Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0537 and dipZ are separated by 123 nucleotides dipZ and Sama_0539 overlap by 4 nucleotides Sama_0539 and Sama_0540 are separated by 212 nucleotides
Sama_0537: Sama_0537 - glutathione-regulated potassium-efflux system protein KefC, putative (RefSeq), at 661,514 to 663,121
_0537
Sama_0538: dipZ - thiol:disulfide interchange protein precursor (RefSeq), at 663,245 to 665,068
dipZ
Sama_0539: Sama_0539 - periplasmic divalent cation tolerance protein CutA (RefSeq), at 665,065 to 665,397
_0539
Sama_0540: Sama_0540 - FxsA cytoplasmic membrane protein (RefSeq), at 665,610 to 666,200
_0540
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 662.336 kb on + strand, within Sama_0537 at 662.337 kb on - strand, within Sama_0537 at 662.363 kb on + strand, within Sama_0537 at 662.377 kb on - strand, within Sama_0537 at 662.424 kb on - strand, within Sama_0537 at 662.656 kb on + strand, within Sama_0537 at 662.656 kb on + strand, within Sama_0537 at 662.656 kb on + strand, within Sama_0537 at 662.657 kb on - strand, within Sama_0537 at 662.674 kb on + strand, within Sama_0537 at 662.674 kb on + strand, within Sama_0537 at 662.675 kb on - strand, within Sama_0537 at 662.694 kb on + strand, within Sama_0537 at 662.707 kb on + strand, within Sama_0537 at 663.016 kb on + strand at 663.016 kb on + strand at 663.016 kb on + strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.017 kb on - strand at 663.042 kb on + strand at 663.042 kb on + strand at 663.047 kb on + strand at 663.047 kb on + strand at 663.047 kb on + strand at 663.047 kb on + strand at 663.047 kb on + strand at 663.047 kb on + strand at 663.048 kb on - strand at 663.048 kb on - strand at 663.048 kb on - strand at 663.048 kb on - strand at 663.131 kb on + strand at 663.131 kb on + strand at 663.132 kb on - strand at 663.139 kb on - strand at 663.147 kb on + strand at 663.149 kb on + strand at 663.149 kb on + strand at 663.150 kb on - strand at 663.158 kb on + strand at 663.164 kb on - strand at 663.174 kb on - strand at 663.177 kb on + strand at 663.224 kb on - strand at 663.227 kb on + strand at 663.227 kb on + strand at 663.227 kb on + strand at 663.227 kb on + strand at 663.228 kb on - strand at 663.228 kb on - strand at 663.229 kb on + strand at 663.230 kb on - strand at 663.230 kb on - strand at 663.230 kb on - strand at 663.246 kb on + strand at 663.246 kb on + strand at 663.247 kb on - strand at 663.311 kb on + strand at 663.375 kb on + strand at 663.375 kb on + strand at 663.376 kb on - strand at 663.376 kb on - strand at 663.376 kb on - strand at 663.478 kb on + strand, within dipZ at 663.478 kb on + strand, within dipZ at 663.479 kb on - strand, within dipZ at 663.479 kb on - strand, within dipZ at 663.519 kb on + strand, within dipZ at 663.585 kb on - strand, within dipZ at 663.618 kb on - strand, within dipZ at 663.634 kb on + strand, within dipZ at 663.635 kb on - strand, within dipZ at 663.781 kb on - strand, within dipZ at 663.829 kb on + strand, within dipZ at 663.829 kb on + strand, within dipZ at 663.830 kb on - strand, within dipZ at 663.830 kb on - strand, within dipZ at 663.830 kb on - strand, within dipZ at 663.830 kb on - strand, within dipZ at 663.841 kb on + strand, within dipZ at 663.841 kb on + strand, within dipZ at 663.934 