Strain Fitness in Shewanella amazonensis SB2B around Sama_0535

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
658,151	+		Sama_0533	0.89	+1.1
658,151	+		Sama_0533	0.89	+1.0
658,151	+		Sama_0533	0.89	-2.2
658,151	+		Sama_0533	0.89	-0.3
658,151	+		Sama_0533	0.89	-0.1
658,151	+		Sama_0533	0.89	+1.4
658,151	+		Sama_0533	0.89	-1.2
658,151	+		Sama_0533	0.89	+1.2
658,151	+		Sama_0533	0.89	+0.9
658,151	+		Sama_0533	0.89	+0.4
658,151	+		Sama_0533	0.89	-0.3
658,151	+		Sama_0533	0.89	-0.9
658,152	-		Sama_0533	0.89	+0.1
658,152	-		Sama_0533	0.89	+0.5
658,152	-		Sama_0533	0.89	-1.1
658,152	-		Sama_0533	0.89	+1.2
658,152	-		Sama_0533	0.89	-0.5
658,152	-		Sama_0533	0.89	-0.2
658,152	-		Sama_0533	0.89	+0.8
658,152	-		Sama_0533	0.89	+0.2
658,152	-		Sama_0533	0.89	+0.2
658,152	-		Sama_0533	0.89	-2.9
658,153	+		Sama_0533	0.89	+2.3
658,153	+		Sama_0533	0.89	-0.7
658,153	+		Sama_0533	0.89	-1.9
658,153	+		Sama_0533	0.89	-1.0
658,153	+		Sama_0533	0.89	+0.9
658,153	+		Sama_0533	0.89	-0.9
658,154	-		Sama_0533	0.89	+0.2
658,154	-		Sama_0533	0.89	-0.4
658,154	-		Sama_0533	0.89	-0.4
658,154	-		Sama_0533	0.89	-0.8
658,154	-		Sama_0533	0.89	+0.5
658,191	-				-0.5
658,191	-				-2.0
658,253	-				+1.0
658,293	+				-0.2
658,325	+				-0.8
658,326	-				+0.7
658,353	-				-2.0
658,383	+				-0.2
658,384	-				+0.7
658,384	-				-1.3
658,389	+				+0.2
658,412	+				+0.1
658,467	+				+1.7
658,475	+				-0.2
658,480	+				+0.6
658,480	+				+0.0
658,480	+				+0.9
658,480	+				+0.3
658,480	+				+0.3
658,480	+				-0.4
658,480	+				-2.2
658,480	+				-1.5
658,480	+				+1.7
658,481	-				-0.3
658,481	-				-0.8
658,481	-				-1.7
658,481	-				-0.8
658,481	-				-2.2
658,481	-				-0.8
658,481	-				+0.4
658,491	+				-0.3
658,491	+				+1.5
658,491	+				+0.4
658,491	+				+2.1
658,491	+				+0.7
658,492	-				-1.0
658,492	-				-1.3
658,492	-				+0.3
658,492	-				-0.7
658,493	+				+1.2
658,493	+				+0.6
658,493	+				-0.8
658,493	+				-0.7
658,494	-				+1.0
658,494	-				+1.5
658,494	-				-0.2
658,494	-				-0.7
658,494	-				+0.2
658,498	+				-0.3
658,499	-				+0.1
658,506	+				+0.2
658,506	+				+0.7
658,506	+				+0.6
658,506	+				+0.7
658,506	+				+0.9
658,506	+				+1.5
658,506	+				+0.3
658,506	+				+0.3
658,506	+				-0.3
658,506	+				-1.7
658,506	+				+1.4
658,506	+				-0.6
658,506	+				+0.1
658,507	-				-1.3
658,507	-				+1.2
658,507	-				-0.1
658,507	-				+1.7
658,507	-				+0.1
658,507	-				-1.5
658,507	-				-0.8
658,507	-				-0.1
658,507	-				-0.3
658,507	-				+0.4
658,507	-				+0.1
658,508	+				-1.0
658,508	+				+1.1
658,508	+				+0.5
658,508	+				-0.2
658,508	+				-0.7
658,508	+				+0.8
658,508	+				-0.4
658,508	+				+0.9
658,508	+				+0.2
658,508	+				+0.2
658,508	+				-0.3
658,508	+				-1.7
658,508	+				-2.3
658,508	+				+1.4
658,508	+				-0.4
658,508	+				+0.3
658,508	+				+0.1
658,508	+				+0.1
658,508	+				-1.0
