Strain Fitness in Shewanella amazonensis SB2B around Sama_0048

Experiment: Paraquat dichloride 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Paraquat dichloride 0.03125 mg/ml
50,324	+		Sama_0046	0.88	-1.5
50,325	-		Sama_0046	0.88	-2.4
50,341	+				+0.1
50,398	+				-1.1
50,399	-				-0.8
50,437	+				-0.5
50,437	+				-1.5
50,437	+				-0.6
50,437	+				-0.3
50,437	+				-2.0
50,437	+				+0.3
50,438	-				+0.6
50,438	-				+0.1
50,438	-				-1.0
50,438	-				-0.1
50,438	-				-0.0
50,438	-				-0.1
50,454	+				-0.2
50,455	-				-2.1
50,455	-				+1.1
50,493	+		Sama_0047	0.12	+1.1
50,493	+		Sama_0047	0.12	+1.3
50,493	+		Sama_0047	0.12	-0.3
50,493	+		Sama_0047	0.12	+0.6
50,494	-		Sama_0047	0.12	-0.3
50,494	-		Sama_0047	0.12	-0.3
50,495	+		Sama_0047	0.12	-0.6
50,496	-		Sama_0047	0.13	+0.4
50,496	-		Sama_0047	0.13	+1.0
50,496	-		Sama_0047	0.13	-1.7
50,496	-		Sama_0047	0.13	-0.7
50,537	+		Sama_0047	0.28	+0.3
50,537	+		Sama_0047	0.28	-0.6
50,537	+		Sama_0047	0.28	+0.3
50,537	+		Sama_0047	0.28	+0.5
50,537	+		Sama_0047	0.28	+0.5
50,537	+		Sama_0047	0.28	-0.7
50,537	+		Sama_0047	0.28	+0.2
50,537	+		Sama_0047	0.28	+1.1
50,537	+		Sama_0047	0.28	+0.4
50,537	+		Sama_0047	0.28	-0.3
50,538	-		Sama_0047	0.28	-1.1
50,538	-		Sama_0047	0.28	-0.7
50,538	-		Sama_0047	0.28	-0.3
50,538	-		Sama_0047	0.28	+1.2
50,538	-		Sama_0047	0.28	-1.8
50,541	+		Sama_0047	0.30	-0.2
50,541	+		Sama_0047	0.30	-1.0
50,541	+		Sama_0047	0.30	-0.7
50,541	+		Sama_0047	0.30	+0.5
50,550	+		Sama_0047	0.33	+0.7
50,550	+		Sama_0047	0.33	-0.5
50,551	-		Sama_0047	0.33	-0.9
50,557	-		Sama_0047	0.36	-0.1
50,685	+		Sama_0047	0.84	+0.1
50,685	+		Sama_0047	0.84	-0.9
50,686	-		Sama_0047	0.84	-2.8
50,686	-		Sama_0047	0.84	-0.4
50,686	-		Sama_0047	0.84	-0.5
50,686	-		Sama_0047	0.84	-1.5
50,686	-		Sama_0047	0.84	-2.6
50,686	-		Sama_0047	0.84	+0.3
50,686	-		Sama_0047	0.84	-1.2
50,697	+		Sama_0047	0.88	-0.3
50,698	-		Sama_0047	0.88	-0.3
50,708	+				-0.1
50,708	+				-0.5
50,711	+				+0.4
50,711	+				-1.7
50,711	+				-1.1
50,746	-				-1.2
50,746	-				-1.5
50,748	+				-0.1
50,749	-				+1.2
50,773	+				-0.7
50,773	+				+0.5
50,812	+				-2.6
50,812	+				-0.8
50,812	+				+1.3
50,812	+				-1.3
50,812	+				-0.9
50,812	+				-1.5
50,813	-				-0.9
50,813	-				+0.5