kb on + strand, within dipZ at 663.979 kb on + strand, within dipZ at 663.980 kb on - strand, within dipZ at 663.980 kb on - strand, within dipZ at 663.982 kb on + strand, within dipZ at 663.982 kb on + strand, within dipZ at 663.983 kb on - strand, within dipZ at 663.983 kb on - strand, within dipZ at 663.983 kb on - strand, within dipZ at 663.983 kb on - strand, within dipZ at 664.035 kb on + strand, within dipZ at 664.103 kb on - strand, within dipZ at 664.103 kb on - strand, within dipZ at 664.103 kb on - strand, within dipZ at 664.192 kb on - strand, within dipZ at 664.192 kb on - strand, within dipZ at 664.205 kb on - strand, within dipZ at 664.229 kb on + strand, within dipZ at 664.276 kb on - strand, within dipZ at 664.276 kb on - strand, within dipZ at 664.321 kb on + strand, within dipZ at 664.330 kb on + strand, within dipZ at 664.341 kb on + strand, within dipZ at 664.341 kb on + strand, within dipZ at 664.357 kb on + strand, within dipZ at 664.415 kb on - strand, within dipZ at 664.415 kb on - strand, within dipZ at 664.415 kb on - strand, within dipZ at 664.419 kb on + strand, within dipZ at 664.419 kb on + strand, within dipZ at 664.420 kb on - strand, within dipZ at 664.430 kb on + strand, within dipZ at 664.431 kb on - strand, within dipZ at 664.706 kb on - strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.750 kb on - strand, within dipZ at 664.750 kb on - strand, within dipZ at 664.750 kb on - strand, within dipZ at 664.756 kb on - strand, within dipZ at 664.756 kb on - strand, within dipZ at 664.756 kb on - strand, within dipZ at 664.869 kb on + strand, within dipZ at 664.869 kb on + strand, within dipZ at 664.870 kb on - strand, within dipZ at 664.872 kb on + strand, within dipZ at 664.872 kb on + strand, within dipZ at 664.873 kb on - strand, within dipZ at 665.028 kb on - strand at 665.041 kb on + strand at 665.041 kb on + strand at 665.042 kb on - strand at 665.042 kb on - strand at 665.077 kb on - strand at 665.077 kb on - strand at 665.077 kb on - strand at 665.077 kb on - strand at 665.134 kb on - strand, within Sama_0539 at 665.151 kb on - strand, within Sama_0539 at 665.189 kb on + strand, within Sama_0539 at 665.189 kb on + strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.216 kb on - strand, within Sama_0539 at 665.216 kb on - strand, within Sama_0539 at 665.216 kb on - strand, within Sama_0539 at 665.220 kb on + strand, within Sama_0539 at 665.222 kb on + strand, within Sama_0539 at 665.223 kb on - strand, within Sama_0539 at 665.258 kb on + strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.374 kb on - strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.415 kb on - strand at 665.426 kb on - strand at 665.426 kb on - strand at 665.426 kb on - strand at 665.426 kb on - strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.435 kb on - strand at 665.435 kb on - strand at 665.435 kb on - strand at 665.435 kb on - strand at 665.439 kb on + strand at 665.439 kb on + strand at 665.439 kb on + strand at 665.440 kb on - strand at 665.445 kb on + strand at 665.468 kb on + strand at 665.468 kb on + strand at 665.468 kb on + strand at 665.469 kb on - strand at 665.469 kb on - strand at 665.469 kb on - strand at 665.493 kb on + strand at 665.493 kb on + strand at 665.494 kb on - strand at 665.494 kb