Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0240 and Sama_0241 are separated by 81 nucleotides Sama_0241 and Sama_0242 overlap by 4 nucleotides Sama_0242 and Sama_0243 overlap by 1 nucleotides Sama_0243 and Sama_0244 are separated by 1 nucleotides
Sama_0240: Sama_0240 - hypothetical protein (RefSeq), at 265,558 to 266,529
_0240
Sama_0241: Sama_0241 - cytochrome c-type biogenesis protein CcmE (RefSeq), at 266,611 to 267,099
_0241
Sama_0242: Sama_0242 - heme exporter protein CcmD (RefSeq), at 267,096 to 267,296
_0242
Sama_0243: Sama_0243 - heme exporter protein CcmC (RefSeq), at 267,296 to 268,042
_0243
Sama_0244: Sama_0244 - heme exporter protein CcmB (RefSeq), at 268,044 to 268,730
_0244
Position (kb) 267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.106 kb on + strand, within Sama_0240 at 266.106 kb on + strand, within Sama_0240 at 266.113 kb on + strand, within Sama_0240 at 266.191 kb on - strand, within Sama_0240 at 266.191 kb on - strand, within Sama_0240 at 266.197 kb on - strand, within Sama_0240 at 266.197 kb on - strand, within Sama_0240 at 266.209 kb on + strand, within Sama_0240 at 266.209 kb on + strand, within Sama_0240 at 266.209 kb on + strand, within Sama_0240 at 266.209 kb on + strand, within Sama_0240 at 266.210 kb on - strand, within Sama_0240 at 266.210 kb on - strand, within Sama_0240 at 266.223 kb on + strand, within Sama_0240 at 266.224 kb on - strand, within Sama_0240 at 266.224 kb on - strand, within Sama_0240 at 266.245 kb on + strand, within Sama_0240 at 266.262 kb on + strand, within Sama_0240 at 266.278 kb on + strand, within Sama_0240 at 266.295 kb on - strand, within Sama_0240 at 266.295 kb on - strand, within Sama_0240 at 266.295 kb on - strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.336 kb on + strand, within Sama_0240 at 266.337 kb on - strand, within Sama_0240 at 266.410 kb on - strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.420 kb on + strand, within Sama_0240 at 266.421 kb on - strand, within Sama_0240 at 266.438 kb on + strand at 266.450 kb on + strand at 266.458 kb on + strand at 266.458 kb on + strand at 266.458 kb on + strand at 266.458 kb on + strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.459 kb on - strand at 266.460 kb on + strand at 266.461 kb on - strand at 266.461 kb on - strand at 266.461 kb on - strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.463 kb on + strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.464 kb on - strand at 266.467 kb on + strand at 266.467 kb on + strand at 266.467 kb on + strand at 266.468 kb on - strand at 266.468 kb on - strand at 266.494 kb on + strand at 266.512 kb on + strand at 266.512 kb on + strand at 266.512 kb on + strand at 266.512 kb on + strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.513 kb on - strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.560 kb on + strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.561 kb on - strand at 266.562 kb on + strand at 266.562 kb on + strand at 266.562 kb on + strand at 266.562 kb on + strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.563 kb on - strand at 266.640 kb on + strand at 266.640 kb on + strand at 266.640 kb on + strand at 266.641 kb on - strand at 266.642 kb on + strand at 266.642 kb on + strand at 266.643 kb on - strand at 266.643 kb on - strand at 266.643 kb on - strand at 266.665 kb on - strand, within Sama_0241 