.10 -1.0 693,090 - Sama_0557 0.10 -1.7 693,090 - Sama_0557 0.10 -2.2 693,090 - Sama_0557 0.10 -1.7 693,109 + Sama_0557 0.14 +0.6 693,109 + Sama_0557 0.14 -1.4 693,110 - Sama_0557 0.14 -2.5 693,110 - Sama_0557 0.14 -2.4 693,110 - Sama_0557 0.14 -1.7 693,110 - Sama_0557 0.14 +1.1 693,110 - Sama_0557 0.14 -0.1 693,123 + Sama_0557 0.17 -0.4 693,124 - Sama_0557 0.17 -1.3 693,136 + Sama_0557 0.20 -1.4 693,137 - Sama_0557 0.20 -0.4 693,243 + Sama_0557 0.41 +0.9 693,244 - Sama_0557 0.42 -0.7 693,271 - Sama_0557 0.47 +0.4 693,297 + Sama_0557 0.52 -1.4 693,372 + Sama_0557 0.68 -0.9 693,373 - Sama_0557 0.68 +0.1 693,402 + Sama_0557 0.74 +0.3 693,402 + Sama_0557 0.74 -0.8 693,402 + Sama_0557 0.74 +3.6 693,428 - Sama_0557 0.79 -0.1 693,428 - Sama_0557 0.79 +0.6 693,435 + Sama_0557 0.80 -0.5 693,435 + Sama_0557 0.80 -0.2 693,435 + Sama_0557 0.80 -0.5 693,436 - Sama_0557 0.81 -1.5 693,436 - Sama_0557 0.81 -1.1 693,436 - Sama_0557 0.81 -1.3 693,438 - Sama_0557 0.81 +0.1 693,438 - Sama_0557 0.81 -2.5 693,485 + -0.9 693,485 + -1.8 693,485 + -0.6 693,485 + +1.3 693,485 + -0.7 693,485 + -1.5 693,485 + +0.4 693,485 + -0.6 693,486 - -0.7 693,486 - -0.1 693,486 - -2.1 693,486 - -1.2 693,486 - +0.1 693,528 + +0.1 693,529 - +0.1 693,530 + +0.8 693,531 - -0.5 693,531 - +0.8 693,531 - -1.9 693,531 - -1.8 693,531 - -0.7 693,531 - -1.8 693,531 - +0.5 693,548 + -0.4 693,549 - -0.2 693,618 - -1.4 693,618 - +0.1 693,633 + -1.4 693,633 + -1.3 693,634 - -0.1 693,636 + -0.6 693,636 + +0.3 693,636 + -0.9 693,637 - -2.3 693,662 + -0.3 693,662 + +1.1 693,662 + -1.9 693,662 + +0.2 693,663 - -0.3 693,663 - +0.5 693,663 - -0.9 693,663 - +1.9 693,663 - -0.0 693,663 - -1.4 693,666 - -0.4 693,740 + Sama_0558 0.11 +0.6 693,740 + Sama_0558 0.11 +1.2 693,740 + Sama_0558 0.11 -0.5 693,740 + Sama_0558 0.11 +1.1 693,740 + Sama_0558 0.11 +0.1 693,741 - Sama_0558 0.11 -0.8 693,741 - Sama_0558 0.11 +0.4 693,741 - Sama_0558 0.11 +0.1 693,741 - Sama_0558 0.11 +0.9 693,741 - Sama_0558 0.11 +1.2 693,741 - Sama_0558 0.11 +0.9 693,741 - Sama_0558 0.11 -1.0 693,741 - Sama_0558 0.11 -0.3 693,752 - Sama_0558 0.13 +0.3 693,871 + Sama_0558 0.28 -2.6 693,945 + Sama_0558 0.38 +1.5 693,946 - Sama_0558 0.38 -0.9 693,989 - Sama_0558 0.43 -0.6 693,994 + Sama_0558 0.44 +0.8 693,995 - Sama_0558 0.44 -1.4 694,006 + Sama_0558 0.45 +1.2 694,012 + Sama_0558 0.46 -0.9 694,012 + Sama_0558 0.46 -0.7 694,012 + Sama_0558 0.46 -0.2 694,012 + Sama_0558 0.46 -0.3 694,012 + Sama_0558 0.46 +0.9 694,012 + Sama_0558 0.46 +0.6 694,012 + Sama_0558 0.46 +0.9 694,013 - Sama_0558 0.46 +0.3 694,013 - Sama_0558 0.46 +1.1 694,013 - Sama_0558 0.46 -1.1 694,013 - Sama_0558 0.46 -2.4 694,030 + Sama_0558 0.48 +0.5 694,030 + Sama_0558 0.48 +0.7 694,031 - Sama_0558 0.49 -2.1 694,031 - Sama_0558 0.49 +0.2 694,031 - Sama_0558 0.49 -0.8 694,031 - Sama_0558 0.49 -0.1 694,091 - Sama_0558 0.56 +0.1 694,091 - Sama_0558 0.56 +0.6 694,132 + Sama_0558 0.61 -0.8 694,132 + Sama_0558 0.61 -0.1 694,133 - Sama_0558 0.62 -0.9 694,133 - Sama_0558 0.62 -0.1 694,133 - Sama_0558 0.62 -2.4 694,217 + Sama_0558 0.72 +0.1 694,218 - Sama_0558 0.72 +0.9 694,218 - Sama_0558 0.72 -0.3 694,233 + Sama_0558 0.74 -0.4 694,234 - Sama_0558 0.74 +0.4 694,252 + Sama_0558 0.77 +0.5 694,253 - Sama_0558 0.77 -0.4 694,368 - +1.0 694,403 - -0.7 694,403 - -0.9 694,470 - -0.3 694,470 - +1.0 694,470 - +0.1 694,470 - -1.5
Or see this region's nucleotide sequence