Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0388 and Sama_0389 are separated by 72 nucleotides Sama_0389 and Sama_0390 are separated by 68 nucleotides Sama_0390 and Sama_0391 are separated by 656 nucleotides
Sama_0388: Sama_0388 - putative diguanylate phosphodiesterase (RefSeq), at 480,564 to 483,077
_0388
Sama_0389: Sama_0389 - short chain dehydrogenase (RefSeq), at 483,150 to 483,962
_0389
Sama_0390: Sama_0390 - hypothetical protein (RefSeq), at 484,031 to 484,270
_0390
Sama_0391: Sama_0391 - hypothetical protein (RefSeq), at 484,927 to 485,916
_0391
Position (kb) 483
484 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 482.156 kb on + strand, within Sama_0388 at 482.165 kb on - strand, within Sama_0388 at 482.219 kb on + strand, within Sama_0388 at 482.269 kb on - strand, within Sama_0388 at 482.269 kb on - strand, within Sama_0388 at 482.269 kb on - strand, within Sama_0388 at 482.295 kb on + strand, within Sama_0388 at 482.303 kb on + strand, within Sama_0388 at 482.303 kb on + strand, within Sama_0388 at 482.303 kb on + strand, within Sama_0388 at 482.304 kb on - strand, within Sama_0388 at 482.304 kb on - strand, within Sama_0388 at 482.327 kb on + strand, within Sama_0388 at 482.328 kb on - strand, within Sama_0388 at 482.328 kb on - strand, within Sama_0388 at 482.364 kb on + strand, within Sama_0388 at 482.365 kb on - strand, within Sama_0388 at 482.377 kb on + strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.378 kb on - strand, within Sama_0388 at 482.471 kb on + strand, within Sama_0388 at 482.472 kb on - strand, within Sama_0388 at 482.472 kb on - strand, within Sama_0388 at 482.492 kb on + strand, within Sama_0388 at 482.493 kb on - strand, within Sama_0388 at 482.493 kb on - strand, within Sama_0388 at 482.493 kb on - strand, within Sama_0388 at 482.604 kb on - strand, within Sama_0388 at 482.604 kb on - strand, within Sama_0388 at 482.604 kb on - strand, within Sama_0388 at 482.633 kb on + strand, within Sama_0388 at 482.634 kb on - strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.675 kb on + strand, within Sama_0388 at 482.676 kb on - strand, within Sama_0388 at 482.676 kb on - strand, within Sama_0388 at 482.772 kb on - strand, within Sama_0388 at 482.802 kb on + strand, within Sama_0388 at 482.802 kb on + strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on + strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.803 kb on - strand, within Sama_0388 at 482.808 kb on + strand, within Sama_0388 at 482.832 kb on + strand at 482.832 kb on + strand at 482.833 kb on - strand at 482.886 kb on + strand at 482.887 kb on - strand at 482.903 kb on + strand at 482.904 kb on - strand at 482.904 kb on - strand at 482.932 kb on + strand at 482.932 kb on + strand at 482.932 kb on + strand at 483.000 kb on + strand at 483.001 kb on - strand at 483.012 kb on + strand at 483.108 kb on + strand at 483.149 kb on + strand at 483.149 kb