at 266.665 kb on - strand, within Sama_0241 at 266.696 kb on + strand, within Sama_0241 at 266.696 kb on + strand, within Sama_0241 at 266.740 kb on - strand, within Sama_0241 at 266.767 kb on + strand, within Sama_0241 at 266.768 kb on - strand, within Sama_0241 at 266.768 kb on - strand, within Sama_0241 at 266.768 kb on - strand, within Sama_0241 at 266.813 kb on + strand, within Sama_0241 at 266.813 kb on + strand, within Sama_0241 at 266.814 kb on - strand, within Sama_0241 at 266.814 kb on - strand, within Sama_0241 at 266.908 kb on - strand, within Sama_0241 at 266.914 kb on + strand, within Sama_0241 at 266.915 kb on - strand, within Sama_0241 at 266.922 kb on + strand, within Sama_0241 at 266.987 kb on + strand, within Sama_0241 at 266.997 kb on + strand, within Sama_0241 at 267.006 kb on + strand, within Sama_0241 at 267.006 kb on + strand, within Sama_0241 at 267.006 kb on + strand, within Sama_0241 at 267.007 kb on - strand, within Sama_0241 at 267.018 kb on - strand, within Sama_0241 at 267.018 kb on - strand, within Sama_0241 at 267.084 kb on + strand at 267.084 kb on + strand at 267.189 kb on - strand, within Sama_0242 at 267.215 kb on + strand, within Sama_0242 at 267.222 kb on - strand, within Sama_0242 at 267.230 kb on - strand, within Sama_0242 at 267.244 kb on + strand, within Sama_0242 at 267.244 kb on + strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.245 kb on - strand, within Sama_0242 at 267.254 kb on - strand, within Sama_0242 at 267.270 kb on - strand, within Sama_0242 at 267.270 kb on - strand, within Sama_0242 at 267.302 kb on - strand at 267.418 kb on + strand, within Sama_0243 at 267.418 kb on + strand, within Sama_0243 at 267.418 kb on + strand, within Sama_0243 at 267.435 kb on + strand, within Sama_0243 at 267.519 kb on + strand, within Sama_0243 at 267.520 kb on - strand, within Sama_0243 at 267.606 kb on + strand, within Sama_0243 at 267.606 kb on + strand, within Sama_0243 at 267.627 kb on + strand, within Sama_0243 at 267.784 kb on + strand, within Sama_0243 at 267.805 kb on + strand, within Sama_0243 at 267.806 kb on - strand, within Sama_0243 at 267.829 kb on + strand, within Sama_0243 at 267.829 kb on + strand, within Sama_0243 at 267.830 kb on - strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.831 kb on + strand, within Sama_0243 at 267.832 kb on - strand, within Sama_0243 at 267.832 kb on - strand, within Sama_0243 at 267.868 kb on + strand, within Sama_0243 at 267.900 kb on + strand, within Sama_0243 at 267.901 kb on - strand, within Sama_0243 at 267.901 kb on - strand, within Sama_0243 at 267.901 kb on - strand, within Sama_0243 at 267.946 kb on + strand, within Sama_0243 at 267.978 kb on - strand at 267.978 kb on - strand at 267.992 kb on + strand at 268.000 kb on - strand at 268.028 kb on + strand at 268.029 kb on - strand at 268.043 kb on - strand at 268.045 kb on + strand at 268.045 kb on + strand at 268.046 kb on - strand at 268.046 kb on - strand at 268.049 kb on + strand at 268.050 kb on - strand at 268.050 kb on - strand at 268.119 kb on + strand, within Sama_0244 at 268.119 kb on + strand, within Sama_0244 at 268.120 kb on - strand, within Sama_0244 at 268.120 kb on - strand, within Sama_0244 at 268.120 kb on - strand, within Sama_0244 at 268.122 kb on + strand, within Sama_0244 at 268.142 kb on - strand, within Sama_0244 at 268.142 kb on - strand, within