Strain Fitness in Shewanella amazonensis SB2B around Sama_0245

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0243 and Sama_0244 are separated by 1 nucleotidesSama_0244 and Sama_0245 are separated by 11 nucleotidesSama_0245 and Sama_0246 are separated by 310 nucleotidesSama_0246 and Sama_0247 are separated by 148 nucleotides Sama_0243: Sama_0243 - heme exporter protein CcmC (RefSeq), at 267,296 to 268,042 _0243 Sama_0244: Sama_0244 - heme exporter protein CcmB (RefSeq), at 268,044 to 268,730 _0244 Sama_0245: Sama_0245 - cytochrome c biogenesis protein CcmA (RefSeq), at 268,742 to 269,395 _0245 Sama_0246: Sama_0246 - cytochrome c (RefSeq), at 269,706 to 269,999 _0246 Sama_0247: Sama_0247 - cytochrome c-type biogenesis protein CcmH (RefSeq), at 270,148 to 271,401 _0247 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 267.784 kb on + strand, within Sama_0243at 267.805 kb on + strand, within Sama_0243at 267.806 kb on - strand, within Sama_0243at 267.829 kb on + strand, within Sama_0243at 267.829 kb on + strand, within Sama_0243at 267.830 kb on - strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.831 kb on + strand, within Sama_0243at 267.832 kb on - strand, within Sama_0243at 267.832 kb on - strand, within Sama_0243at 267.868 kb on + strand, within Sama_0243at 267.900 kb on + strand, within Sama_0243at 267.901 kb on - strand, within Sama_0243at 267.901 kb on - strand, within Sama_0243at 267.901 kb on - strand, within Sama_0243at 267.946 kb on + strand, within Sama_0243at 267.978 kb on - strandat 267.978 kb on - strandat 267.992 kb on + strandat 268.000 kb on - strandat 268.028 kb on + strandat 268.029 kb on - strandat 268.043 kb on - strandat 268.045 kb on + strandat 268.045 kb on + strandat 268.046 kb on - strandat 268.046 kb on - strandat 268.049 kb on + strandat 268.050 kb on - strandat 268.050 kb on - strandat 268.119 kb on + strand, within Sama_0244at 268.119 kb on + strand, within Sama_0244at 268.120 kb on - strand, within Sama_0244at 268.120 kb on - strand, within Sama_0244at 268.120 kb on - strand, within Sama_0244at 268.122 kb on + strand, within Sama_0244at 268.142 kb on - strand, within Sama_0244at 268.142 kb on - strand, within Sama_0244at 268.147 kb on - strand, within Sama_0244at 268.201 kb on + strand, within Sama_0244at 268.202 kb on - strand, within Sama_0244at 268.202 kb on - strand, within Sama_0244at 268.202 kb on - strand, within Sama_0244at 268.212 kb on + strand, within Sama_0244at 268.213 kb on - strand, within Sama_0244at 268.215 kb on - strand, within Sama_0244at 268.216 kb on - strand, within Sama_0244at 268.231 kb on - strand, within Sama_0244at 268.241 kb on + strand, within Sama_0244at 268.242 kb on - strand, within Sama_0244at 268.242 kb on - strand, within Sama_0244at 268.245 kb on + strand, within Sama_0244at 268.245 kb on + strand, within Sama_0244at 268.245 kb on + strand, within Sama_0244at 268.246 kb on - strand, within Sama_0244at 268.246 kb on - strand, within Sama_0244at 268.269 kb on + strand, within Sama_0244at 268.269 kb on + strand, within Sama_0244at 268.270 kb on - strand, within Sama_0244at 268.270 kb on - strand, within Sama_0244at 268.270 kb on - strand, within Sama_0244at 268.270 kb on - strand, within Sama_0244at 268.270 kb on - strand, within Sama_0244at 268.298 kb on + strand, within Sama_0244at 268.330 kb on + strand, within Sama_0244at 