658,508	+				-0.7
658,508	+				-0.2
658,508	+				-0.3
658,508	+				-0.4
658,508	+				+0.4
658,508	+				+0.2
658,509	-				+0.0
658,509	-				-0.6
658,509	-				+0.5
658,509	-				+1.8
658,509	-				+0.1
658,509	-				+0.6
658,509	-				-0.3
658,509	-				-0.8
658,509	-				-0.4
658,509	-				-0.4
658,509	-				+0.7
658,509	-				+0.3
658,509	-				+0.1
658,509	-				+0.1
658,509	-				+0.3
658,509	-				+0.5
658,509	-				-1.2
658,512	+				+0.1
658,512	+				+0.5
658,512	+				-0.4
658,512	+				+0.5
658,512	+				+0.7
658,512	+				-0.3
658,512	+				+0.3
658,512	+				+0.8
658,512	+				-1.2
658,512	+				+0.5
658,512	+				+4.0
658,512	+				+0.3
658,512	+				+1.4
658,512	+				-1.4
658,512	+				+0.5
658,512	+				-0.2
658,512	+				-0.3
658,512	+				-0.3
658,512	+				-0.2
658,512	+				+0.2
658,512	+				-0.1
658,512	+				+0.2
658,513	-				+0.5
658,513	-				-1.9
658,513	-				-1.2
658,513	-				-0.3
658,513	-				-0.3
658,513	-				-0.6
658,513	-				+0.5
658,513	-				-0.6
658,513	-				-1.2
658,513	-				+0.6
658,513	-				+1.5
658,513	-				+0.9
658,513	-				+0.7
658,513	-				+1.9
658,513	-				-0.3
658,513	-				-0.9
658,513	-				+0.5
658,514	+				-0.5
658,515	-				+0.7
658,515	-				-0.5
658,515	-				+0.1
658,620	+		Sama_0534	0.26	+0.1
658,620	+		Sama_0534	0.26	+0.8
658,620	+		Sama_0534	0.26	+1.0
658,620	+		Sama_0534	0.26	-1.2
658,621	-		Sama_0534	0.26	+0.2
658,621	-		Sama_0534	0.26	+0.4
658,621	-		Sama_0534	0.26	-0.9
658,626	+		Sama_0534	0.28	+0.6
658,627	-		Sama_0534	0.28	+1.9
658,627	-		Sama_0534	0.28	-0.5
658,627	-		Sama_0534	0.28	+0.2
658,628	+		Sama_0534	0.28	-0.0
658,628	+		Sama_0534	0.28	+0.2
658,628	+		Sama_0534	0.28	+0.1
658,628	+		Sama_0534	0.28	+0.2
658,649	+		Sama_0534	0.33	+0.8
658,656	+		Sama_0534	0.35	-0.8
658,656	+		Sama_0534	0.35	-0.3
658,657	-		Sama_0534	0.35	+0.3
658,657	-		Sama_0534	0.35	-0.2
658,728	+		Sama_0534	0.52	-0.4
658,728	+		Sama_0534	0.52	+0.9
658,728	+		Sama_0534	0.52	-0.9
658,728	+		Sama_0534	0.52	+0.0
658,728	+		Sama_0534	0.52	-2.9
658,728	+		Sama_0534	0.52	+1.4
658,729	-		Sama_0534	0.52	+0.9
658,729	-		Sama_0534	0.52	-0.5
658,763	+		Sama_0534	0.60	+0.1
658,763	+		Sama_0534	0.60	+0.6
658,799	+		Sama_0534	0.69	+1.2
658,799	+		Sama_0534	0.69	-0.7
658,799	+		Sama_0534	0.69	+1.4
658,799	+		Sama_0534	0.69	+0.2
658,855	-		Sama_0534	0.82	-0.7
658,855	-		Sama_0534	0.82	+2.3
658,855	-		Sama_0534	0.82	+0.8
658,855	-		Sama_0534	0.82	+1.5
658,929	+				+1.0
658,929	+				-0.2
658,930	-				-1.2
658,983	+				-2.7
658,983	+				-1.6
658,984	-				-1.5
658,994	+				+0.9
658,995	-				+0.2
658,995	-				-0.1
659,038	+				-1.1
659,039	-				-0.4
659,039	-				+0.7
659,039	-				-0.8
659,039	-				-0.6
659,125	+				-0.6
659,125	+				+0.1
659,125	+				-0.5
659,125	+				-0.3
659,125	+				+1.4
659,125	+				-0.2
659,125	+				-1.4
659,126	-				-0.8
659,126	-				-0.6
659,133	+				-0.7
659,133	+				+2.2
