Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0315 and Sama_0316 are separated by 133 nucleotides
Sama_0315: Sama_0315 - hypothetical protein (RefSeq), at 380,381 to 380,974
_0315
Sama_0316: Sama_0316 - hypothetical protein (RefSeq), at 381,108 to 381,935
_0316
Position (kb) 381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 380.120 kb on - strand at 380.123 kb on - strand at 380.141 kb on + strand at 380.142 kb on - strand at 380.142 kb on - strand at 380.190 kb on + strand at 380.193 kb on + strand at 380.193 kb on + strand at 380.233 kb on + strand at 380.234 kb on - strand at 380.242 kb on + strand at 380.309 kb on + strand at 380.310 kb on - strand at 380.343 kb on - strand at 380.352 kb on + strand at 380.353 kb on - strand at 380.353 kb on - strand at 380.358 kb on + strand at 380.359 kb on - strand at 380.370 kb on + strand at 380.371 kb on - strand at 380.371 kb on - strand at 380.452 kb on + strand, within Sama_0315 at 380.452 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.500 kb on + strand, within Sama_0315 at 380.511 kb on + strand, within Sama_0315 at 380.512 kb on - strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.543 kb on + strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.629 kb on - strand, within Sama_0315 at 380.633 kb on - strand, within Sama_0315 at 380.685 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.776 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.797 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.803 kb on + strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.804 kb on - strand, within Sama_0315 at 380.830 kb on + strand, within Sama_0315 at 380.879 kb on + strand, within Sama_0315 at 380.879 kb on + strand, within Sama_0315 at 380.880 kb on - strand, within Sama_0315 at 380.880 kb on - strand, within Sama_0315 at 380.918 kb on + strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.955 kb on - strand at 380.998 kb on + strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 380.999 kb on - strand at 381.011 kb on + strand at 381.011 kb on + strand at 381.011 kb on + strand at 381.012 kb on - strand at 381.012 kb on - strand at 381.012 kb on - strand at 381.018 kb on - strand at 381.018 kb on - strand at 381.018 kb on - strand at 381.021 kb on + strand at 381.021 kb on + strand at 381.022 kb on - strand at 381.022 kb on - strand at 381.035 kb on + strand at 381.036 kb on - strand at 381.110 kb on - strand at 381.141 kb on - strand at 381.152 kb on + strand at 381.153 kb on - strand at 381.153 kb on - strand at 381.241 kb on - strand, within Sama_0316 at 381.245 kb on + strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.272 kb on - strand, within Sama_0316 at 381.378 kb on + strand, within Sama_0316 at 381.379 kb on - strand, within Sama_0316 at 381.446 kb on + strand, within Sama_0316 at 381.450 kb on + strand, within Sama_0316 at 381.451 kb on - strand, within Sama_0316 at 381.451 kb on - strand, within Sama_0316 at 381.517 kb on - strand, within Sama_0316 at 381.520 kb on - strand, within Sama_0316 at 381.675 kb on - strand, within Sama_0316 at 381.682 kb on - strand, within Sama_0316 at 381.682 kb on - strand, within Sama_0316 at 381.749 kb on + strand, within Sama_0316 at 381.749 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.752 kb on + strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.753 kb on - strand, within Sama_0316 at 381.755 kb on + strand, within Sama_0316 at 381.909 kb on - strand at 381.961 kb on + strand at 381.972 kb on + strand at 381.973 kb on - strand at 381.973 kb on - strand