Strain Fitness in Shewanella amazonensis SB2B around Sama_0173

Experiment: Paraquat dichloride 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0171 and Sama_0172 are separated by 37 nucleotidesSama_0172 and Sama_0173 are separated by 12 nucleotidesSama_0173 and Sama_0174 are separated by 22 nucleotidesSama_0174 and Sama_0175 overlap by 20 nucleotides Sama_0171: Sama_0171 - general secretion pathway protein F (RefSeq), at 201,935 to 203,158 _0171 Sama_0172: Sama_0172 - general secretion pathway protein G (RefSeq), at 203,196 to 203,627 _0172 Sama_0173: Sama_0173 - general secretion pathway protein H (RefSeq), at 203,640 to 204,209 _0173 Sama_0174: Sama_0174 - general secretion pathway protein I (RefSeq), at 204,232 to 204,597 _0174 Sama_0175: Sama_0175 - general secretion pathway protein J (RefSeq), at 204,578 to 205,357 _0175 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 202.843 kb on - strand, within Sama_0171at 202.946 kb on + strand, within Sama_0171at 202.946 kb on + strand, within Sama_0171at 202.947 kb on - strand, within Sama_0171at 202.949 kb on - strand, within Sama_0171at 203.101 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.156 kb on + strandat 203.160 kb on + strandat 203.160 kb on + strandat 203.160 kb on + strandat 203.178 kb on + strandat 203.178 kb on + strandat 203.178 kb on + strandat 203.179 kb on - strandat 203.419 kb on + strand, within Sama_0172at 203.453 kb on + strand, within Sama_0172at 203.512 kb on - strand, within Sama_0172at 203.571 kb on - strand, within Sama_0172at 203.594 kb on + strandat 203.620 kb on - strandat 203.625 kb on + strandat 203.625 kb on + strandat 203.625 kb on + strandat 203.626 kb on - strandat 203.665 kb on + strandat 203.687 kb on - strandat 203.849 kb on + strand, within Sama_0173at 203.850 kb on - strand, within Sama_0173at 203.853 kb on + strand, within Sama_0173at 203.854 kb on - strand, within Sama_0173at 203.859 kb on + strand, within Sama_0173at 203.860 kb on - strand, within Sama_0173at 203.868 kb on + strand, within Sama_0173at 203.942 kb on + strand, within Sama_0173at 204.015 kb on - strand, within Sama_0173at 204.070 kb on + strand, within Sama_0173at 204.208 kb on - strandat 204.316 kb on - strand, within Sama_0174at 204.462 kb on + strand, within Sama_0174at 204.504 kb on + strand, within Sama_0174at 204.547 kb on + strand, within Sama_0174at 204.578 kb on - strandat 204.585 kb on + strandat 204.595 kb on + strandat 204.980 kb on + strand, within Sama_0175at 205.078 kb on + strand, within Sama_0175at 205.079 kb on - strand, within Sama_0175at 205.079 kb on - strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.189 kb on + strand, within Sama_0175at 205.190 kb on - strand, within Sama_0175at 205.190 kb on - strand, within Sama_0175at 205.190 kb on - strand, within Sama_0175

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml
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202,843 - Sama_0171 0.74 -0.5
202,946 + Sama_0171 0.83 +0.8
202,946 + Sama_0171 0.83 +0.3
202,947 - Sama_0171 0.83 -0.2
202,949 - Sama_0171 0.83 -1.3
203,101 + -0.5
203,156 + +2.7
203,156 + +0.3
203,156 + -1.6
203,156 + -0.5
203,156 + -0.3
203,156 + +0.8
203,160 + +1.6
203,160 + +0.5
203,160 + -1.2
203,178 + +0.2
203,178 + -1.1
203,178 + -0.6
203,179 - -0.5
203,419 + Sama_0172 0.52 -0.7
203,453 + Sama_0172 0.59 -1.0
203,512 - Sama_0172 0.73 -0.2
203,571 - Sama_0172 0.87 -0.5
203,594 + -0.7
203,620 - -0.2
203,625 + -0.1
203,625 + -0.2
203,625 + +0.5
203,626 - +0.8
203,665 + -0.5
203,687 - -0.7
203,849 + Sama_0173 0.37 -1.0
203,850 - Sama_0173 0.37 -0.7
203,853 + Sama_0173 0.37 -0.2
203,854 - Sama_0173 0.38 +0.8
203,859 + Sama_0173 0.38 -0.2
203,860 - Sama_0173 0.39 -0.5
203,868 + Sama_0173 0.40 -0.2
203,942 + Sama_0173 0.53 -1.7
204,015 - Sama_0173 0.66 +0.3
204,070 + Sama_0173 0.75 -0.7
204,208 - -0.5
204,316 - Sama_0174 0.23 -1.3
204,462 + Sama_0174 0.63 +0.8
204,504 + Sama_0174 0.74 -1.0
204,547 + Sama_0174 0.86 +1.8
204,578 - -0.5
204,585 + -2.2
204,595 + -0.3
204,980 + Sama_0175 0.52 +0.3
205,078 + Sama_0175 0.64 -1.2
205,079 - Sama_0175 0.64 -0.2
205,079 - Sama_0175 0.64 +0.3
205,189 + Sama_0175 0.78 -1.2
205,189 + Sama_0175 0.78 -2.4
205,189 + Sama_0175 0.78 +0.7
205,189 + Sama_0175 0.78 +0.2
205,189 + Sama_0175 0.78 -1.3
205,189 + Sama_0175 0.78 -1.2
205,189 + Sama_0175 0.78 -0.2
205,190 - Sama_0175 0.78 +0.6
205,190 - Sama_0175 0.78 -1.2
205,190 - Sama_0175 0.78 -0.7

Or see this region's nucleotide sequence