50,813	-				-1.3
50,818	+				-1.5
50,819	-				-0.3
50,830	+				-0.8
50,830	+				-1.3
50,830	+				+1.1
50,830	+				-1.0
50,830	+				+0.1
50,830	+				-1.6
50,830	+				-3.7
50,831	-				-0.6
50,831	-				+0.6
50,831	-				-0.9
50,899	+				-0.5
50,899	+				+0.6
50,899	+				-0.1
50,899	+				-0.7
50,900	-				-0.0
50,900	-				-0.2
50,900	-				+1.3
50,905	+				-0.8
50,906	-				-0.1
50,906	-				-1.5
50,906	-				-1.9
50,973	+				-0.5
50,973	+				-0.5
50,974	-				+0.0
50,974	-				+0.3
50,974	-				-0.6
50,974	-				+0.1
50,974	-				-0.7
51,009	-				-0.7
51,027	+				-0.5
51,027	+				-0.5
51,027	+				-0.2
51,028	-				-0.6
51,028	-				-1.6
51,028	-				-0.2
51,028	-				+0.1
51,028	-				-1.2
51,047	+				-0.3
51,047	+				-0.2
51,047	+				+1.0
51,047	+				+0.2
51,047	+				-0.2
51,048	-				-0.1
51,048	-				+0.3
51,054	-				-0.3
51,063	-				+0.0
51,066	+				-0.9
51,067	+				+1.5
51,067	+				+0.9
51,067	+				+0.6
51,067	+				+0.6
51,067	+				+0.7
51,067	+				-1.1
51,067	+				-0.6
51,067	+				+0.3
51,067	+				+0.8
51,067	+				-1.0
51,067	+				-0.8
51,067	+				-0.2
51,067	+				-0.4
51,067	+				-0.2
51,067	+				+0.8
51,067	+				-1.2
51,068	-				-1.9
51,068	-				-0.6
51,068	-				-0.5
51,068	-				+0.6
51,068	-				-0.9
51,068	-				+1.9
51,068	-				-1.6
51,068	-				+0.6
51,068	-				-1.6
51,068	-				-1.3
51,068	-				-1.9
51,068	-				-1.0
51,068	-				-1.3
51,068	-				+0.8
51,068	-				-0.8
51,068	-				-1.5
51,068	-				-1.5
51,068	-				-1.2
51,068	-				-0.4
51,068	-				-0.0
51,069	+				+0.6
51,069	+				+1.2
51,069	+				+0.8
51,069	+				-0.3
51,069	+				-0.4
51,069	+				+0.8
51,069	+				-0.1
51,069	+				+0.8
51,069	+				-0.4
51,069	+				+1.9
51,069	+				+0.4
51,069	+				-2.5
51,069	+				+0.7
51,070	-				-0.6
51,070	-				+2.4
51,070	-				+1.1
51,070	-				-1.2
51,070	-				-1.5
51,070	-				-0.7
51,070	-				+0.9
51,111	+				+0.2
51,111	+				-0.7
51,112	-				-1.3
51,112	-				+3.4
51,127	+				+0.3
51,127	+				+0.8
51,127	+				-1.8
51,128	-				-1.3
51,128	-				-0.0
51,128	-				-0.3
51,128	-				-0.5
51,138	+				+0.2
51,139	-				-2.0
51,139	-				+0.4
51,149	+				+0.9
51,149	+				-0.7
51,149	+				+0.3
51,149	+				+0.3
51,149	+				-0.8
51,150	-				-0.5
51,150	-				-0.1
51,150	-				-0.5
51,166	+				-1.2
51,166	+				-1.0
51,166	+				+1.3
