Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0326 and radC are separated by 83 nucleotides radC and rpmB are separated by 119 nucleotides rpmB and rpmG are separated by 6 nucleotides rpmG and Sama_0330 are separated by 280 nucleotides
Sama_0326: Sama_0326 - phosphopantothenoylcysteine decarboxylase., phosphopantothenate--cysteine ligase (RefSeq), at 393,131 to 394,384
_0326
Sama_0327: radC - DNA repair protein RadC (RefSeq), at 394,468 to 395,145
radC
Sama_0328: rpmB - 50S ribosomal protein L28 (RefSeq), at 395,265 to 395,501
rpmB
Sama_0329: rpmG - 50S ribosomal protein L33 (RefSeq), at 395,508 to 395,681
rpmG
Sama_0330: Sama_0330 - N-acetylglutamate synthase (RefSeq), at 395,962 to 397,284
_0330
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 394.364 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.380 kb on - strand at 394.384 kb on + strand at 394.384 kb on + strand at 394.384 kb on + strand at 394.384 kb on + strand at 394.385 kb on - strand at 394.442 kb on + strand at 394.442 kb on + strand at 394.443 kb on - strand at 394.514 kb on + strand at 394.514 kb on + strand at 394.538 kb on + strand, within radC at 394.538 kb on + strand, within radC at 394.538 kb on + strand, within radC at 394.539 kb on - strand, within radC at 394.553 kb on + strand, within radC at 394.554 kb on - strand, within radC at 394.618 kb on - strand, within radC at 394.637 kb on + strand, within radC at 394.637 kb on + strand, within radC at 394.638 kb on - strand, within radC at 394.646 kb on + strand, within radC at 394.646 kb on + strand, within radC at 394.647 kb on - strand, within radC at 394.647 kb on - strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.659 kb on + strand, within radC at 394.660 kb on - strand, within radC at 394.660 kb on - strand, within radC at 394.660 kb on - strand, within radC at 394.697 kb on + strand, within radC at 394.703 kb on - strand, within radC at 394.703 kb on - strand, within radC at 394.801 kb on + strand, within radC at 394.801 kb on + strand, within radC at 394.802 kb on - strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.831 kb on + strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.832 kb on - strand, within radC at 394.838 kb on + strand, within radC at 394.838 kb on + strand, within radC at 394.838 kb on + strand, within radC at 394.838 kb on + strand, within radC at 394.839 kb on - strand, within radC at 394.839 kb on - strand, within radC at 394.839 kb on - strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.907 kb on + strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.908 kb on - strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.922 kb on + strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.923 kb on - strand, within radC at 394.925 kb on - strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.066 kb on + strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.067 kb on - strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.072 kb on + strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.073 kb on - strand, within radC at 395.096 kb on + strand at 395.097 kb on - strand at 395.097 kb on - strand at 395.097 kb on - strand at 395.111 kb on + strand at 395.112 kb on - strand at 395.150 kb on + strand at 395.151 kb on - strand at 395.731 kb on + strand at 395.764 kb on + strand at 395.764 kb on + strand at 395.764 kb on + strand at 395.764 kb on + strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.765 kb on - strand at 395.771 kb on + strand at 395.771 kb on + strand at 395.772 kb on - strand at 395.772 kb on - strand at 395.772 kb on - strand at 395.779 kb on + strand at 395.779 kb on + strand at 395.779 kb on + strand at 