Strain Fitness in Shewanella amazonensis SB2B around Sama_0072

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
76,958	+				-1.5
76,959	-				-0.2
76,983	+				-2.0
76,983	+				-2.6
76,983	+				-0.5
76,983	+				-1.1
76,983	+				-1.0
76,983	+				+0.5
76,984	-				+0.4
76,984	-				-0.9
76,984	-				+0.8
76,991	+				-0.3
76,992	-				-0.3
76,992	-				-0.9
76,992	-				-0.3
77,041	+				-1.3
77,042	-				-1.3
77,042	-				-1.3
77,106	+		Sama_0070	0.11	+0.8
77,120	+		Sama_0070	0.13	+1.3
77,121	-		Sama_0070	0.13	-0.7
77,168	+		Sama_0070	0.21	+1.2
77,200	+		Sama_0070	0.27	+1.9
77,200	+		Sama_0070	0.27	+0.5
77,201	-		Sama_0070	0.27	-0.4
77,201	-		Sama_0070	0.27	-0.1
77,300	+		Sama_0070	0.44	-0.1
77,372	+		Sama_0070	0.56	-0.7
77,436	+		Sama_0070	0.67	-1.5
77,436	+		Sama_0070	0.67	+0.0
77,436	+		Sama_0070	0.67	+0.3
77,436	+		Sama_0070	0.67	-0.1
77,436	+		Sama_0070	0.67	-1.3
77,436	+		Sama_0070	0.67	+0.3
77,442	+		Sama_0070	0.68	-0.6
77,442	+		Sama_0070	0.68	-0.6
77,442	+		Sama_0070	0.68	-0.1
77,442	+		Sama_0070	0.68	-0.3
77,442	+		Sama_0070	0.68	+1.3
77,442	+		Sama_0070	0.68	-0.2
77,442	+		Sama_0070	0.68	-0.4
77,442	+		Sama_0070	0.68	+0.6
77,443	-		Sama_0070	0.68	+0.2
77,443	-		Sama_0070	0.68	+0.2
77,443	-		Sama_0070	0.68	-0.0
77,443	-		Sama_0070	0.68	-0.5
77,443	-		Sama_0070	0.68	-0.1
77,443	-		Sama_0070	0.68	+0.7
77,443	-		Sama_0070	0.68	-0.8
77,443	-		Sama_0070	0.68	+1.1
77,456	-		Sama_0070	0.70	+0.3
77,456	-		Sama_0070	0.70	-0.8
77,505	+		Sama_0070	0.79	-0.9
77,506	-		Sama_0070	0.79	-0.5
77,506	-		Sama_0070	0.79	-0.9
77,555	+		Sama_0070	0.87	-0.8
77,555	+		Sama_0070	0.87	-1.9
77,555	+		Sama_0070	0.87	-0.2
77,556	-		Sama_0070	0.87	+1.3
77,556	-		Sama_0070	0.87	-1.9
77,622	+				-0.1
77,622	+				-0.8
77,622	+				-0.0
77,622	+				-0.1
77,623	-				-0.0
77,623	-				+0.4
77,623	-				-0.5
77,623	-				+1.2
77,623	-				-0.5
77,623	-				-1.1
77,655	+				+0.1
77,655	+				-2.0
77,656	-				+0.5
77,673	+				+0.5
77,673	+				+0.3
77,673	+				+0.9
77,673	+				+0.3
77,673	+				-0.5
77,674	-				-3.2
77,674	-				-1.4
77,674	-				-0.0
77,797	+		Sama_0071	0.60	+0.5
77,797	+		Sama_0071	0.60	-0.5
77,797	+		Sama_0071	0.60	-2.0
77,798	-		Sama_0071	0.60	-0.5
77,798	-		Sama_0071	0.60	-2.6
77,798	-		Sama_0071	0.60	-0.0
77,817	+		Sama_0071	0.68	-2.5
77,818	-		Sama_0071	0.68	-2.7
77,818	-		Sama_0071	0.68	+0.9
77,818	-		Sama_0071	0.68	+0.5
77,852	+		Sama_0071	0.82	-0.9
77,853	-		Sama_0071	0.83	+0.3
77,853	-		Sama_0071	0.83	-0.3
77,853	-		Sama_0071	0.83	+0.3
77,858	+		Sama_0071	0.85	-0.7
77,858	+		Sama_0071	0.85	-1.8
77,858	+		Sama_0071	0.85	-0.8
77,872	+				+0.7
77,873	-				+0.3
77,873	-				+0.8
77,873	-				+1.4
77,890	-				+1.5
77,896	+				-0.5