268.330 kb on + strand, within Sama_0244at 268.331 kb on - strand, within Sama_0244at 268.331 kb on - strand, within Sama_0244at 268.331 kb on - strand, within Sama_0244at 268.439 kb on - strand, within Sama_0244at 268.439 kb on - strand, within Sama_0244at 268.456 kb on - strand, within Sama_0244at 268.539 kb on + strand, within Sama_0244at 268.573 kb on - strand, within Sama_0244at 268.573 kb on - strand, within Sama_0244at 268.689 kb on + strandat 268.689 kb on + strandat 268.690 kb on - strandat 268.709 kb on + strandat 268.715 kb on + strandat 268.716 kb on - strandat 268.716 kb on - strandat 268.716 kb on - strandat 268.744 kb on - strandat 268.744 kb on - strandat 268.745 kb on + strandat 268.745 kb on + strandat 268.745 kb on + strandat 268.745 kb on + strandat 268.745 kb on + strandat 268.745 kb on + strandat 268.745 kb on + strandat 268.746 kb on - strandat 268.746 kb on - strandat 268.746 kb on - strandat 268.746 kb on - strandat 268.746 kb on - strandat 268.746 kb on - strandat 268.755 kb on + strandat 268.756 kb on - strandat 268.897 kb on + strand, within Sama_0245at 268.980 kb on - strand, within Sama_0245at 269.055 kb on + strand, within Sama_0245at 269.070 kb on - strand, within Sama_0245at 269.081 kb on - strand, within Sama_0245at 269.133 kb on + strand, within Sama_0245at 269.133 kb on + strand, within Sama_0245at 269.134 kb on - strand, within Sama_0245at 269.138 kb on + strand, within Sama_0245at 269.138 kb on + strand, within Sama_0245at 269.139 kb on - strand, within Sama_0245at 269.139 kb on - strand, within Sama_0245at 269.139 kb on - strand, within Sama_0245at 269.139 kb on - strand, within Sama_0245at 269.282 kb on - strand, within Sama_0245at 269.361 kb on - strandat 269.387 kb on + strandat 269.388 kb on - strandat 269.405 kb on + strandat 269.405 kb on + strandat 269.406 kb on - strandat 269.406 kb on - strandat 269.406 kb on - strandat 269.406 kb on - strandat 269.416 kb on - strandat 269.430 kb on - strandat 269.432 kb on + strandat 269.433 kb on - strandat 269.433 kb on - strandat 269.433 kb on - strandat 269.433 kb on - strandat 269.433 kb on - strandat 269.433 kb on - strandat 269.433 kb on - strandat 269.437 kb on + strandat 269.437 kb on + strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.438 kb on - strandat 269.456 kb on - strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.466 kb on + strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.467 kb on - strandat 269.471 kb on + strandat 269.471 kb on + strandat 269.471 kb on + strandat 269.472 kb on - strandat 269.472 kb on - strandat 269.472 kb on - strandat 269.472 kb on - strandat 269.475 kb on + strandat 269.475 kb on + strandat 269.476 kb on - strandat 269.476 kb on - strandat 269.500 kb on + strandat 269.501 kb on - strandat 269.501 kb on - strandat 269.501 kb on - strandat 269.529 kb on + strandat 269.539 kb on + strandat 269.540 kb on - strandat 269.541 kb on + strandat 269.542 kb on - strandat 269.542 kb on - strandat 269.542 kb on - strandat 269.560 kb on + strandat 269.560 kb on + strandat 269.625 kb on + strandat 269.625 kb on + strandat 269.625 kb on + strandat 269.626 kb on - strandat 269.626 kb on - strandat 269.633 kb on + strandat 269.642 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.679 kb on + strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.680 kb on - strandat 269.683 kb