on + strand at 483.150 kb on - strand at 483.200 kb on + strand at 483.201 kb on - strand at 483.350 kb on + strand, within Sama_0389 at 483.350 kb on + strand, within Sama_0389 at 483.351 kb on - strand, within Sama_0389 at 483.390 kb on - strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.413 kb on + strand, within Sama_0389 at 483.414 kb on - strand, within Sama_0389 at 483.434 kb on + strand, within Sama_0389 at 483.435 kb on - strand, within Sama_0389 at 483.500 kb on + strand, within Sama_0389 at 483.500 kb on + strand, within Sama_0389 at 483.501 kb on - strand, within Sama_0389 at 483.501 kb on - strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.504 kb on + strand, within Sama_0389 at 483.569 kb on - strand, within Sama_0389 at 483.621 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.799 kb on + strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.800 kb on - strand, within Sama_0389 at 483.859 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.863 kb on + strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.864 kb on - strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.866 kb on + strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.867 kb on - strand, within Sama_0389 at 483.922 kb on + strand at 483.922 kb on + strand at 483.922 kb on + strand at 483.923 kb on - strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.926 kb on + strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.927 kb on - strand at 483.979 kb on - strand at 483.979 kb on - strand at 484.221 kb on + strand, within Sama_0390 at 484.235 kb on + strand, within Sama_0390 at 484.236 kb on - strand, within Sama_0390 at 484.237 kb on + strand, within Sama_0390 at 484.238 kb on - strand, within Sama_0390 at 484.238 kb on - strand, within Sama_0390 at 484.277 kb on + strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.278 kb on - strand at 484.281 kb on + strand at 484.281 kb on + strand at 484.281 kb on + strand at 484.282 kb on - strand at 484.282 kb on - strand at 484.302 kb on - strand at 484.302 kb on - strand at 484.302 kb on - strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.313 kb on + strand at 484.314 kb on - strand at 484.314 kb on - strand at 484.314 kb on - strand at 484.322 kb on + strand at 484.322 kb on + strand at 484.323 kb on - strand at 484.323 kb on - strand at 484.395 kb on - strand at 484.406 kb on + strand at 484.416 kb on + strand at 484.417 kb on - strand at 484.438 kb on - strand at 484.438 kb on - strand at 484.476 kb on - strand at 484.544 kb on - strand at 484.625 kb on - strand at 484.631 kb on + strand at 484.632 kb on - strand at 484.642 kb on - strand at 484.669 kb on - strand at 484.669 kb on - strand at 484.719 kb on + strand at 484.725 kb on + strand at 484.734 kb on + strand at 484.735 kb on - strand at 484.778 kb on - strand at 484.779 kb on + strand at 484.780 kb on - strand at 484.785 kb on + strand at 