at 381.980 kb on - strand at 381.980 kb on - strand at 381.980 kb on - strand at 381.987 kb on + strand at 381.988 kb on - strand at 382.196 kb on + strand at 382.196 kb on + strand at 382.207 kb on + strand at 382.207 kb on + strand at 382.207 kb on + strand at 382.208 kb on - strand at 382.208 kb on - strand at 382.208 kb on - strand at 382.208 kb on - strand at 382.212 kb on + strand at 382.212 kb on + strand at 382.227 kb on + strand at 382.227 kb on + strand at 382.227 kb on + strand at 382.232 kb on - strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.258 kb on + strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.259 kb on - strand at 382.262 kb on - strand at 382.262 kb on - strand at 382.262 kb on - strand at 382.303 kb on + strand at 382.303 kb on + strand at 382.303 kb on + strand at 382.304 kb on - strand at 382.304 kb on - strand at 382.304 kb on - strand at 382.353 kb on + strand at 382.354 kb on - strand at 382.385 kb on - strand at 382.423 kb on - strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.538 kb on + strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.539 kb on - strand at 382.562 kb on + strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.563 kb on - strand at 382.615 kb on + strand at 382.616 kb on - strand at 382.626 kb on + strand at 382.626 kb on + strand at 382.626 kb on + strand at 382.629 kb on + strand at 382.630 kb on - strand at 382.648 kb on + strand at 382.648 kb on + strand at 382.649 kb on - strand at 382.652 kb on + strand at 382.721 kb on + strand at 382.721 kb on + strand at 382.721 kb on + strand at 382.721 kb on - strand at 382.721 kb on + strand at 382.722 kb on - strand at 382.732 kb on + strand at 382.741 kb on + strand at 382.741 kb on + strand at 382.742 kb on - strand at 382.780 kb on + strand at 382.833 kb on + strand at 382.833 kb on + strand at 382.834 kb on - strand at 382.834 kb on - strand at 382.834 kb on - strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.837 kb on + strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.838 kb on - strand at 382.853 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.863 kb on + strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.864 kb on - strand at 382.873 kb on - strand at 382.920 kb on + strand at 382.920 kb on + strand at 382.921 kb on - strand at 382.921 kb on - strand at 382.921 kb on - strand at 382.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 380,120 - -0.8 380,123 - -0.5 380,141 + +1.1 380,142 - +1.1 380,142 - +0.6 380,190 + -0.5 380,193 + +0.8 380,193 + +0.7 380,233 + +0.5 380,234 - -0.7 380,242 + +0.3 380,309 + +0.5 380,310 - -0.5 380,343 - +0.6 380,352 + -0.8 380,353 - -0.9 380,353 - -0.5 380,358 + +0.2 380,359 - -1.3 380,370 + +0.9 380,371 - -0.5 380,371 - -2.7 380,452 + Sama_0315 0.12 +0.2 380,452 + Sama_0315 0.12 +1.1 380,500 + Sama_0315 0.20 +0.9 380,500 + Sama_0315 0.20 +1.5 380,500 + Sama_0315 0.20 +0.7 380,500 + Sama_0315 0.20 -1.0 380,500 + Sama_0315 0.20 -0.2 380,500 + Sama_0315 0.20 -1.3 380,511 + Sama_0315 0.22 +0.6 380,512 - Sama_0315 0.22 -1.2 380,543 + Sama_0315 0.27 +0.3 380,543 + Sama_0315 0.27 +1.1 380,629 - Sama_0315 0.42 -1.2 380,629 - Sama_0315 0.42 -1.0 380,629 - Sama_0315 0.42 -0.5 380,629 - Sama_0315 0.42 -0.5 380,633 - Sama_0315 0.42 -0.2 380,685 + Sama_0315 0.51 -0.8 380,776 + Sama_0315 0.66 +0.1 380,776 + Sama_0315 0.66 -0.4 380,797 + Sama_0315 0.70 -0.8 380,797 + Sama_0315 0.70 -1.5 380,803 + Sama_0315 0.71 +0.9 380,803 + Sama_0315 0.71 -0.2 380,804 - Sama_0315 0.71 +1.1 380,804 - Sama_0315 0.71 -0.0 380,804 - Sama_0315 