on + strandat 269.683 kb on + strandat 269.684 kb on - strandat 269.684 kb on - strandat 269.693 kb on - strandat 269.720 kb on - strandat 269.720 kb on - strandat 269.734 kb on + strandat 269.734 kb on + strandat 269.734 kb on + strandat 269.734 kb on + strandat 269.735 kb on - strandat 269.735 kb on - strandat 269.735 kb on - strandat 269.735 kb on - strandat 269.747 kb on + strand, within Sama_0246at 269.747 kb on + strand, within Sama_0246at 269.762 kb on - strand, within Sama_0246at 269.785 kb on + strand, within Sama_0246at 269.785 kb on + strand, within Sama_0246at 269.785 kb on + strand, within Sama_0246at 269.786 kb on - strand, within Sama_0246at 269.786 kb on - strand, within Sama_0246at 269.786 kb on - strand, within Sama_0246at 269.786 kb on - strand, within Sama_0246at 269.786 kb on - strand, within Sama_0246at 269.787 kb on + strand, within Sama_0246at 269.787 kb on + strand, within Sama_0246at 269.787 kb on + strand, within Sama_0246at 269.787 kb on + strand, within Sama_0246at 269.787 kb on + strand, within Sama_0246at 269.787 kb on + strand, within Sama_0246at 269.788 kb on - strand, within Sama_0246at 269.788 kb on - strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.789 kb on + strand, within Sama_0246at 269.790 kb on - strand, within Sama_0246at 269.790 kb on - strand, within Sama_0246at 269.790 kb on - strand, within Sama_0246at 269.790 kb on - strand, within Sama_0246at 269.790 kb on - strand, within Sama_0246at 269.790 kb on - strand, within Sama_0246at 269.806 kb on + strand, within Sama_0246at 269.806 kb on + strand, within Sama_0246at 269.807 kb on - strand, within Sama_0246at 269.807 kb on - strand, within Sama_0246at 269.807 kb on - strand, within Sama_0246at 269.807 kb on - strand, within Sama_0246at 269.807 kb on - strand, within Sama_0246at 269.824 kb on + strand, within Sama_0246at 269.882 kb on + strand, within Sama_0246at 269.882 kb on + strand, within Sama_0246at 269.955 kb on - strand, within Sama_0246at 270.008 kb on + strandat 270.008 kb on + strandat 270.008 kb on + strandat 270.008 kb on + strandat 270.009 kb on - strandat 270.009 kb on - strandat 270.042 kb on - strandat 270.118 kb on + strandat 270.118 kb on + strandat 270.123 kb on + strandat 270.124 kb on - strandat 270.131 kb on + strandat 270.131 kb on + strandat 270.131 kb on + strandat 270.132 kb on - strandat 270.149 kb on + strandat 270.150 kb on - strandat 270.170 kb on - strandat 270.170 kb on - strandat 270.207 kb on + strandat 270.207 kb on + strandat 270.207 kb on + strandat 270.208 kb on - strandat 270.208 kb on - strandat 270.219 kb on + strandat 270.220 kb on - strandat 270.220 kb on - strandat 270.220 kb on + strandat 270.241 kb on - strandat 270.315 kb on + strand, within Sama_0247at 270.316 kb on - strand, within Sama_0247at 270.316 kb on - strand, within Sama_0247at 270.324 kb on + strand, within Sama_0247at 270.324 kb on + strand, within Sama_0247at 270.325 kb on - strand, within Sama_0247at 270.325 kb on - strand, within Sama_0247at 270.325 kb on - strand, within Sama_0247at 270.339 kb on + strand, within Sama_0247at 270.340 kb on - strand, within Sama_0247at 270.340 kb on - strand, within Sama_0247at 270.340 kb on - strand, within Sama_0247

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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267,784 + Sama_0243 0.65 -0.7