51,167	-				-0.5
51,167	-				-1.9
51,167	-				-0.8
51,167	-				-1.4
51,171	+				-1.0
51,172	-				-0.5
51,172	-				+0.3
51,172	-				-0.6
51,188	+				+0.6
51,189	-				+0.8
51,189	-				+0.3
51,218	+				+1.3
51,218	+				+0.2
51,219	-				-0.2
51,248	+				+0.8
51,249	-				-0.5
51,249	-				-0.1
51,249	-				-0.9
51,249	-				-1.8
51,249	-				+0.7
51,258	+				+0.6
51,258	+				+1.1
51,259	-				+0.1
51,263	+				-1.2
51,263	+				+0.2
51,279	-				-0.2
51,280	-				-2.2
51,280	-				-1.1
51,280	-				+0.0
51,300	+				+0.0
51,300	+				+0.3
51,300	+				+0.6
51,300	+				-0.7
51,301	-				-0.6
51,301	-				+0.4
51,440	+		Sama_0048	0.27	-2.1
51,440	+		Sama_0048	0.27	+0.3
51,440	+		Sama_0048	0.27	-0.6
51,440	+		Sama_0048	0.27	-1.5
51,441	-		Sama_0048	0.27	-0.1
51,441	-		Sama_0048	0.27	+3.0
51,441	-		Sama_0048	0.27	-0.8
51,456	+		Sama_0048	0.29	-0.1
51,457	-		Sama_0048	0.30	-0.6
51,457	-		Sama_0048	0.30	-0.1
51,529	+		Sama_0048	0.42	-1.8
51,562	+		Sama_0048	0.48	-0.7
51,562	+		Sama_0048	0.48	-0.9
51,562	+		Sama_0048	0.48	-1.4
51,562	+		Sama_0048	0.48	-1.9
51,562	+		Sama_0048	0.48	-1.1
51,563	-		Sama_0048	0.48	-1.9
51,563	-		Sama_0048	0.48	+0.1
51,563	-		Sama_0048	0.48	+0.0
51,563	-		Sama_0048	0.48	-0.0
51,563	-		Sama_0048	0.48	-1.5
51,563	-		Sama_0048	0.48	-1.3
51,680	-		Sama_0048	0.69	+0.3
51,680	-		Sama_0048	0.69	-0.2
51,689	+		Sama_0048	0.71	+0.3
51,731	+		Sama_0048	0.78	-0.6
51,731	+		Sama_0048	0.78	-0.3
51,732	-		Sama_0048	0.78	-0.3
51,732	-		Sama_0048	0.78	-1.0
51,732	-		Sama_0048	0.78	-2.5
51,732	-		Sama_0048	0.78	-0.8
51,787	+		Sama_0048	0.88	-0.4
51,787	+		Sama_0048	0.88	-0.2
51,802	+				-0.4
51,824	-				+1.9
51,824	-				-1.7
51,836	+				+1.5
51,836	+				-0.5
51,836	+				+1.9
51,837	-				-1.3
51,837	-				-0.0
51,837	-				+0.3
51,837	-				+0.5
51,892	+				-2.7
51,892	+				-1.5
51,893	-				+0.3
51,893	-				-0.3
51,893	-				-0.8
51,894	+				+1.4
51,894	+				-0.7
51,894	+				-0.4
51,894	+				-0.7
51,894	+				+0.3
51,895	-				+1.3
51,895	-				-1.7
51,895	-				+0.9
51,895	-				+0.5
51,895	-				-0.1
51,958	+				+0.1
51,958	+				+0.5
51,958	+				-0.1
51,959	-				+0.8
51,959	-				+1.3
51,959	-				-1.7
51,959	-				-0.1
51,959	-				+1.2
51,959	-				+0.2
51,970	+				+1.5
51,970	+				-0.7
51,970	+				-0.3
