Strain Fitness in Shewanella amazonensis SB2B around Sama_0104

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
116,333	+		Sama_0103	0.17	-1.4
116,333	+		Sama_0103	0.17	-2.9
116,333	+		Sama_0103	0.17	-1.3
116,333	+		Sama_0103	0.17	-2.2
116,540	-		Sama_0103	0.35	-1.5
116,583	+		Sama_0103	0.39	-1.7
116,629	+		Sama_0103	0.44	+0.9
116,647	+		Sama_0103	0.45	-2.8
116,665	+		Sama_0103	0.47	-1.9
116,665	+		Sama_0103	0.47	-2.3
116,665	+		Sama_0103	0.47	-2.5
116,666	-		Sama_0103	0.47	-2.2
116,666	-		Sama_0103	0.47	-1.1
116,723	+		Sama_0103	0.52	-1.5
116,724	-		Sama_0103	0.52	+0.9
116,724	-		Sama_0103	0.52	-1.8
116,776	+		Sama_0103	0.57	-0.1
116,776	+		Sama_0103	0.57	-1.7
116,776	+		Sama_0103	0.57	-3.3
116,776	+		Sama_0103	0.57	-0.5
116,776	+		Sama_0103	0.57	-3.2
116,831	+		Sama_0103	0.62	-1.4
116,831	+		Sama_0103	0.62	-2.1
116,831	+		Sama_0103	0.62	-2.3
116,831	+		Sama_0103	0.62	-1.6
116,832	-		Sama_0103	0.62	-0.7
116,832	-		Sama_0103	0.62	-2.1
116,832	-		Sama_0103	0.62	-2.5
116,877	-		Sama_0103	0.66	-3.3
116,932	+		Sama_0103	0.71	-1.6
116,933	-		Sama_0103	0.71	-0.1
116,942	-		Sama_0103	0.72	-2.8
116,944	+		Sama_0103	0.72	-0.9
116,944	+		Sama_0103	0.72	-2.5
116,989	+		Sama_0103	0.76	-1.7
117,217	+				-0.9
117,217	+				-1.4
117,223	+				-0.9
117,223	+				+1.5
117,224	-				-2.3
117,359	+		Sama_0104	0.10	-1.0
117,359	+		Sama_0104	0.10	-2.4
117,359	+		Sama_0104	0.10	+0.5
117,359	+		Sama_0104	0.10	-2.6
117,359	+		Sama_0104	0.10	-1.5
117,359	+		Sama_0104	0.10	-1.5
117,359	+		Sama_0104	0.10	+0.7
117,359	+		Sama_0104	0.10	-1.3
117,359	+		Sama_0104	0.10	+1.5
117,359	+		Sama_0104	0.10	-1.9
117,359	+		Sama_0104	0.10	-1.3
117,359	+		Sama_0104	0.10	-0.5
117,359	+		Sama_0104	0.10	-0.9
117,359	+		Sama_0104	0.10	-1.5
117,360	-		Sama_0104	0.10	-1.8
117,360	-		Sama_0104	0.10	-1.8
117,360	-		Sama_0104	0.10	-2.2
117,360	-		Sama_0104	0.10	-1.0
117,360	-		Sama_0104	0.10	-0.7
117,360	-		Sama_0104	0.10	-4.0
117,360	-		Sama_0104	0.10	-2.7
117,360	-		Sama_0104	0.10	-1.3
117,441	+		Sama_0104	0.18	-1.5
117,441	+		Sama_0104	0.18	-1.1
117,482	+		Sama_0104	0.21	-1.8
117,482	+		Sama_0104	0.21	-2.1
117,482	+		Sama_0104	0.21	-2.8
117,494	+		Sama_0104	0.22	-0.2
117,592	+		Sama_0104	0.31	-2.5
117,639	+		Sama_0104	0.36	-2.5
117,639	+		Sama_0104	0.36	-1.7
117,639	+		Sama_0104	0.36	-3.0
117,639	+		Sama_0104	0.36	+0.5
117,639	+		Sama_0104	0.36	-2.4
117,639	+		Sama_0104	0.36	-2.1
117,639	+		Sama_0104	0.36	-1.1
117,640	-		Sama_0104	0.36	-1.0
117,640	-		Sama_0104	0.36	-1.7
117,666	+		Sama_0104	0.38	-0.9
117,713	+		Sama_0104	0.42	-1.8
117,713	+		Sama_0104	0.42	-2.3