77,896	+				-2.4
77,896	+				-1.4
77,896	+				-0.1
77,896	+				+0.1
77,896	+				+0.3
77,897	-				+0.1
77,897	-				-0.1
77,897	-				-1.4
77,897	-				-0.1
77,906	+				-0.9
77,906	+				-0.6
77,906	+				-3.8
77,906	+				+1.3
77,906	+				+1.3
77,907	-				-0.1
77,907	-				-0.4
77,909	+				+0.0
77,909	+				+1.0
77,909	+				-0.4
77,909	+				+0.3
77,910	-				-0.5
77,910	-				-0.9
77,933	+				-0.6
77,934	-				-0.7
77,934	-				-0.4
77,934	-				-1.0
77,934	-				-1.3
77,934	-				-1.0
77,934	-				-1.2
77,935	+				-0.8
77,936	-				+0.9
77,936	-				+0.6
77,936	-				+0.2
78,123	+	pbpG	Sama_0072	0.25	-1.0
78,169	+	pbpG	Sama_0072	0.30	-1.3
78,170	-	pbpG	Sama_0072	0.30	-0.6
78,184	+	pbpG	Sama_0072	0.32	-1.8
78,184	+	pbpG	Sama_0072	0.32	-0.3
78,184	+	pbpG	Sama_0072	0.32	-0.1
78,184	+	pbpG	Sama_0072	0.32	-0.3
78,185	-	pbpG	Sama_0072	0.32	-1.1
78,185	-	pbpG	Sama_0072	0.32	+0.7
78,212	+	pbpG	Sama_0072	0.35	-1.8
78,212	+	pbpG	Sama_0072	0.35	+0.2
78,212	+	pbpG	Sama_0072	0.35	+0.4
78,213	-	pbpG	Sama_0072	0.35	-1.1
78,213	-	pbpG	Sama_0072	0.35	+0.0
78,213	-	pbpG	Sama_0072	0.35	-0.8
78,213	-	pbpG	Sama_0072	0.35	-1.2
78,213	-	pbpG	Sama_0072	0.35	+0.2
78,213	-	pbpG	Sama_0072	0.35	-0.7
78,213	-	pbpG	Sama_0072	0.35	-0.5
78,213	-	pbpG	Sama_0072	0.35	-1.2
78,213	-	pbpG	Sama_0072	0.35	-1.5
78,213	-	pbpG	Sama_0072	0.35	+0.8
78,240	+	pbpG	Sama_0072	0.38	+0.3
78,247	+	pbpG	Sama_0072	0.39	-1.3
78,248	-	pbpG	Sama_0072	0.39	-0.2
78,290	+	pbpG	Sama_0072	0.43	-0.3
78,303	+	pbpG	Sama_0072	0.45	+0.3
78,344	+	pbpG	Sama_0072	0.49	-0.0
78,391	+	pbpG	Sama_0072	0.54	-1.7
78,392	-	pbpG	Sama_0072	0.54	+0.2
78,617	+	pbpG	Sama_0072	0.79	+0.3
78,617	+	pbpG	Sama_0072	0.79	+0.4
78,617	+	pbpG	Sama_0072	0.79	+1.6
78,618	-	pbpG	Sama_0072	0.79	-1.3
78,638	+	pbpG	Sama_0072	0.81	-1.0
78,638	+	pbpG	Sama_0072	0.81	-0.1
78,646	-	pbpG	Sama_0072	0.82	+0.5
78,646	+	pbpG	Sama_0072	0.82	+0.5
78,647	-	pbpG	Sama_0072	0.82	-0.1
78,647	-	pbpG	Sama_0072	0.82	-1.2
78,647	-	pbpG	Sama_0072	0.82	+0.9
78,647	-	pbpG	Sama_0072	0.82	+0.3
78,688	+	pbpG	Sama_0072	0.87	+1.1
78,688	+	pbpG	Sama_0072	0.87	-1.1
78,688	+	pbpG	Sama_0072	0.87	-0.4
78,689	-	pbpG	Sama_0072	0.87	+0.3
78,689	-	pbpG	Sama_0072	0.87	-0.3
78,689	-	pbpG	Sama_0072	0.87	-0.6
78,689	-	pbpG	Sama_0072	0.87	-1.7
78,689	-	pbpG	Sama_0072	0.87	+1.4
78,784	+				-3.8
78,784	+				-0.2
78,785	-				-0.3
78,785	-				+0.7
78,822	+				-0.7
78,822	+				+0.5
78,823	-				+0.4
78,823	-				-0.4
78,856	+				-0.7
78,867	+				-0.9
78,867	+				-0.2
78,867	+				+0.5
78,867	+				+0.2
78,867	+				+0.9
78,868	-				-0.4
78,868	-				-0.3
79,033	+		Sama_0073	0.32	+0.6
79,040	+		Sama_0073	0.33	-2.3
79,041	-		Sama_0073	0.34	+1.1
79,041	-		Sama_0073	0.34	+0.0