659,134	-				-3.7
659,134	-				+0.5
659,151	-				+0.7
659,223	+		Sama_0535	0.13	+0.1
659,224	-		Sama_0535	0.13	-2.2
659,280	+		Sama_0535	0.18	+0.2
659,281	-		Sama_0535	0.18	-0.0
659,281	-		Sama_0535	0.18	-0.7
659,281	-		Sama_0535	0.18	+1.2
659,288	+		Sama_0535	0.19	-0.2
659,289	-		Sama_0535	0.19	+1.0
659,289	-		Sama_0535	0.19	-1.5
659,305	+		Sama_0535	0.21	-1.5
659,307	+		Sama_0535	0.21	-0.7
659,308	-		Sama_0535	0.21	-1.3
659,314	+		Sama_0535	0.22	+0.1
659,315	-		Sama_0535	0.22	-0.7
659,315	-		Sama_0535	0.22	-0.8
659,315	-		Sama_0535	0.22	+0.8
659,342	+		Sama_0535	0.24	+0.1
659,343	-		Sama_0535	0.24	-0.3
659,377	+		Sama_0535	0.28	-0.9
659,378	-		Sama_0535	0.28	+1.2
659,384	-		Sama_0535	0.28	+1.0
659,386	+		Sama_0535	0.29	+0.2
659,387	-		Sama_0535	0.29	+0.5
659,432	+		Sama_0535	0.33	-0.8
659,433	-		Sama_0535	0.33	-2.1
659,516	-		Sama_0535	0.41	+1.3
659,589	+		Sama_0535	0.48	-0.6
659,589	+		Sama_0535	0.48	+2.7
659,590	-		Sama_0535	0.48	-1.6
659,590	-		Sama_0535	0.48	+0.8
659,590	-		Sama_0535	0.48	+0.2
659,590	-		Sama_0535	0.48	-2.5
659,590	-		Sama_0535	0.48	-0.0
659,603	-		Sama_0535	0.50	+0.8
659,649	+		Sama_0535	0.54	-0.2
659,649	+		Sama_0535	0.54	+1.5
659,650	-		Sama_0535	0.54	-0.1
659,650	-		Sama_0535	0.54	+1.2
659,650	-		Sama_0535	0.54	-1.0
659,650	-		Sama_0535	0.54	-0.3
659,650	-		Sama_0535	0.54	-0.3
659,650	-		Sama_0535	0.54	+0.5
659,656	+		Sama_0535	0.55	-0.2
659,657	-		Sama_0535	0.55	-0.3
659,728	+		Sama_0535	0.62	+0.4
659,827	+		Sama_0535	0.72	-0.6
659,853	+		Sama_0535	0.74	+0.8
659,853	+		Sama_0535	0.74	-0.2
659,853	+		Sama_0535	0.74	-1.5
659,853	+		Sama_0535	0.74	+1.0
659,854	-		Sama_0535	0.74	+0.4
659,886	+		Sama_0535	0.77	+0.3
659,887	-		Sama_0535	0.77	-0.2
659,928	+		Sama_0535	0.81	+0.4
659,928	+		Sama_0535	0.81	+1.7
659,929	-		Sama_0535	0.81	+0.1
659,929	-		Sama_0535	0.81	-1.0
659,954	+		Sama_0535	0.84	+0.8
659,993	+		Sama_0535	0.88	-0.7
659,994	-		Sama_0535	0.88	-0.0
660,004	+		Sama_0535	0.89	-0.9
660,004	+		Sama_0535	0.89	+0.7
660,005	-		Sama_0535	0.89	+1.4
660,005	-		Sama_0535	0.89	+0.3
660,024	-				+0.1
660,024	-				-0.6
660,122	+				-0.7
660,122	+				-0.3
660,123	-				-1.1
660,123	-				-0.4
660,133	-				+0.7
660,135	-				-0.2
660,138	+				-1.2
660,139	-				-0.4
660,155	+				-0.3
660,156	-				+1.7
660,156	-				-0.2
660,157	+				-1.0
660,157	+				-0.4
660,158	-				+1.3
660,158	-				-0.2
660,158	-				-0.2
660,225	+				-0.7
660,226	-				+1.8
660,257	+				+2.0
660,257	+				+0.9
660,257	+				+1.7
660,257	+				+1.1
660,257	+				+1.4
660,258	-				-0.5
660,258	-				+1.2
660,258	-				+2.7
660,258	-				+0.8
660,258	-				+0.5
660,258	-				+0.6
660,258	-				-0.3
660,258	-				+1.5
660,258	-				+1.7
660,258	-				+1.5
660,291	-				-0.9
660,291	-				+0.5
660,369	+		Sama_0536	0.13	+1.1
660,369	+		Sama_0536	0.13	+1.6
660,438	+		Sama_0536	0.19	+0.9