0.71 -0.5 380,804 - Sama_0315 0.71 -1.9 380,830 + Sama_0315 0.76 -1.3 380,879 + Sama_0315 0.84 -1.5 380,879 + Sama_0315 0.84 +1.4 380,880 - Sama_0315 0.84 +0.0 380,880 - Sama_0315 0.84 -0.3 380,918 + -2.4 380,955 - +0.7 380,955 - +1.2 380,955 - +0.3 380,955 - +1.5 380,955 - -0.3 380,955 - -0.1 380,955 - +0.8 380,955 - -1.5 380,998 + -0.2 380,999 - -1.0 380,999 - +0.3 380,999 - -0.9 380,999 - -0.8 380,999 - -2.2 381,011 + -0.0 381,011 + +0.9 381,011 + -0.9 381,012 - -1.2 381,012 - +1.7 381,012 - +0.6 381,018 - +0.9 381,018 - -1.2 381,018 - +0.1 381,021 + -2.1 381,021 + -2.1 381,022 - +1.0 381,022 - +0.6 381,035 + -0.9 381,036 - +0.1 381,110 - -1.8 381,141 - +0.1 381,152 + -0.5 381,153 - +1.2 381,153 - -2.5 381,241 - Sama_0316 0.16 -2.3 381,245 + Sama_0316 0.17 +0.1 381,272 - Sama_0316 0.20 -2.2 381,272 - Sama_0316 0.20 -1.1 381,272 - Sama_0316 0.20 -0.6 381,272 - Sama_0316 0.20 -1.0 381,272 - Sama_0316 0.20 -1.7 381,378 + Sama_0316 0.33 -1.6 381,379 - Sama_0316 0.33 +1.8 381,446 + Sama_0316 0.41 -0.9 381,450 + Sama_0316 0.41 +0.3 381,451 - Sama_0316 0.41 +1.1 381,451 - Sama_0316 0.41 -1.2 381,517 - Sama_0316 0.49 -0.8 381,520 - Sama_0316 0.50 +0.3 381,675 - Sama_0316 0.68 -2.0 381,682 - Sama_0316 0.69 +0.5 381,682 - Sama_0316 0.69 -1.4 381,749 + Sama_0316 0.77 +1.3 381,749 + Sama_0316 0.77 +0.4 381,752 + Sama_0316 0.78 +0.3 381,752 + Sama_0316 0.78 +1.2 381,752 + Sama_0316 0.78 -0.9 381,753 - Sama_0316 0.78 -1.2 381,753 - Sama_0316 0.78 -0.2 381,753 - Sama_0316 0.78 +0.3 381,755 + Sama_0316 0.78 +0.4 381,909 - +0.6 381,961 + -0.0 381,972 + -0.1 381,973 - +0.5 381,973 - +0.9 381,980 - -0.2 381,980 - -3.1 381,980 - +0.2 381,987 + +0.2 381,988 - +0.1 382,196 + -1.2 382,196 + +0.2 382,207 + +1.3 382,207 + +1.6 382,207 + +0.0 382,208 - -0.3 382,208 - +1.1 382,208 - +0.3 382,208 - +0.2 382,212 + -0.8 382,212 + -0.2 382,227 + +0.1 382,227 + -1.3 382,227 + +0.6 382,232 - -0.5 382,258 + -0.8 382,258 + -1.6 382,258 + -1.4 382,258 + -0.1 382,258 + -0.2 382,258 + -0.1 382,259 - -1.2 382,259 - -0.2 382,259 - +1.8 382,259 - +1.7 382,259 - -0.7 382,262 - -0.3 382,262 - -1.0 382,262 - -1.2 382,303 + -1.0 382,303 + -0.5 382,303 + -1.6 382,304 - +0.1 382,304 - +1.0 382,304 - -1.1 382,353 + +0.7 382,354 - -1.4 382,385 - +0.1 382,423 - +1.4 382,538 + +0.1 382,538 + +0.3 382,538 + +0.8 382,538 + -1.0 382,538 + -1.1 382,539 - +0.6 382,539 - -1.7 382,539 - +0.3 382,539 - +0.3 382,539 - -0.0 382,539 - +1.4 382,539 - -1.8 382,539 - +0.8 382,539 - +0.1 382,539 - -1.6 382,562 + +0.4 382,563 - -1.7 382,563 - +1.0 382,563 - -0.2 382,563 - -0.8 382,563 - -1.0 382,615 + +0.6 382,616 - +0.4 382,626 + +1.8 382,626 + +0.2 382,626 + -0.1 382,629 + +0.5 382,630 - +0.2 382,648 + +0.3 382,648 + -0.2 382,649 - -1.8 382,652 + -1.0 382,721 + -1.7 382,721 + -0.8 382,721 + +1.1 382,721 - +0.0 382,721 + -0.5 382,722 - -0.2 382,732 + -0.1 382,741 + -0.5 382,741 + +0.8 382,742 - -1.4 382,780 + +0.1 382,833 + -0.2 382,833 + -1.0 382,834 - -1.2 382,834 - -0.8 382,834 - -0.2 382,837 + -1.0 382,837 + +0.8 382,837 + +0.4 382,837 + +1.8 382,837 + -2.1 382,837 + -1.4 382,837 + -1.8 382,838 - +2.0 382,838 - +0.6 382,838 - +1.4 382,838 - -0.5 382,838 - -1.0 382,853 + -0.6 382,863 + +0.1 382,863 + -1.4 382,863 + -0.7 382,863 + -0.7 382,863 + -0.8 382,863 + -1.0 382,863 + -0.2 382,863 + -1.6 382,863 + +0.6 382,863 + -0.9 382,863 + -0.6 382,863 + -1.8 382,864 - -0.5 382,864 - +0.0 382,864 - +0.0 382,864 - +0.8 382,864 - -0.8 382,873 - -2.2 382,920 + +0.2 382,920 + -1.7 382,921 - +0.4 382,921 - +0.5 382,921 - +0.1 382,924 - -1.4
Or see this region's nucleotide sequence