117,714	-		Sama_0104	0.43	-0.1
117,781	+		Sama_0104	0.49	-3.1
117,781	+		Sama_0104	0.49	-1.7
117,781	+		Sama_0104	0.49	-1.7
117,781	+		Sama_0104	0.49	-3.0
117,782	-		Sama_0104	0.49	+0.3
117,783	+		Sama_0104	0.49	-2.7
117,784	-		Sama_0104	0.49	-1.3
117,853	+		Sama_0104	0.55	-4.1
117,853	+		Sama_0104	0.55	-0.7
117,853	+		Sama_0104	0.55	-1.6
117,853	+		Sama_0104	0.55	-0.3
117,853	+		Sama_0104	0.55	-0.8
117,854	-		Sama_0104	0.55	-3.5
117,854	-		Sama_0104	0.55	-2.2
117,854	-		Sama_0104	0.55	-2.3
117,854	-		Sama_0104	0.55	-2.2
117,854	-		Sama_0104	0.55	-0.5
117,854	-		Sama_0104	0.55	-3.7
117,854	-		Sama_0104	0.55	-3.6
118,014	+		Sama_0104	0.70	-0.9
118,050	-		Sama_0104	0.73	-1.6
118,050	-		Sama_0104	0.73	-0.5
118,050	-		Sama_0104	0.73	-1.9
118,050	-		Sama_0104	0.73	-1.5
118,084	+		Sama_0104	0.76	+0.3
118,084	+		Sama_0104	0.76	-1.1
118,259	-				-0.9
118,259	-				-1.8
118,364	-				+1.6
118,365	+				+0.7
118,365	+				-0.4
118,365	+				+1.0
118,365	+				-0.9
118,365	+				-0.5
118,365	+				-0.2
118,365	+				+0.5
118,365	+				-0.5
118,366	-				-0.9
118,366	-				-0.0
118,366	-				+1.5
118,366	-				+0.2
118,366	-				-2.7
118,366	-				-0.6
118,367	+				+2.1
118,367	+				+0.8
118,368	-				-0.1
118,368	-				-0.0
118,371	-				-0.4
118,453	+				-2.1
118,454	-				-2.0
118,454	-				-1.0
118,490	+				-0.8
118,491	-				-0.5
118,491	-				-0.9
118,491	-				-2.0
118,506	+		Sama_0105	0.11	-1.7
118,506	+		Sama_0105	0.11	-2.7
118,507	-		Sama_0105	0.11	-0.3
118,585	+		Sama_0105	0.19	-1.5
118,586	-		Sama_0105	0.19	-0.1
118,648	+		Sama_0105	0.25	-1.5
118,648	+		Sama_0105	0.25	-1.6
118,747	-		Sama_0105	0.35	-0.9
118,771	+		Sama_0105	0.38	-2.5
118,772	-		Sama_0105	0.38	-0.7
118,772	-		Sama_0105	0.38	-1.1
118,772	-		Sama_0105	0.38	+1.5
118,772	-		Sama_0105	0.38	-1.8
118,788	+		Sama_0105	0.40	-2.5
118,788	+		Sama_0105	0.40	-2.6
118,841	+		Sama_0105	0.45	-1.1
118,841	+		Sama_0105	0.45	-2.3
118,841	+		Sama_0105	0.45	-2.2
118,841	+		Sama_0105	0.45	-3.0
118,841	+		Sama_0105	0.45	-2.9
118,841	+		Sama_0105	0.45	-0.7
118,841	+		Sama_0105	0.45	-1.9
118,841	+		Sama_0105	0.45	-1.2
118,841	+		Sama_0105	0.45	-1.7
118,842	-		Sama_0105	0.45	-1.1
118,842	-		Sama_0105	0.45	-1.6
118,842	-		Sama_0105	0.45	-1.6
118,842	-		Sama_0105	0.45	-2.4
118,842	-		Sama_0105	0.45	-2.0
118,842	-		Sama_0105	0.45	-2.3
118,842	-		Sama_0105	0.45	-1.6
118,842	-		Sama_0105	0.45	+1.3
118,842	-		Sama_0105	0.45	-1.7
118,926	+		Sama_0105	0.54	-0.7
118,938	+		Sama_0105	0.55	-0.5
118,938	+		Sama_0105	0.55	-3.7
118,938	+		Sama_0105	0.55	+0.7
118,939	-		Sama_0105	0.55	+0.3