484.790 kb on + strand at 484.790 kb on + strand at 484.790 kb on + strand at 484.792 kb on + strand at 484.792 kb on + strand at 484.792 kb on + strand at 484.793 kb on - strand at 484.793 kb on - strand at 484.802 kb on + strand at 484.808 kb on + strand at 484.959 kb on + strand at 484.960 kb on - strand at 484.962 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 482,156 + Sama_0388 0.63 +0.2 482,165 - Sama_0388 0.64 +0.1 482,219 + Sama_0388 0.66 -1.1 482,269 - Sama_0388 0.68 -0.7 482,269 - Sama_0388 0.68 -1.5 482,269 - Sama_0388 0.68 +1.7 482,295 + Sama_0388 0.69 +0.7 482,303 + Sama_0388 0.69 -1.3 482,303 + Sama_0388 0.69 -0.1 482,303 + Sama_0388 0.69 -1.6 482,304 - Sama_0388 0.69 +0.7 482,304 - Sama_0388 0.69 -1.3 482,327 + Sama_0388 0.70 +0.1 482,328 - Sama_0388 0.70 -1.7 482,328 - Sama_0388 0.70 -0.7 482,364 + Sama_0388 0.72 -1.6 482,365 - Sama_0388 0.72 -0.2 482,377 + Sama_0388 0.72 -0.3 482,378 - Sama_0388 0.72 -2.1 482,378 - Sama_0388 0.72 +0.1 482,378 - Sama_0388 0.72 -1.6 482,378 - Sama_0388 0.72 +2.7 482,471 + Sama_0388 0.76 +1.7 482,472 - Sama_0388 0.76 +0.9 482,472 - Sama_0388 0.76 -1.5 482,492 + Sama_0388 0.77 +0.4 482,493 - Sama_0388 0.77 -2.9 482,493 - Sama_0388 0.77 +0.7 482,493 - Sama_0388 0.77 +0.4 482,604 - Sama_0388 0.81 -0.7 482,604 - Sama_0388 0.81 -1.5 482,604 - Sama_0388 0.81 -0.8 482,633 + Sama_0388 0.82 -1.3 482,634 - Sama_0388 0.82 -0.2 482,675 + Sama_0388 0.84 +0.5 482,675 + Sama_0388 0.84 +0.4 482,675 + Sama_0388 0.84 +0.3 482,675 + Sama_0388 0.84 +0.3 482,675 + Sama_0388 0.84 +0.4 482,676 - Sama_0388 0.84 -1.2 482,676 - Sama_0388 0.84 -0.3 482,772 - Sama_0388 0.88 -1.3 482,802 + Sama_0388 0.89 +2.2 482,802 + Sama_0388 0.89 -0.9 482,803 - Sama_0388 0.89 +0.6 482,803 - Sama_0388 0.89 -0.2 482,803 - Sama_0388 0.89 -1.6 482,803 - Sama_0388 0.89 +0.9 482,803 + Sama_0388 0.89 +0.3 482,803 - Sama_0388 0.89 +0.5 482,803 - Sama_0388 0.89 -1.6 482,808 + Sama_0388 0.89 -2.3 482,832 + +1.0 482,832 + -0.4 482,833 - -0.3 482,886 + +0.0 482,887 - +0.3 482,903 + -0.1 482,904 - -0.1 482,904 - +0.4 482,932 + +0.6 482,932 + -1.0 482,932 + -0.7 483,000 + -0.1 483,001 - -1.4 483,012 + +0.9 483,108 + -0.9 483,149 + -1.1 483,149 + +0.9 483,150 - +0.3 483,200 + -1.4 483,201 - +0.9 483,350 + Sama_0389 0.25 -1.4 483,350 + Sama_0389 0.25 +0.5 483,351 - Sama_0389 0.25 +0.6 483,390 - Sama_0389 0.30 +0.7 483,413 + Sama_0389 0.32 +0.1 483,413 + Sama_0389 0.32 +0.7 483,413 + Sama_0389 0.32 -0.5 483,413 + Sama_0389 0.32 +0.7 483,413 + Sama_0389 0.32 +0.2 483,414 - Sama_0389 0.32 -0.1 483,434 + Sama_0389 0.35 +1.1 483,435 - Sama_0389 0.35 +0.4 483,500 + Sama_0389 0.43 -3.0 483,500 + Sama_0389 0.43 -0.2 483,501 - Sama_0389 0.43 -0.4 483,501 - Sama_0389 0.43 -0.5 483,504 + Sama_0389 0.44 +0.6 483,504 + Sama_0389 0.44 +0.6 483,504 + Sama_0389 0.44 +1.3 483,569 - Sama_0389 0.52 -0.4 483,621 + Sama_0389 0.58 -0.0 483,799 + Sama_0389 0.80 -1.0 483,799 + Sama_0389 0.80 -1.3 483,799 + Sama_0389 0.80 -0.1 483,800 - Sama_0389 0.80 -0.3 483,800 - Sama_0389 0.80 -0.2 483,800 - Sama_0389 0.80 -1.4 483,800 - Sama_0389 0.80 +0.9 483,800 - Sama_0389 0.80 +1.5 483,800 - Sama_0389 0.80 -0.3 483,859 + Sama_0389 0.87 +0.7 483,863 + Sama_0389 0.88 -1.2 483,863 + Sama_0389 0.88 +0.8 483,863 + Sama_0389 0.88 +1.7 483,863 + Sama_0389 0.88 +0.2 483,863 + Sama_0389 0.88 +0.7 483,863 + Sama_0389 0.88 +0.3 483,863 + Sama_0389 0.88 +0.2 483,863 + Sama_0389 0.88 +1.0 483,863 + Sama_0389 0.88 +0.1 483,863 + Sama_0389 0.88 +0.4 483,863 + Sama_0389 0.88 +0.2 483,863 + Sama_0389 0.88 -0.9 483,864 - Sama_0389 0.88 +0.6 483,864 - Sama_0389 0.88 -1.4 483,864 - Sama_0389 0.88 -1.4 483,864 - Sama_0389 0.88 -0.2 483,864 - Sama_0389 0.88 -0.7 483,864 - Sama_0389 0.88 -0.6 483,864 - Sama_0389 0.88 +1.4 483,864 - Sama_0389 0.88 -0.2 483,864 - Sama_0389 0.88 -1.1 483,864 - Sama_0389 0.88 -0.7 483,864 - Sama_0389 0.88 -0.2 483,864 - Sama_0389 0.88 -0.6 483,864 - Sama_0389 0.88 -1.4 483,864 - Sama_0389 0.88 +0.4 483,864 - Sama_0389 0.88 -0.2 483,864 - Sama_0389 0.88 +0.3 483,866 + Sama_0389 0.88 +1.6 483,866 + Sama_0389 0.88 +0.4 483,866 + Sama_0389 0.88 +1.4 483,866 + Sama_0389 0.88 -0.7 483,867 - Sama_0389 0.88 -1.5 483,867 - Sama_0389 0.88 +0.3 483,867 - Sama_0389 0.88 -0.3 483,867 - Sama_0389 0.88 +0.2 483,867 - Sama_0389 0.88 +0.5 483,867 - Sama_0389 0.88 +1.6 483,867 - Sama_0389 0.88 -0.3 483,867 - Sama_0389 0.88 -0.6 483,867 - Sama_0389 0.88 +0.9 483,922 + +0.1 483,922 + -0.9 483,922 + +0.6 483,923 - +1.4 483,926 + +0.7 483,926 + +0.0 483,926 + -1.4 483,926 + -0.6 483,926 + -0.3 483,926 + -0.3 483,927 - +0.8 483,927 - -0.9 483,927 - +0.3 483,927 - +0.7 483,927 - -1.6 483,927 - +0.4 483,927 - -0.9 483,927 - -0.6 483,927 - -0.9 483,927 - +0.6 483,927 - -0.7 483,979 - +1.4 483,979 - +0.8 484,221 + Sama_0390 0.79 -1.3 484,235 + Sama_0390 0.85 +0.3 484,236 - Sama_0390 0.85 +0.7 484,237 + Sama_0390 0.86 +1.1 484,238 - Sama_0390 0.86 -0.0 484,238 - Sama_0390 0.86 +0.3 484,277 + -1.4 484,278 - -0.3 484,278 - +1.2 484,278 - -0.0 484,278 - +1.8 484,281 + -0.6 484,281 + -1.6 484,281 + -0.8 484,282 - +0.1 484,282 - +0.3 484,302 - -0.6 484,302 - -1.1 484,302 - -0.9 484,313 + -0.4 484,313 + +1.1 484,313 + -0.7 484,313 + -0.6 484,314 - -0.9 484,314 - -0.2 484,314 - +1.1 484,322 + +0.0 484,322 + +1.3 484,323 - -1.0 484,323 - +0.0 484,395 - -0.2 484,406 + +0.6 484,416 + +1.3 484,417 - -0.3 484,438 - +0.5 484,438 - +0.1 484,476 - +0.1 484,544 - -1.4 484,625 - -0.6 484,631 + -0.9 484,632 - +0.7 484,642 - -0.3 484,669 - -1.7 484,669 - +0.5 484,719 + -1.6 484,725 + -0.2 484,734 + +0.6 484,735 - -0.5 484,778 - -1.6 484,779 + -1.1 484,780 - +0.5 484,785 + -1.2 484,790 + +1.2 484,790 + -2.8 484,790 + -1.8 484,792 + -1.0 484,792 + -1.8 484,792 + -4.2 484,793 - -0.0 484,793 - +0.1 484,802 + +0.9 484,808 + -0.1 484,959 + -1.3 484,960 - +0.5 484,962 + -0.4
Or see this region's nucleotide sequence