Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0467 and Sama_0468 are separated by 45 nucleotides Sama_0468 and Sama_0469 overlap by 4 nucleotides Sama_0469 and Sama_0470 are separated by 5 nucleotides
Sama_0467: Sama_0467 - rod shape-determining protein MreB (RefSeq), at 573,182 to 574,231
_0467
Sama_0468: Sama_0468 - rod shape-determining protein MreC (RefSeq), at 574,277 to 575,206
_0468
Sama_0469: Sama_0469 - rod shape-determining protein MreD (RefSeq), at 575,203 to 575,691
_0469
Sama_0470: Sama_0470 - maf protein (RefSeq), at 575,697 to 576,281
_0470
Position (kb) 574
575
576 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 574.276 kb on + strand at 574.276 kb on + strand at 574.276 kb on + strand at 575.679 kb on + strand at 575.679 kb on + strand at 575.689 kb on + strand at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.957 kb on + strand, within Sama_0470 at 575.958 kb on - strand, within Sama_0470 at 576.056 kb on + strand, within Sama_0470 at 576.057 kb on - strand, within Sama_0470 at 576.057 kb on - strand, within Sama_0470 at 576.113 kb on + strand, within Sama_0470 at 576.123 kb on + strand, within Sama_0470 at 576.123 kb on + strand, within Sama_0470 at 576.124 kb on - strand, within Sama_0470 at 576.124 kb on - strand, within Sama_0470 at 576.149 kb on + strand, within Sama_0470 at 576.149 kb on + strand, within Sama_0470 at 576.150 kb on - strand, within Sama_0470 at 576.162 kb on + strand, within Sama_0470 at 576.162 kb on + strand, within Sama_0470 at 576.163 kb on - strand, within Sama_0470 at 576.167 kb on + strand, within Sama_0470 at 576.167 kb on + strand, within Sama_0470 at 576.168 kb on - strand, within Sama_0470
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 574,276 + -2.3 574,276 + -1.9 574,276 + -1.1 575,679 + -1.5 575,679 + -1.8 575,689 + +1.4 575,838 + Sama_0470 0.24 -0.6 575,838 + Sama_0470 0.24 +0.8 575,838 + Sama_0470 0.24 -0.4 575,838 + Sama_0470 0.24 -0.9 575,838 + Sama_0470 0.24 -0.4 575,838 + Sama_0470 0.24 -0.3 575,838 + Sama_0470 0.24 +1.3 575,838 + Sama_0470 0.24 +0.8 575,839 - Sama_0470 0.24 -2.2 575,839 - Sama_0470 0.24 -0.2 575,839 - Sama_0470 0.24 -1.1 575,839 - Sama_0470 0.24 -0.9 575,839 - Sama_0470 0.24 +0.7 575,839 - Sama_0470 0.24 +1.0 575,839 - Sama_0470 0.24 -2.1 575,894 + Sama_0470 0.34 -1.4 575,894 + Sama_0470 0.34 -0.4 575,894 + Sama_0470 0.34 +0.5 575,894 + Sama_0470 0.34 -1.9 575,894 + Sama_0470 0.34 -1.6 575,894 + Sama_0470 0.34 +1.2 575,894 + Sama_0470 0.34 -0.5 575,895 - Sama_0470 0.34 -2.3 575,895 - Sama_0470 0.34 -1.1 575,895 - Sama_0470 0.34 +0.1 575,895 - Sama_0470 0.34 -1.7 575,895 - Sama_0470 0.34 +0.7 575,895 - Sama_0470 0.34 -0.6 575,929 + Sama_0470 0.40 -0.3 575,929 + Sama_0470 0.40 -0.6 575,929 + Sama_0470 0.40 -0.1 575,929 + Sama_0470 0.40 -2.0 575,929 + Sama_0470 0.40 +1.5 575,929 + Sama_0470 0.40 -1.4 575,929 + Sama_0470 0.40 +0.1 575,930 - Sama_0470 0.40 -0.9 575,930 - Sama_0470 0.40 -2.2 575,930 - Sama_0470 0.40 -1.0 575,930 - Sama_0470 0.40 +0.1 575,957 + Sama_0470 0.44 +0.7 575,958 - Sama_0470 0.45 +0.4 576,056 + Sama_0470 0.61 -1.3 576,057 - Sama_0470 0.62 -3.3 576,057 - Sama_0470 0.62 -3.0 576,113 + Sama_0470 0.71 -1.1 576,123 + Sama_0470 0.73 -1.1 576,123 + Sama_0470 0.73 -0.0 576,124 - Sama_0470 0.73 -1.3 576,124 - Sama_0470 0.73 -3.4 576,149 + Sama_0470 0.77 -0.7 576,149 + Sama_0470 0.77 -0.2 576,150 - Sama_0470 0.77 -1.8 576,162 + Sama_0470 0.79 -0.6 576,162 + Sama_0470 0.79 -1.0 576,163 - Sama_0470 0.80 -1.4 576,167 + Sama_0470 0.80 -0.5 576,167 + Sama_0470 0.80 +0.4 576,168 - Sama_0470 0.81 -0.5
Or see this region's nucleotide sequence