on - strand at 665.509 kb on + strand at 665.548 kb on - strand at 665.579 kb on + strand at 665.579 kb on + strand at 665.596 kb on + strand at 665.597 kb on - strand at 665.731 kb on + strand, within Sama_0540 at 665.731 kb on + strand, within Sama_0540 at 665.731 kb on + strand, within Sama_0540 at 665.731 kb on + strand, within Sama_0540 at 665.732 kb on - strand, within Sama_0540 at 665.734 kb on + strand, within Sama_0540 at 665.734 kb on + strand, within Sama_0540 at 665.734 kb on + strand, within Sama_0540 at 665.735 kb on - strand, within Sama_0540 at 665.735 kb on - strand, within Sama_0540 at 665.813 kb on + strand, within Sama_0540 at 665.814 kb on - strand, within Sama_0540 at 665.828 kb on - strand, within Sama_0540 at 665.869 kb on + strand, within Sama_0540
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 662,336 + Sama_0537 0.51 -1.3 662,337 - Sama_0537 0.51 -2.2 662,363 + Sama_0537 0.53 -0.9 662,377 - Sama_0537 0.54 +0.4 662,424 - Sama_0537 0.57 -1.2 662,656 + Sama_0537 0.71 -1.5 662,656 + Sama_0537 0.71 -1.5 662,656 + Sama_0537 0.71 -2.0 662,657 - Sama_0537 0.71 -0.3 662,674 + Sama_0537 0.72 -0.9 662,674 + Sama_0537 0.72 -0.8 662,675 - Sama_0537 0.72 -1.7 662,694 + Sama_0537 0.73 +0.9 662,707 + Sama_0537 0.74 -1.2 663,016 + -0.9 663,016 + -1.5 663,016 + -0.4 663,017 - -2.3 663,017 - -0.3 663,017 - +0.7 663,017 - -0.8 663,017 - -2.3 663,017 - -2.3 663,017 - +0.4 663,017 - -1.1 663,042 + +0.8 663,042 + -2.8 663,047 + -1.3 663,047 + +0.4 663,047 + -0.9 663,047 + -2.7 663,047 + -0.3 663,047 + +1.1 663,048 - -1.6 663,048 - +0.1 663,048 - -0.2 663,048 - -0.9 663,131 + +0.4 663,131 + -0.3 663,132 - +0.9 663,139 - +0.7 663,147 + -0.5 663,149 + -1.5 663,149 + -0.9 663,150 - +0.1 663,158 + +0.4 663,164 - -0.8 663,174 - -0.5 663,177 + -1.9 663,224 - -1.5 663,227 + -0.8 663,227 + -0.5 663,227 + -0.5 663,227 + -0.4 663,228 - -0.0 663,228 - -2.9 663,229 + +1.2 663,230 - +1.0 663,230 - -1.0 663,230 - -0.9 663,246 + +1.4 663,246 + -0.8 663,247 - +1.4 663,311 + -0.3 663,375 + -0.3 663,375 + -0.1 663,376 - -0.5 663,376 - -1.9 663,376 - -1.2 663,478 + dipZ Sama_0538 0.13 -1.3 663,478 + dipZ Sama_0538 0.13 -1.7 663,479 - dipZ Sama_0538 0.13 -1.2 663,479 - dipZ Sama_0538 0.13 -0.3 663,519 + dipZ Sama_0538 0.15 -1.5 663,585 - dipZ Sama_0538 0.19 -2.0 663,618 - dipZ Sama_0538 0.20 -1.2 663,634 + dipZ Sama_0538 0.21 -1.5 663,635 - dipZ Sama_0538 0.21 -0.7 663,781 - dipZ Sama_0538 0.29 -0.7 663,829 + dipZ Sama_0538 0.32 -0.7 663,829 + dipZ Sama_0538 0.32 -2.2 663,830 - dipZ Sama_0538 0.32 -0.9 663,830 - dipZ Sama_0538 0.32 -0.3 663,830 - dipZ Sama_0538 0.32 -0.3 663,830 - dipZ Sama_0538 0.32 -0.9 663,841 + dipZ Sama_0538 0.33 -0.9 663,841 + dipZ Sama_0538 0.33 -1.2 663,934 + dipZ Sama_0538 0.38 +0.7 663,979 + dipZ Sama_0538 0.40 -0.9 663,980 - dipZ Sama_0538 0.40 -0.7 663,980 - dipZ Sama_0538 0.40 -1.7 663,982 + dipZ Sama_0538 0.40 -2.2 663,982 + dipZ Sama_0538 0.40 -1.2 663,983 - dipZ Sama_0538 0.40 -1.3 663,983 - dipZ Sama_0538 0.40 -0.9 663,983 - dipZ Sama_0538 0.40 -1.3 663,983 - dipZ Sama_0538 0.40 -1.2 664,035 + dipZ Sama_0538 0.43 -0.9 664,103 - dipZ Sama_0538 0.47 -1.9 664,103 - dipZ Sama_0538 0.47 -2.3 664,103 - dipZ Sama_0538 0.47 -1.2 664,192 - dipZ Sama_0538 0.52 +0.1 664,192 - dipZ Sama_0538 0.52 -0.9 664,205 - dipZ Sama_0538 0.53 -1.3 