395.780 kb on - strand at 395.780 kb on - strand at 395.780 kb on - strand at 395.780 kb on - strand at 395.791 kb on - strand at 395.863 kb on + strand at 395.970 kb on + strand at 396.007 kb on + strand at 396.007 kb on + strand at 396.007 kb on + strand at 396.007 kb on + strand at 396.008 kb on - strand at 396.008 kb on - strand at 396.008 kb on - strand at 396.008 kb on - strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.011 kb on + strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.012 kb on - strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.065 kb on + strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.066 kb on - strand at 396.127 kb on - strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.139 kb on + strand, within Sama_0330 at 396.140 kb on - strand, within Sama_0330 at 396.140 kb on - strand, within Sama_0330
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 394,364 - -0.3 394,380 - +0.0 394,380 - +0.2 394,380 - -1.0 394,380 - -0.1 394,380 - +0.4 394,380 - +0.9 394,384 + -0.0 394,384 + -0.2 394,384 + +1.8 394,384 + -0.3 394,385 - +0.7 394,442 + +0.5 394,442 + -0.2 394,443 - +0.4 394,514 + +1.5 394,514 + -0.4 394,538 + radC Sama_0327 0.10 +0.1 394,538 + radC Sama_0327 0.10 +0.4 394,538 + radC Sama_0327 0.10 +0.2 394,539 - radC Sama_0327 0.10 +0.4 394,553 + radC Sama_0327 0.13 -0.5 394,554 - radC Sama_0327 0.13 -0.1 394,618 - radC Sama_0327 0.22 -0.9 394,637 + radC Sama_0327 0.25 +0.4 394,637 + radC Sama_0327 0.25 +0.6 394,638 - radC Sama_0327 0.25 -1.0 394,646 + radC Sama_0327 0.26 -1.7 394,646 + radC Sama_0327 0.26 +0.2 394,647 - radC Sama_0327 0.26 -0.9 394,647 - radC Sama_0327 0.26 +0.5 394,659 + radC Sama_0327 0.28 +0.6 394,659 + radC Sama_0327 0.28 +0.2 394,659 + radC Sama_0327 0.28 +1.5 394,659 + radC Sama_0327 0.28 +1.6 394,659 + radC Sama_0327 0.28 -2.0 394,659 + radC Sama_0327 0.28 -1.0 394,659 + radC Sama_0327 0.28 -0.1 394,659 + radC Sama_0327 0.28 +0.0 394,660 - radC Sama_0327 0.28 -0.7 394,660 - radC Sama_0327 0.28 -1.5 394,660 - radC Sama_0327 0.28 +2.4 394,697 + radC Sama_0327 0.34 -0.5 394,703 - radC Sama_0327 0.35 +0.5 394,703 - radC Sama_0327 0.35 +0.2 394,801 + radC Sama_0327 0.49 +1.1 394,801 + radC Sama_0327 0.49 +0.4 394,802 - radC Sama_0327 0.49 +0.7 394,831 + radC Sama_0327 0.54 +2.0 394,831 + radC Sama_0327 0.54 +2.9 394,831 + radC Sama_0327 0.54 +1.4 394,831 + radC Sama_0327 0.54 +1.5 394,831 + radC Sama_0327 0.54 +1.0 394,832 - radC Sama_0327 0.54 +1.0 394,832 - radC Sama_0327 0.54 +1.8 394,832 - radC Sama_0327 0.54 +1.4 394,832 - radC Sama_0327 0.54 +0.3 394,832 - radC Sama_0327 0.54 +1.4 394,832 - radC Sama_0327 0.54 +2.0 394,832 - radC Sama_0327 0.54 +2.8 394,832 - radC Sama_0327 0.54 -0.1 394,832 - radC Sama_0327 0.54 +0.4 394,838 + radC Sama_0327 0.55 +2.2 394,838 + radC Sama_0327 0.55 +2.2 394,838 + radC Sama_0327 0.55 +1.6 394,838 + radC Sama_0327 0.55 +0.8 394,839 - radC Sama_0327 0.55 +0.3 394,839 - radC Sama_0327 0.55 +0.6 394,839 - radC Sama_0327 0.55 +0.8 394,907 + radC Sama_0327 0.65 -1.2 394,907 + radC Sama_0327 0.65 +0.4 394,907 + radC Sama_0327 0.65 -0.1 394,907 + radC Sama_0327 0.65 +1.2 394,907 + radC Sama_0327 0.65 +1.5 394,907 + radC Sama_0327 0.65 +1.0 394,907 + radC Sama_0327 0.65 +0.9 394,907 + radC Sama_0327 0.65 +0.8 394,907 + radC Sama_0327 0.65 -0.1 394,907 + radC Sama_0327 0.65 +2.4 394,908 - radC Sama_0327 0.65 -0.7 394,908 - radC Sama_0327 0.65 -0.5 394,908 - radC Sama_0327 0.65 +0.3 394,908 - radC Sama_0327 0.65 +1.5 394,908 - radC Sama_0327 0.65 +1.3 394,908 - radC Sama_0327 0.65 -2.2 394,908 - radC Sama_0327 0.65 +0.1 394,908 - radC Sama_0327 0.65 +1.6 394,922 + radC Sama_0327 0.67 +1.4 394,922 + radC Sama_0327 0.67 +2.3 