118,939	-		Sama_0105	0.55	-0.5
118,939	-		Sama_0105	0.55	-1.5
118,945	+		Sama_0105	0.56	-0.8
118,945	+		Sama_0105	0.56	+0.5
118,946	-		Sama_0105	0.56	-1.6
118,949	+		Sama_0105	0.56	-1.3
118,949	+		Sama_0105	0.56	-3.6
118,952	+		Sama_0105	0.56	-1.3
118,953	-		Sama_0105	0.57	-2.2
118,953	-		Sama_0105	0.57	+0.9
118,953	-		Sama_0105	0.57	-2.1
119,037	+		Sama_0105	0.65	-0.8
119,038	-		Sama_0105	0.65	-0.7
119,038	-		Sama_0105	0.65	-1.9
119,041	+		Sama_0105	0.66	-0.5
119,042	-		Sama_0105	0.66	-2.7
119,042	-		Sama_0105	0.66	-0.1
119,042	-		Sama_0105	0.66	-1.9
119,042	-		Sama_0105	0.66	-1.6
119,075	+		Sama_0105	0.69	-2.4
119,099	-		Sama_0105	0.71	-2.2
119,099	-		Sama_0105	0.71	-0.9
119,099	-		Sama_0105	0.71	-2.2
119,099	-		Sama_0105	0.71	+1.9
119,105	+		Sama_0105	0.72	-0.7
119,105	+		Sama_0105	0.72	+0.4
119,105	+		Sama_0105	0.72	-2.9
119,105	+		Sama_0105	0.72	-0.3
119,106	-		Sama_0105	0.72	-1.1
119,106	-		Sama_0105	0.72	-0.8
119,116	+		Sama_0105	0.73	-0.9
119,151	+		Sama_0105	0.77	-0.9
119,151	+		Sama_0105	0.77	-0.7
119,151	+		Sama_0105	0.77	-1.4
119,151	+		Sama_0105	0.77	-1.6
119,151	+		Sama_0105	0.77	-1.5
119,151	+		Sama_0105	0.77	-2.4
119,151	+		Sama_0105	0.77	-0.4
119,152	-		Sama_0105	0.77	-2.3
119,152	-		Sama_0105	0.77	-0.1
119,152	-		Sama_0105	0.77	-3.6
119,152	-		Sama_0105	0.77	-0.6
119,152	-		Sama_0105	0.77	-2.2
119,152	-		Sama_0105	0.77	+0.3
119,152	-		Sama_0105	0.77	-0.6
119,152	-		Sama_0105	0.77	-1.9
119,152	-		Sama_0105	0.77	-0.5
119,152	-		Sama_0105	0.77	-1.4
119,233	+		Sama_0105	0.85	-1.5
119,233	+		Sama_0105	0.85	-0.5
119,234	-		Sama_0105	0.85	-0.9
119,234	-		Sama_0105	0.85	-0.5
119,240	+		Sama_0105	0.86	-2.7
119,240	+		Sama_0105	0.86	-1.1
119,240	+		Sama_0105	0.86	-1.5
119,240	+		Sama_0105	0.86	-1.1
119,240	+		Sama_0105	0.86	-1.4
119,240	+		Sama_0105	0.86	-1.8
119,240	+		Sama_0105	0.86	-0.3
119,240	+		Sama_0105	0.86	-0.9
119,240	+		Sama_0105	0.86	-2.9
119,241	-		Sama_0105	0.86	-1.6
119,241	-		Sama_0105	0.86	-1.5
119,241	-		Sama_0105	0.86	-1.2
119,241	-		Sama_0105	0.86	-1.9
119,241	-		Sama_0105	0.86	-4.2
119,241	-		Sama_0105	0.86	+0.1
119,241	-		Sama_0105	0.86	-2.3
119,241	-		Sama_0105	0.86	-1.5
119,241	-		Sama_0105	0.86	-2.7
119,241	-		Sama_0105	0.86	+0.2
119,241	-		Sama_0105	0.86	-1.7
119,241	-		Sama_0105	0.86	-0.1
119,246	-		Sama_0105	0.87	-2.2
119,258	+		Sama_0105	0.88	-2.7
119,258	+		Sama_0105	0.88	-2.4
119,259	-		Sama_0105	0.88	-2.0
119,259	-		Sama_0105	0.88	+0.3
119,275	+		Sama_0105	0.89	+0.7
119,276	-		Sama_0105	0.90	-0.7
119,276	-		Sama_0105	0.90	-2.0
119,322	+				-2.5
119,323	-				-1.4
119,342	+				-1.1