664,229 + dipZ Sama_0538 0.54 -1.3 664,276 - dipZ Sama_0538 0.57 -1.2 664,276 - dipZ Sama_0538 0.57 -0.5 664,321 + dipZ Sama_0538 0.59 -0.5 664,330 + dipZ Sama_0538 0.59 +0.1 664,341 + dipZ Sama_0538 0.60 +0.1 664,341 + dipZ Sama_0538 0.60 -1.3 664,357 + dipZ Sama_0538 0.61 -2.2 664,415 - dipZ Sama_0538 0.64 -1.9 664,415 - dipZ Sama_0538 0.64 +0.7 664,415 - dipZ Sama_0538 0.64 -0.7 664,419 + dipZ Sama_0538 0.64 -0.2 664,419 + dipZ Sama_0538 0.64 -1.5 664,420 - dipZ Sama_0538 0.64 -1.2 664,430 + dipZ Sama_0538 0.65 -1.3 664,431 - dipZ Sama_0538 0.65 +1.7 664,706 - dipZ Sama_0538 0.80 -1.9 664,749 + dipZ Sama_0538 0.82 -0.9 664,749 + dipZ Sama_0538 0.82 -1.4 664,749 + dipZ Sama_0538 0.82 +0.6 664,749 + dipZ Sama_0538 0.82 +0.9 664,750 - dipZ Sama_0538 0.83 -1.2 664,750 - dipZ Sama_0538 0.83 -0.7 664,750 - dipZ Sama_0538 0.83 -2.1 664,756 - dipZ Sama_0538 0.83 -0.2 664,756 - dipZ Sama_0538 0.83 -0.5 664,756 - dipZ Sama_0538 0.83 +0.1 664,869 + dipZ Sama_0538 0.89 +0.6 664,869 + dipZ Sama_0538 0.89 -1.9 664,870 - dipZ Sama_0538 0.89 -1.2 664,872 + dipZ Sama_0538 0.89 +0.1 664,872 + dipZ Sama_0538 0.89 -1.4 664,873 - dipZ Sama_0538 0.89 -1.2 665,028 - +2.6 665,041 + -1.4 665,041 + -1.9 665,042 - -1.5 665,042 - -1.7 665,077 - +0.2 665,077 - +0.6 665,077 - -1.4 665,077 - -0.2 665,134 - Sama_0539 0.21 +0.7 665,151 - Sama_0539 0.26 +1.3 665,189 + Sama_0539 0.37 -1.9 665,189 + Sama_0539 0.37 +0.5 665,190 - Sama_0539 0.38 -0.1 665,190 - Sama_0539 0.38 -0.8 665,190 - Sama_0539 0.38 +0.1 665,190 - Sama_0539 0.38 -0.7 665,216 - Sama_0539 0.45 -0.8 665,216 - Sama_0539 0.45 -1.2 665,216 - Sama_0539 0.45 +0.2 665,220 + Sama_0539 0.47 +0.5 665,222 + Sama_0539 0.47 -1.2 665,223 - Sama_0539 0.47 -1.2 665,258 + Sama_0539 0.58 -0.2 665,259 - Sama_0539 0.58 -1.1 665,259 - Sama_0539 0.58 -0.8 665,259 - Sama_0539 0.58 -0.4 665,259 - Sama_0539 0.58 +0.6 665,374 - -0.9 665,375 + +0.4 665,375 + -0.5 665,375 + -1.2 665,375 + -1.7 665,375 + -0.7 665,375 + -0.7 665,375 + -1.6 665,375 + +1.4 665,375 + -1.8 665,375 + +0.1 665,375 + -0.4 665,375 + +0.1 665,375 + -1.7 665,375 + +0.1 665,375 + -2.1 665,376 - -1.3 665,376 - -1.1 665,376 - +1.4 665,376 - -0.5 665,376 - -0.5 665,376 - -1.2 665,376 - +0.0 665,376 - -0.2 665,376 - -0.5 665,376 - -0.1 665,376 - -1.1 665,376 - +1.2 665,415 - +1.1 665,426 - +0.2 665,426 - +0.8 665,426 - +0.1 665,426 - -2.1 665,434 + -0.6 665,434 + +1.1 665,434 + -1.6 665,434 + -1.0 665,434 + -0.7 665,434 + +0.8 665,434 + -1.0 665,434 + -0.7 665,435 - -0.1 665,435 - +0.4 665,435 - -0.3 665,435 - -0.4 665,439 + -2.5 665,439 + +0.4 665,439 + -1.3 665,440 - +0.8 665,445 + -0.2 665,468 + -2.2 665,468 + -1.2 665,468 + -1.9 665,469 - -2.3 665,469 - +0.8 665,469 - -1.2 665,493 + +0.2 665,493 + +1.2 665,494 - +1.1 665,494 - +0.9 665,509 + +1.9 665,548 - +0.7 665,579 + -0.1 665,579 + +1.3 665,596 + +0.6 665,597 - +0.5 665,731 + Sama_0540 0.20 -0.7 665,731 + Sama_0540 0.20 +0.1 665,731 + Sama_0540 0.20 -0.0 665,731 + Sama_0540 0.20 -1.1 665,732 - Sama_0540 0.21 -1.1 665,734 + Sama_0540 0.21 +0.0 665,734 + Sama_0540 0.21 -0.8 665,734 + Sama_0540 0.21 -2.6 665,735 - Sama_0540 0.21 -0.0 665,735 - Sama_0540 0.21 -2.9 665,813 + Sama_0540 0.34 -0.6 665,814 - Sama_0540 0.35 -0.9 665,828 - Sama_0540 0.37 -0.2 665,869 + Sama_0540 0.44 -0.3
Or see this region's nucleotide sequence