394,922 + radC Sama_0327 0.67 +0.5 394,922 + radC Sama_0327 0.67 +0.3 394,922 + radC Sama_0327 0.67 +2.2 394,923 - radC Sama_0327 0.67 +0.6 394,923 - radC Sama_0327 0.67 +0.0 394,923 - radC Sama_0327 0.67 -1.9 394,923 - radC Sama_0327 0.67 +3.2 394,923 - radC Sama_0327 0.67 +0.4 394,923 - radC Sama_0327 0.67 +1.1 394,923 - radC Sama_0327 0.67 +1.2 394,925 - radC Sama_0327 0.67 -1.1 395,066 + radC Sama_0327 0.88 +2.4 395,066 + radC Sama_0327 0.88 +1.5 395,066 + radC Sama_0327 0.88 +2.6 395,066 + radC Sama_0327 0.88 +2.7 395,066 + radC Sama_0327 0.88 +2.3 395,066 + radC Sama_0327 0.88 +3.0 395,066 + radC Sama_0327 0.88 +3.8 395,066 + radC Sama_0327 0.88 +3.2 395,066 + radC Sama_0327 0.88 +2.1 395,066 + radC Sama_0327 0.88 +2.2 395,066 + radC Sama_0327 0.88 +1.9 395,066 + radC Sama_0327 0.88 +3.2 395,066 + radC Sama_0327 0.88 +1.8 395,066 + radC Sama_0327 0.88 +2.2 395,066 + radC Sama_0327 0.88 +2.6 395,066 + radC Sama_0327 0.88 +2.2 395,066 + radC Sama_0327 0.88 -0.8 395,066 + radC Sama_0327 0.88 +1.0 395,067 - radC Sama_0327 0.88 +1.7 395,067 - radC Sama_0327 0.88 +0.9 395,067 - radC Sama_0327 0.88 +1.8 395,067 - radC Sama_0327 0.88 +0.3 395,067 - radC Sama_0327 0.88 +1.3 395,067 - radC Sama_0327 0.88 +1.4 395,067 - radC Sama_0327 0.88 -2.6 395,067 - radC Sama_0327 0.88 +0.2 395,067 - radC Sama_0327 0.88 +0.4 395,067 - radC Sama_0327 0.88 +0.9 395,072 + radC Sama_0327 0.89 +1.3 395,072 + radC Sama_0327 0.89 +1.4 395,072 + radC Sama_0327 0.89 +1.8 395,072 + radC Sama_0327 0.89 +2.8 395,072 + radC Sama_0327 0.89 +2.8 395,072 + radC Sama_0327 0.89 +3.1 395,072 + radC Sama_0327 0.89 +2.6 395,072 + radC Sama_0327 0.89 +2.2 395,072 + radC Sama_0327 0.89 +1.0 395,072 + radC Sama_0327 0.89 +0.7 395,072 + radC Sama_0327 0.89 +1.5 395,073 - radC Sama_0327 0.89 +0.0 395,073 - radC Sama_0327 0.89 +0.2 395,073 - radC Sama_0327 0.89 -1.9 395,073 - radC Sama_0327 0.89 +2.0 395,073 - radC Sama_0327 0.89 +0.9 395,073 - radC Sama_0327 0.89 +1.1 395,073 - radC Sama_0327 0.89 +1.0 395,073 - radC Sama_0327 0.89 +2.4 395,073 - radC Sama_0327 0.89 +2.5 395,073 - radC Sama_0327 0.89 +1.0 395,073 - radC Sama_0327 0.89 +1.6 395,073 - radC Sama_0327 0.89 +0.2 395,096 + +2.2 395,097 - +2.4 395,097 - -0.3 395,097 - +1.1 395,111 + +2.3 395,112 - +2.0 395,150 + +2.4 395,151 - +0.7 395,731 + -0.3 395,764 + -0.1 395,764 + +0.0 395,764 + +0.3 395,764 + -0.2 395,765 - +0.3 395,765 - +1.0 395,765 - -1.4 395,765 - -2.0 395,765 - -0.2 395,771 + -0.7 395,771 + -0.3 395,772 - -0.4 395,772 - +1.2 395,772 - +0.1 395,779 + -0.1 395,779 + +0.7 395,779 + -0.0 395,780 - -0.8 395,780 - +1.6 395,780 - +1.0 395,780 - -1.1 395,791 - +0.2 395,863 + +0.7 395,970 + +1.8 396,007 + +1.0 396,007 + +1.9 396,007 + +0.9 396,007 + +1.8 396,008 - -1.2 396,008 - -0.6 396,008 - -1.9 396,008 - -1.4 396,011 + -0.0 396,011 + -0.5 396,011 + -0.4 396,011 + -1.8 396,011 + +0.9 396,011 + +0.3 396,011 + +0.7 396,011 + -0.8 396,011 + +0.1 396,012 - -0.4 396,012 - +0.2 396,012 - -0.2 396,012 - -1.0 396,012 - -0.3 396,012 - -0.5 396,012 - -0.4 396,012 - -1.8 396,065 + +0.5 396,065 + +0.0 396,065 + -0.9 396,065 + -1.3 396,065 + -0.9 396,065 + -2.1 396,065 + +0.2 396,065 + -1.0 396,065 + -0.2 396,065 + -0.9 396,065 + +0.6 396,065 + -1.0 396,065 + +1.0 396,065 + -0.1 396,065 + -0.4 396,066 - +0.5 396,066 - -0.1 396,066 - +0.3 396,066 - -2.4 396,066 - +0.9 396,066 - -0.6 396,066 - -1.3 396,066 - -0.3 396,066 - +1.2 396,066 - -0.7 396,127 - Sama_0330 0.12 -0.3 396,139 + Sama_0330 0.13 +0.0 396,139 + Sama_0330 0.13 +0.9 396,139 + Sama_0330 0.13 +1.0 396,139 + Sama_0330 0.13 -0.2 396,139 + Sama_0330 0.13 -2.5 396,140 - Sama_0330 0.13 -1.2 396,140 - Sama_0330 0.13 -2.5
Or see this region's nucleotide sequence