267,805 + Sama_0243 0.68 -1.2
267,806 - Sama_0243 0.68 -1.5
267,829 + Sama_0243 0.71 -1.0
267,829 + Sama_0243 0.71 +0.8
267,830 - Sama_0243 0.71 +0.0
267,831 + Sama_0243 0.72 -0.7
267,831 + Sama_0243 0.72 -0.2
267,831 + Sama_0243 0.72 -0.5
267,831 + Sama_0243 0.72 -0.5
267,831 + Sama_0243 0.72 -1.0
267,831 + Sama_0243 0.72 -0.2
267,831 + Sama_0243 0.72 -0.5
267,832 - Sama_0243 0.72 -0.5
267,832 - Sama_0243 0.72 -0.5
267,868 + Sama_0243 0.77 -1.0
267,900 + Sama_0243 0.81 -1.0
267,901 - Sama_0243 0.81 -0.5
267,901 - Sama_0243 0.81 -2.2
267,901 - Sama_0243 0.81 -0.5
267,946 + Sama_0243 0.87 -1.3
267,978 - -0.5
267,978 - -1.2
267,992 + -1.0
268,000 - -2.0
268,028 + -0.2
268,029 - -0.5
268,043 - -1.2
268,045 + -0.5
268,045 + -2.1
268,046 - -1.0
268,046 - -2.2
268,049 + -0.2
268,050 - -1.6
268,050 - -1.3
268,119 + Sama_0244 0.11 +0.0
268,119 + Sama_0244 0.11 -0.2
268,120 - Sama_0244 0.11 -1.0
268,120 - Sama_0244 0.11 -0.2
268,120 - Sama_0244 0.11 +0.6
268,122 + Sama_0244 0.11 -0.2
268,142 - Sama_0244 0.14 -0.7
268,142 - Sama_0244 0.14 +1.8
268,147 - Sama_0244 0.15 +0.3
268,201 + Sama_0244 0.23 -1.2
268,202 - Sama_0244 0.23 -1.0
268,202 - Sama_0244 0.23 -1.5
268,202 - Sama_0244 0.23 -1.6
268,212 + Sama_0244 0.24 -1.2
268,213 - Sama_0244 0.25 -0.5
268,215 - Sama_0244 0.25 -0.7
268,216 - Sama_0244 0.25 -1.0
268,231 - Sama_0244 0.27 -0.7
268,241 + Sama_0244 0.29 -1.0
268,242 - Sama_0244 0.29 -0.2
268,242 - Sama_0244 0.29 -1.0
268,245 + Sama_0244 0.29 +0.8
268,245 + Sama_0244 0.29 -1.2
268,245 + Sama_0244 0.29 +0.3
268,246 - Sama_0244 0.29 -0.7
268,246 - Sama_0244 0.29 -1.3
268,269 + Sama_0244 0.33 +0.3
268,269 + Sama_0244 0.33 -0.2
268,270 - Sama_0244 0.33 -0.5
268,270 - Sama_0244 0.33 -0.7
268,270 - Sama_0244 0.33 -1.2
268,270 - Sama_0244 0.33 -1.2
268,270 - Sama_0244 0.33 -2.4
268,298 + Sama_0244 0.37 -0.2
268,330 + Sama_0244 0.42 -1.0
268,330 + Sama_0244 0.42 -1.9
268,331 - Sama_0244 0.42 -1.2
268,331 - Sama_0244 0.42 -2.0
268,331 - Sama_0244 0.42 -1.2
268,439 - Sama_0244 0.57 -1.6
268,439 - Sama_0244 0.57 -0.2
268,456 - Sama_0244 0.60 -0.5
268,539 + Sama_0244 0.72 -1.0
268,573 - Sama_0244 0.77 -2.3
268,573 - Sama_0244 0.77 -1.7
268,689 + -0.2
268,689 + -1.6
268,690 - -0.2
268,709 + -1.6
268,715 + -1.2
268,716 - +0.3
268,716 - -1.3
268,716 - -0.7
268,744 - -1.6
268,744 - -1.4
268,745 + -2.7
268,745 + -2.2
268,745 + -1.7
268,745 + -0.7
268,745 + -0.2
268,745 + -0.5
268,745 + -1.5
268,746 - -1.6
268,746 - -1.0
268,746 - -1.2
268,746 - -0.7
268,746 - -1.6
268,746 - -1.5
268,755 + -0.5
268,756 - -1.5
268,897 + Sama_0245 0.24 +0.3
268,980 - Sama_0245 0.36 -0.5
269,055 + Sama_0245 0.48 -3.6
269,070 - Sama_0245 0.50 -0.7
269,081 - Sama_0245 0.52 -1.2
269,133 + Sama_0245 0.60 -1.2
269,133 + Sama_0245 0.60 -1.0
269,134 - Sama_0245 0.60 -1.5
269,138 + Sama_0245 0.61 -0.5
269,138 + Sama_0245 0.61 -1.7
269,139 - Sama_0245 0.61 -0.2
269,139 - Sama_0245 0.61 -1.2
269,139 - Sama_0245 0.61 -1.6
269,139 - Sama_0245 0.61 -1.3
269,282 - Sama_0245 0.83 -1.2
269,361 - +0.1
269,387 + -1.7
269,388 - -0.7
269,405 + -1.0
269,405 + -1.5
269,406 - +1.0
269,406 - -1.9
269,406 - -2.0
269,406 - +0.0
269,416 - +0.1
269,430 - -0.7
269,432 + -2.3
269,433 - +0.5
269,433 - -0.5
269,433 - -2.4
269,433 - +0.1
269,433 - -0.7
269,433 - +0.3
269,433 - +0.8
269,437 + -1.3
269,437 + +0.8
269,438 - -1.1
269,438 - +1.0
269,438 - -0.9
269,438 - +0.6
269,438 - +0.7