51,970	+				-1.0
51,970	+				-1.2
51,970	+				+1.5
51,971	-				+0.4
51,971	-				-0.1
51,971	-				-0.7
52,036	+		Sama_0049	0.15	-0.9
52,036	+		Sama_0049	0.15	-1.6
52,036	+		Sama_0049	0.15	-0.3
52,036	+		Sama_0049	0.15	+0.4
52,036	+		Sama_0049	0.15	+1.3
52,036	+		Sama_0049	0.15	+0.0
52,036	+		Sama_0049	0.15	-1.5
52,036	+		Sama_0049	0.15	+0.8
52,036	+		Sama_0049	0.15	-0.3
52,036	+		Sama_0049	0.15	+0.2
52,036	+		Sama_0049	0.15	+0.5
52,036	+		Sama_0049	0.15	-1.1
52,036	+		Sama_0049	0.15	+0.3
52,036	+		Sama_0049	0.15	+0.2
52,036	+		Sama_0049	0.15	-1.4
52,036	+		Sama_0049	0.15	+0.4
52,036	+		Sama_0049	0.15	-0.1
52,037	-		Sama_0049	0.15	-1.6
52,037	-		Sama_0049	0.15	+2.2
52,037	-		Sama_0049	0.15	-0.1
52,037	-		Sama_0049	0.15	+0.7
52,037	-		Sama_0049	0.15	+1.2
52,037	-		Sama_0049	0.15	+1.0
52,037	-		Sama_0049	0.15	-0.9
52,037	-		Sama_0049	0.15	-1.6
52,037	-		Sama_0049	0.15	-1.3
52,038	+		Sama_0049	0.15	-0.8
52,038	+		Sama_0049	0.15	-1.5
52,038	+		Sama_0049	0.15	+0.2
52,038	+		Sama_0049	0.15	+0.9
52,039	-		Sama_0049	0.15	-0.1
52,039	-		Sama_0049	0.15	-0.9
52,039	-		Sama_0049	0.15	+1.1
52,039	-		Sama_0049	0.15	+0.5
52,073	+		Sama_0049	0.21	+0.5
52,075	+		Sama_0049	0.22	-0.1
52,075	+		Sama_0049	0.22	+0.9
52,075	+		Sama_0049	0.22	+1.0
52,075	+		Sama_0049	0.22	+1.9
52,075	+		Sama_0049	0.22	-0.4
52,076	-		Sama_0049	0.22	+0.1
52,076	-		Sama_0049	0.22	+0.7
52,076	-		Sama_0049	0.22	-0.0
52,076	-		Sama_0049	0.22	+0.5
52,076	-		Sama_0049	0.22	-0.7
52,093	+		Sama_0049	0.25	-0.7
52,094	-		Sama_0049	0.25	+1.0
52,094	-		Sama_0049	0.25	+0.5
52,094	-		Sama_0049	0.25	-0.6
52,120	+		Sama_0049	0.29	-0.2
52,120	+		Sama_0049	0.29	-1.0
52,120	+		Sama_0049	0.29	+0.9
52,121	-		Sama_0049	0.30	+0.3
52,121	-		Sama_0049	0.30	+2.2
52,121	-		Sama_0049	0.30	+0.9
52,121	-		Sama_0049	0.30	-0.5
52,158	+		Sama_0049	0.36	-1.5
52,158	+		Sama_0049	0.36	+1.4
52,158	+		Sama_0049	0.36	+1.5
52,158	+		Sama_0049	0.36	-0.0
52,159	-		Sama_0049	0.36	+0.9
52,159	-		Sama_0049	0.36	+0.3
52,159	-		Sama_0049	0.36	-0.5
52,159	-		Sama_0049	0.36	-1.7
52,159	-		Sama_0049	0.36	-0.5
52,159	-		Sama_0049	0.36	+1.4
52,159	-		Sama_0049	0.36	+0.6
52,159	-		Sama_0049	0.36	+0.4
52,159	-		Sama_0049	0.36	-2.7
52,159	-		Sama_0049	0.36	-1.2
52,160	+		Sama_0049	0.36	-0.1