79,050	+		Sama_0073	0.36	+3.2
79,050	+		Sama_0073	0.36	+0.4
79,051	-		Sama_0073	0.36	-1.2
79,066	+		Sama_0073	0.39	+0.5
79,066	+		Sama_0073	0.39	-0.2
79,066	+		Sama_0073	0.39	-0.2
79,066	+		Sama_0073	0.39	-0.9
79,066	+		Sama_0073	0.39	+1.0
79,066	+		Sama_0073	0.39	+0.7
79,066	+		Sama_0073	0.39	+1.1
79,066	+		Sama_0073	0.39	+1.1
79,066	+		Sama_0073	0.39	-0.1
79,066	+		Sama_0073	0.39	+0.0
79,066	+		Sama_0073	0.39	+0.5
79,067	-		Sama_0073	0.40	-0.6
79,067	-		Sama_0073	0.40	+2.7
79,067	-		Sama_0073	0.40	+0.5
79,067	-		Sama_0073	0.40	-0.6
79,067	-		Sama_0073	0.40	+0.8
79,069	-		Sama_0073	0.40	-0.9
79,069	-		Sama_0073	0.40	+0.4
79,106	+		Sama_0073	0.49	-2.1
79,107	-		Sama_0073	0.49	-0.7
79,124	+		Sama_0073	0.53	-1.8
79,124	+		Sama_0073	0.53	-0.3
79,124	+		Sama_0073	0.53	+2.5
79,124	+		Sama_0073	0.53	+1.3
79,124	+		Sama_0073	0.53	+0.1
79,124	+		Sama_0073	0.53	-0.1
79,125	-		Sama_0073	0.53	+0.2
79,125	-		Sama_0073	0.53	+0.4
79,125	-		Sama_0073	0.53	-1.7
79,125	-		Sama_0073	0.53	-0.9
79,168	+		Sama_0073	0.63	-1.1
79,169	+		Sama_0073	0.63	-0.4
79,169	+		Sama_0073	0.63	-0.1
79,169	+		Sama_0073	0.63	+2.9
79,169	+		Sama_0073	0.63	-2.5
79,169	+		Sama_0073	0.63	-0.7
79,169	+		Sama_0073	0.63	-1.9
79,169	+		Sama_0073	0.63	-1.5
79,169	+		Sama_0073	0.63	+0.3
79,169	+		Sama_0073	0.63	+0.5
79,169	+		Sama_0073	0.63	-1.1
79,169	+		Sama_0073	0.63	-0.4
79,170	-		Sama_0073	0.63	+1.0
79,170	-		Sama_0073	0.63	+0.7
79,170	-		Sama_0073	0.63	+0.1
79,170	-		Sama_0073	0.63	-0.9
79,170	-		Sama_0073	0.63	-0.3
79,170	-		Sama_0073	0.63	-0.1
79,170	-		Sama_0073	0.63	+0.5
79,235	+		Sama_0073	0.78	-0.9
79,236	-		Sama_0073	0.78	-2.5
79,236	-		Sama_0073	0.78	+1.9
79,236	-		Sama_0073	0.78	-0.1
79,240	+		Sama_0073	0.79	+0.4
79,240	+		Sama_0073	0.79	+0.2
79,241	-		Sama_0073	0.80	-1.7
79,246	-		Sama_0073	0.81	-0.6
79,246	-		Sama_0073	0.81	-1.3
79,246	-		Sama_0073	0.81	+1.6
79,363	-				+1.3
79,363	-				-1.5
79,436	+				-1.2
79,437	-				+0.6
79,437	-				+0.3
79,437	-				-0.5
79,476	-				+0.7
79,606	-		Sama_0074	0.25	-1.1
79,619	+		Sama_0074	0.27	-0.3
79,620	-		Sama_0074	0.27	+0.4
79,620	-		Sama_0074	0.27	-1.1
79,620	-		Sama_0074	0.27	-0.1
79,748	+		Sama_0074	0.46	+0.5
79,749	-		Sama_0074	0.46	-0.9
79,772	+		Sama_0074	0.49	-0.5
79,772	+		Sama_0074	0.49	-0.5
79,772	+		Sama_0074	0.49	+0.3
79,773	-		Sama_0074	0.50	+2.7
79,780	+		Sama_0074	0.51	+0.2
79,781	-		Sama_0074	0.51	+0.3
79,781	-		Sama_0074	0.51	+1.6
79,791	+		Sama_0074	0.52	+0.8
79,802	+		Sama_0074	0.54	-0.4
79,802	+		Sama_0074	0.54	+1.3
79,803	-		Sama_0074	0.54	+0.5
79,803	-		Sama_0074	0.54	+0.3
79,803	-		Sama_0074	0.54	+1.2
79,803	-		Sama_0074	0.54	-0.2
79,803	-		Sama_0074	0.54	+1.8