269,438 - -0.3
269,438 - +0.3
269,438 - -2.0
269,456 - -0.8
269,466 + +0.3
269,466 + -1.9
269,466 + -0.9
269,467 - +0.5
269,467 - -2.3
269,467 - +0.8
269,471 + +0.3
269,471 + +0.6
269,471 + +0.5
269,472 - -0.1
269,472 - +0.2
269,472 - +1.4
269,472 - -0.3
269,475 + +0.5
269,475 + +0.6
269,476 - -0.3
269,476 - -0.0
269,500 + -0.6
269,501 - -0.9
269,501 - +0.0
269,501 - -1.0
269,529 + +0.3
269,539 + +0.1
269,540 - -0.5
269,541 + -2.4
269,542 - -0.6
269,542 - -0.3
269,542 - -0.7
269,560 + -0.9
269,560 + +0.8
269,625 + -0.4
269,625 + +0.1
269,625 + -0.3
269,626 - -2.2
269,626 - -1.0
269,633 + -1.1
269,642 + -0.7
269,679 + -0.7
269,679 + +0.5
269,679 + -0.6
269,679 + -0.1
269,679 + -0.2
269,679 + -1.0
269,679 + -0.7
269,679 + -0.8
269,679 + +0.6
269,679 + +0.6
269,679 + -0.2
269,679 + +1.0
269,680 - -1.6
269,680 - -1.0
269,680 - -1.0
269,680 - -1.5
269,680 - -2.3
269,680 - -1.2
269,680 - -1.6
269,680 - -0.7
269,680 - -1.0
269,683 + -1.5
269,683 + -2.0
269,684 - -2.3
269,684 - -1.7
269,693 - -2.5
269,720 - -2.2
269,720 - -1.7
269,734 + -2.9
269,734 + -0.7
269,734 + -2.3
269,734 + -0.7
269,735 - -1.0
269,735 - -0.2
269,735 - +0.5
269,735 - -1.3
269,747 + Sama_0246 0.14 -1.0
269,747 + Sama_0246 0.14 -3.2
269,762 - Sama_0246 0.19 -1.2
269,785 + Sama_0246 0.27 -1.0
269,785 + Sama_0246 0.27 -1.5
269,785 + Sama_0246 0.27 -0.7
269,786 - Sama_0246 0.27 -1.6
269,786 - Sama_0246 0.27 -3.1
269,786 - Sama_0246 0.27 -0.5
269,786 - Sama_0246 0.27 -1.2
269,786 - Sama_0246 0.27 -1.6
269,787 + Sama_0246 0.28 -2.7
269,787 + Sama_0246 0.28 -1.6
269,787 + Sama_0246 0.28 -1.4
269,787 + Sama_0246 0.28 -0.9
269,787 + Sama_0246 0.28 -1.0
269,787 + Sama_0246 0.28 -2.3
269,788 - Sama_0246 0.28 -1.9
269,788 - Sama_0246 0.28 +0.3
269,789 + Sama_0246 0.28 -2.5
269,789 + Sama_0246 0.28 -1.5
269,789 + Sama_0246 0.28 -1.3
269,789 + Sama_0246 0.28 -1.9
269,789 + Sama_0246 0.28 -1.9
269,789 + Sama_0246 0.28 -0.2
269,789 + Sama_0246 0.28 -1.0
269,789 + Sama_0246 0.28 -0.2
269,789 + Sama_0246 0.28 -1.0
269,789 + Sama_0246 0.28 -2.2
269,790 - Sama_0246 0.29 +0.3
269,790 - Sama_0246 0.29 -0.7
269,790 - Sama_0246 0.29 +0.5
269,790 - Sama_0246 0.29 -1.0
269,790 - Sama_0246 0.29 -0.5
269,790 - Sama_0246 0.29 -2.3
269,806 + Sama_0246 0.34 -1.6
269,806 + Sama_0246 0.34 +0.3
269,807 - Sama_0246 0.34 -1.0
269,807 - Sama_0246 0.34 +0.3
269,807 - Sama_0246 0.34 -0.7
269,807 - Sama_0246 0.34 -0.5
269,807 - Sama_0246 0.34 -1.3
269,824 + Sama_0246 0.40 -2.4
269,882 + Sama_0246 0.60 -1.2
269,882 + Sama_0246 0.60 -1.2
269,955 - Sama_0246 0.85 -0.9
270,008 + -1.1
270,008 + -0.7
270,008 + -1.3
270,008 + -0.1
270,009 - +0.4
270,009 - +0.0
270,042 - -2.6
270,118 + +0.6
270,118 + -0.6
270,123 + -0.5
270,124 - +0.6
270,131 + -0.5
270,131 + -1.3
270,131 + +2.3
270,132 - -1.3
270,149 + -1.0
270,150 - -0.6
270,170 - -1.0
270,170 - +0.1
270,207 + -1.0
270,207 + -0.3
270,207 + -1.7
270,208 - +0.5
270,208 - +1.0
270,219 + -2.2
270,220 - -0.5
270,220 - -1.5
270,220 + -0.6
270,241 - -0.7
270,315 + Sama_0247 0.13 -0.6
270,316 - Sama_0247 0.13 -1.2
270,316 - Sama_0247 0.13 +0.8
270,324 + Sama_0247 0.14 -0.0
270,324 + Sama_0247 0.14 -2.1
270,325 - Sama_0247 0.14 +1.0
270,325 - Sama_0247 0.14 -0.6
270,325 - Sama_0247 0.14 +0.5
270,339 + Sama_0247 0.15 +0.8
270,340 - Sama_0247 0.15 +0.1
270,340 - Sama_0247 0.15 +3.0
270,340 - Sama_0247 0.15 -0.3

Or see this region's nucleotide sequence