660,438	+		Sama_0536	0.19	+0.7
660,438	+		Sama_0536	0.19	-0.1
660,438	+		Sama_0536	0.19	+0.5
660,438	+		Sama_0536	0.19	+0.3
660,439	-		Sama_0536	0.20	+0.9
660,439	-		Sama_0536	0.20	+1.1
660,553	+		Sama_0536	0.30	-0.1
660,554	-		Sama_0536	0.30	-0.3
660,554	-		Sama_0536	0.30	+0.9
660,573	+		Sama_0536	0.31	+1.1
660,573	+		Sama_0536	0.31	-0.5
660,574	-		Sama_0536	0.31	+0.5
660,575	+		Sama_0536	0.31	+1.5
660,575	+		Sama_0536	0.31	+0.8
660,575	+		Sama_0536	0.31	-0.3
660,575	+		Sama_0536	0.31	+0.9
660,576	-		Sama_0536	0.32	-1.9
660,576	-		Sama_0536	0.32	+1.3
660,690	+		Sama_0536	0.41	-1.3
660,690	+		Sama_0536	0.41	+0.5
660,692	+		Sama_0536	0.42	-0.0
660,692	+		Sama_0536	0.42	-0.2
660,692	+		Sama_0536	0.42	+1.7
660,692	+		Sama_0536	0.42	+0.6
660,692	+		Sama_0536	0.42	-1.3
660,692	+		Sama_0536	0.42	-1.0
660,692	+		Sama_0536	0.42	-1.3
660,693	-		Sama_0536	0.42	+0.6
660,693	-		Sama_0536	0.42	+0.1
660,706	+		Sama_0536	0.43	+1.2
660,707	-		Sama_0536	0.43	+0.9
660,707	-		Sama_0536	0.43	+0.4
660,738	+		Sama_0536	0.46	+0.1
660,738	+		Sama_0536	0.46	+0.7
660,738	+		Sama_0536	0.46	+0.3
660,739	-		Sama_0536	0.46	-0.8
660,739	-		Sama_0536	0.46	+1.1
660,739	-		Sama_0536	0.46	+2.3
660,745	+		Sama_0536	0.46	+1.7
660,745	+		Sama_0536	0.46	+0.4
660,745	+		Sama_0536	0.46	+1.5
660,745	+		Sama_0536	0.46	+0.6
660,745	+		Sama_0536	0.46	+1.1
660,746	-		Sama_0536	0.46	-1.2
660,746	-		Sama_0536	0.46	+1.7
660,746	-		Sama_0536	0.46	+0.2
660,759	+		Sama_0536	0.47	-0.7
660,759	+		Sama_0536	0.47	+1.7
660,759	+		Sama_0536	0.47	+0.9
660,772	+		Sama_0536	0.49	+1.7
660,772	+		Sama_0536	0.49	+0.8
660,772	+		Sama_0536	0.49	+1.3
660,772	+		Sama_0536	0.49	+0.3
660,772	+		Sama_0536	0.49	+1.0
660,772	+		Sama_0536	0.49	-0.0
660,772	+		Sama_0536	0.49	+0.2
660,772	+		Sama_0536	0.49	+0.7
660,773	-		Sama_0536	0.49	+1.3
660,773	-		Sama_0536	0.49	+0.7
660,773	-		Sama_0536	0.49	+2.0
660,773	-		Sama_0536	0.49	-1.3
660,773	-		Sama_0536	0.49	-0.7
660,773	-		Sama_0536	0.49	+1.9
660,773	-		Sama_0536	0.49	+0.3
660,773	-		Sama_0536	0.49	-0.3
660,773	-		Sama_0536	0.49	+2.1
660,773	-		Sama_0536	0.49	+0.5
660,834	+		Sama_0536	0.54	+0.9
660,834	+		Sama_0536	0.54	+1.7
660,834	+		Sama_0536	0.54	+0.4
660,834	+		Sama_0536	0.54	+1.2
660,834	+		Sama_0536	0.54	+0.2
660,835	-		Sama_0536	0.54	+1.0
660,835	-		Sama_0536	0.54	+0.7
660,835	-		Sama_0536	0.54	+1.4
660,835	-		Sama_0536	0.54	-0.0
660,855	+		Sama_0536	0.56	+2.2
660,856	-		Sama_0536	0.56	+1.5
660,856	-		Sama_0536	0.56	-0.9
660,856	-		Sama_0536	0.56	+1.7
661,072	-		Sama_0536	0.75	-0.6
661,072	-		Sama_0536	0.75	+1.9
661,076	+		Sama_0536	0.75	+2.1
661,077	-		Sama_0536	0.75	+1.3
661,077	-		Sama_0536	0.75	+1.2
661,077	-		Sama_0536	0.75	+1.6
661,077	-		Sama_0536	0.75	-0.9
661,077	-		Sama_0536	0.75	+1.8
661,081	-		Sama_0536	0.75	+1.1
661,081	-		Sama_0536	0.75	-1.8
661,081	-		Sama_0536	0.75	+0.2