Sama_0244 at 268.147 kb on - strand, within Sama_0244 at 268.201 kb on + strand, within Sama_0244 at 268.202 kb on - strand, within Sama_0244 at 268.202 kb on - strand, within Sama_0244 at 268.202 kb on - strand, within Sama_0244 at 268.212 kb on + strand, within Sama_0244 at 268.213 kb on - strand, within Sama_0244 at 268.215 kb on - strand, within Sama_0244 at 268.216 kb on - strand, within Sama_0244 at 268.231 kb on - strand, within Sama_0244 at 268.241 kb on + strand, within Sama_0244 at 268.242 kb on - strand, within Sama_0244 at 268.242 kb on - strand, within Sama_0244 at 268.245 kb on + strand, within Sama_0244 at 268.245 kb on + strand, within Sama_0244 at 268.245 kb on + strand, within Sama_0244 at 268.246 kb on - strand, within Sama_0244 at 268.246 kb on - strand, within Sama_0244 at 268.269 kb on + strand, within Sama_0244 at 268.269 kb on + strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244 at 268.270 kb on - strand, within Sama_0244
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 266,106 + Sama_0240 0.56 -2.1 266,106 + Sama_0240 0.56 -0.7 266,113 + Sama_0240 0.57 +1.0 266,191 - Sama_0240 0.65 +0.2 266,191 - Sama_0240 0.65 -0.2 266,197 - Sama_0240 0.66 -0.7 266,197 - Sama_0240 0.66 +1.0 266,209 + Sama_0240 0.67 -0.7 266,209 + Sama_0240 0.67 +1.8 266,209 + Sama_0240 0.67 -0.3 266,209 + Sama_0240 0.67 +0.4 266,210 - Sama_0240 0.67 -0.1 266,210 - Sama_0240 0.67 -0.1 266,223 + Sama_0240 0.68 -2.5 266,224 - Sama_0240 0.69 -1.1 266,224 - Sama_0240 0.69 +0.1 266,245 + Sama_0240 0.71 +0.0 266,262 + Sama_0240 0.72 -1.3 266,278 + Sama_0240 0.74 +1.8 266,295 - Sama_0240 0.76 -0.8 266,295 - Sama_0240 0.76 -1.6 266,295 - Sama_0240 0.76 +1.0 266,336 + Sama_0240 0.80 -0.2 266,336 + Sama_0240 0.80 +1.8 266,336 + Sama_0240 0.80 -1.0 266,336 + Sama_0240 0.80 -2.4 266,337 - Sama_0240 0.80 -0.5 266,410 - Sama_0240 0.88 -0.9 266,420 + Sama_0240 0.89 -0.2 266,420 + Sama_0240 0.89 -1.7 266,420 + Sama_0240 0.89 +0.3 266,420 + Sama_0240 0.89 +1.0 266,420 + Sama_0240 0.89 +0.8 266,421 - Sama_0240 0.89 -2.6 266,438 + -0.3 266,450 + -0.5 266,458 + -0.4 266,458 + +0.7 266,458 + +0.5 266,458 + +1.3 266,459 - -0.1 266,459 - +0.2 266,459 - -1.2 266,459 - -1.0 266,459 - +1.7 266,459 - +0.9 266,459 - -0.5 266,459 - -3.4 266,460 + -0.6 266,461 - +1.0 266,461 - -0.4 266,461 - -1.2 266,463 + -0.5 266,463 + -0.2 266,463 + -0.3 266,463 + -0.3 266,463 + +1.1 266,463 + -1.6 266,463 + +1.0 266,463 + -0.4 266,464 - -1.3 266,464 - +0.8 266,464 - +0.4 266,464 - -2.1 266,464 - +0.2 266,464 - -1.7 266,464 - -1.9 266,467 + +0.3 266,467 + -0.5 266,467 + -0.2 266,468 - -0.4 266,468 - -0.2 266,494 + +0.5 266,512 + +0.6 266,512 + -0.5 266,512 + -0.5 266,512 + +0.8 266,513 - -2.5 266,513 - -1.2 266,513 - -1.6 266,513 - +0.4 266,513 - +1.1 266,513 - -0.1 266,560 + -0.7 266,560 + -0.2 266,560 + -0.7 266,560 + +0.8 266,560 + +0.0 266,560 + -1.0 266,560 + -0.7 266,560 + -0.5 266,560 + -0.1 266,560 + -0.5 266,560 + +0.5 266,560 + +0.6 266,561 - +0.3 266,561 - +0.7 266,561 - -1.3 266,561 - +0.3 266,561 - +0.1 266,561 - +0.1 266,561 - +0.3 266,561 - -0.2 266,561 - -0.7 266,561 - +0.8 266,561 - -2.1 266,562 + +1.1 266,562 + -1.8 266,562 + +0.8 266,562 + +0.1 266,563 - +0.3 266,563 - -0.5 266,563 - +0.4 266,563 - +0.2 266,563 - -0.5 266,563 - +1.1 266,563 - -0.2 266,640 + -0.3 266,640 + -1.3 266,640 + -0.5 266,641 - -1.7 266,642 + -1.7 266,642 + -2.2 266,643 - +0.1 266,643 - -1.2 266,643 - -0.5 266,665 - Sama_0241 0.11 -0.2 266,665 - Sama_0241 0.11 -1.9 266,696 + Sama_0241 0.17 -0.5 266,696 + Sama_0241 0.17 -2.2 266,740 - Sama_0241 0.26 -1.5 266,767 + Sama_0241 0.32 -1.2 266,768 - Sama_0241 0.32 -0.7 266,768 - Sama_0241 0.32 -1.2 266,768 - Sama_0241 0.32 -0.2 266,813 + Sama_0241 0.41 -0.7 266,813 + Sama_0241 0.41 -1.5 266,814 - Sama_0241 0.42 -0.7 266,814 - Sama_0241 0.42 -2.0 266,908 - Sama_0241 0.61 -0.5 266,914 + Sama_0241 0.62 -0.7 266,915 - Sama_0241 0.62 -1.0 266,922 + Sama_0241 0.64 -0.2 266,987 + Sama_0241 0.77 -1.7 266,997 + Sama_0241 0.79 +0.8 267,006 + Sama_0241 0.81 -1.3 267,006 + Sama_0241 0.81 -0.2 267,006 + Sama_0241 0.81 -1.5 267,007 - Sama_0241 0.81 -0.2 267,018 - Sama_0241 0.83 -0.3 267,018 - Sama_0241 0.83 +0.3 267,084 + -1.0 267,084 + -0.7 267,189 - Sama_0242 0.46 -2.1 267,215 + Sama_0242 0.59 -0.2 267,222 - Sama_0242 0.63 -3.0 267,230 - Sama_0242 0.67 -0.5 267,244 + Sama_0242 0.74 -1.6 267,244 + Sama_0242 0.74 -1.0 267,245 - Sama_0242 0.74 -1.9 267,245 - Sama_0242 0.74 -1.2 267,245 - Sama_0242 0.74 -1.9 267,245 - Sama_0242 0.74 +0.8 267,245 - Sama_0242 0.74 -1.0 267,254 - Sama_0242 0.79 -1.7 267,270 - Sama_0242 0.87 -0.5 267,270 - Sama_0242 0.87 -0.7 267,302 - -1.0 267,418 + Sama_0243 0.16 +0.3 267,418 + Sama_0243 0.16 -1.3 267,418 + Sama_0243 0.16 -1.2 267,435 + Sama_0243 0.19 +0.3 267,519 + Sama_0243 0.30 -1.5 267,520 - Sama_0243 0.30 -1.3 267,606 + Sama_0243 0.41 -2.1 267,606 + Sama_0243 0.41 +1.7 267,627 + Sama_0243 0.44 -1.2 267,784 + Sama_0243 0.65 -0.7 267,805 + Sama_0243 0.68 -1.2 267,806 - Sama_0243 0.68 -1.5 267,829 + Sama_0243 0.71 -1.0 267,829 + Sama_0243 0.71 +0.8 267,830 - Sama_0243 0.71 +0.0 267,831 + Sama_0243 0.72 -0.7 267,831 + Sama_0243 0.72 -0.2 267,831 + Sama_0243 0.72 -0.5 267,831 + Sama_0243 0.72 -0.5 267,831 + Sama_0243 0.72 -1.0 267,831 + Sama_0243 0.72 -0.2 267,831 + Sama_0243 0.72 -0.5 267,832 - Sama_0243 0.72 -0.5 267,832 - Sama_0243 0.72 -0.5 267,868 + Sama_0243 0.77 -1.0 267,900 + Sama_0243 0.81 -1.0 267,901 - Sama_0243 0.81 -0.5 267,901 - Sama_0243 0.81 -2.2 267,901 - Sama_0243 0.81 -0.5 267,946 + Sama_0243 0.87 -1.3 267,978 - -0.5 267,978 - -1.2 267,992 + -1.0 268,000 - -2.0 268,028 + -0.2 268,029 - -0.5 268,043 - -1.2 268,045 + -0.5 268,045 + -2.1 268,046 - -1.0 268,046 - -2.2 268,049 + -0.2 268,050 - -1.6 268,050 - -1.3 268,119 + Sama_0244 0.11 +0.0 268,119 + Sama_0244 0.11 -0.2 268,120 - Sama_0244 0.11 -1.0 268,120 - Sama_0244 0.11 -0.2 268,120 - Sama_0244 0.11 +0.6 268,122 + Sama_0244 0.11 -0.2 268,142 - Sama_0244 0.14 -0.7 268,142 - Sama_0244 0.14 +1.8 268,147 - Sama_0244 0.15 +0.3 268,201 + Sama_0244 0.23 -1.2 268,202 - Sama_0244 0.23 -1.0 268,202 - Sama_0244 0.23 -1.5 268,202 - Sama_0244 0.23 -1.6 268,212 + Sama_0244 0.24 -1.2 268,213 - Sama_0244 0.25 -0.5 268,215 - Sama_0244 0.25 -0.7 268,216 - Sama_0244 0.25 -1.0 268,231 - Sama_0244 0.27 -0.7 268,241 + Sama_0244 0.29 -1.0 268,242 - Sama_0244 0.29 -0.2 268,242 - Sama_0244 0.29 -1.0 268,245 + Sama_0244 0.29 +0.8 268,245 + Sama_0244 0.29 -1.2 268,245 + Sama_0244 0.29 +0.3 268,246 - Sama_0244 0.29 -0.7 268,246 - Sama_0244 0.29 -1.3 268,269 + Sama_0244 0.33 +0.3 268,269 + Sama_0244 0.33 -0.2 268,270 - Sama_0244 0.33 -0.5 268,270 - Sama_0244 0.33 -0.7 268,270 - Sama_0244 0.33 -1.2 268,270 - Sama_0244 0.33 -1.2 268,270 - Sama_0244 0.33 -2.4
Or see this region's nucleotide sequence