52,160	+		Sama_0049	0.36	+0.5
52,160	+		Sama_0049	0.36	+0.4
52,160	+		Sama_0049	0.36	-0.4
52,161	-		Sama_0049	0.37	+1.6
52,161	-		Sama_0049	0.37	+0.6
52,161	-		Sama_0049	0.37	-0.9
52,161	-		Sama_0049	0.37	-1.1
52,161	-		Sama_0049	0.37	+0.2
52,161	-		Sama_0049	0.37	+0.6
52,168	+		Sama_0049	0.38	+2.1
52,169	-		Sama_0049	0.38	+0.3
52,169	-		Sama_0049	0.38	-0.6
52,169	-		Sama_0049	0.38	-0.1
52,169	-		Sama_0049	0.38	-1.0
52,192	+		Sama_0049	0.42	+1.3
52,192	+		Sama_0049	0.42	+0.7
52,192	+		Sama_0049	0.42	-0.6
52,192	+		Sama_0049	0.42	-1.4
52,193	-		Sama_0049	0.42	-0.2
52,193	-		Sama_0049	0.42	+0.5
52,193	-		Sama_0049	0.42	-1.4
52,226	+		Sama_0049	0.48	-0.2
52,226	+		Sama_0049	0.48	-1.4
52,226	+		Sama_0049	0.48	-0.2
52,227	-		Sama_0049	0.48	+0.9
52,227	-		Sama_0049	0.48	+0.5
52,227	-		Sama_0049	0.48	+0.1
52,255	+		Sama_0049	0.53	-0.1
52,255	+		Sama_0049	0.53	+0.3
52,255	+		Sama_0049	0.53	+0.9
52,255	+		Sama_0049	0.53	+0.3
52,255	+		Sama_0049	0.53	-0.5
52,255	+		Sama_0049	0.53	+0.4
52,255	+		Sama_0049	0.53	-0.4
52,255	+		Sama_0049	0.53	+0.4
52,255	+		Sama_0049	0.53	-0.9
52,255	+		Sama_0049	0.53	-0.7
52,255	+		Sama_0049	0.53	-0.5
52,256	-		Sama_0049	0.53	+0.5
52,256	-		Sama_0049	0.53	+0.7
52,256	-		Sama_0049	0.53	+1.9
52,256	-		Sama_0049	0.53	+0.1
52,256	-		Sama_0049	0.53	+1.0
52,262	+		Sama_0049	0.54	+0.9
52,262	+		Sama_0049	0.54	-0.4
52,263	-		Sama_0049	0.54	-1.5
52,284	-		Sama_0049	0.58	+0.9
52,295	+		Sama_0049	0.60	-1.3
52,296	-		Sama_0049	0.60	-2.1
52,318	+		Sama_0049	0.64	+0.4
52,318	+		Sama_0049	0.64	-0.9
52,318	+		Sama_0049	0.64	+0.5
52,318	+		Sama_0049	0.64	-0.2
52,318	+		Sama_0049	0.64	-0.1
52,319	-		Sama_0049	0.64	+0.5
52,319	-		Sama_0049	0.64	+1.1
52,319	-		Sama_0049	0.64	-0.1
52,319	-		Sama_0049	0.64	+1.0
52,332	+		Sama_0049	0.66	-0.1
52,332	+		Sama_0049	0.66	-0.2
52,332	+		Sama_0049	0.66	+0.5
52,333	-		Sama_0049	0.67	+0.7
52,333	-		Sama_0049	0.67	+0.3
52,333	-		Sama_0049	0.67	+1.0
52,333	-		Sama_0049	0.67	+0.7
52,333	-		Sama_0049	0.67	+0.5
52,333	-		Sama_0049	0.67	+0.1
52,333	-		Sama_0049	0.67	-1.2
52,354	+		Sama_0049	0.70	-0.5
52,354	+		Sama_0049	0.70	+1.2
52,427	+		Sama_0049	0.83	+0.1
52,485	-				-1.5
52,505	+				-1.5
52,505	+				-0.2
52,505	+				+0.3
52,506	-				+1.3
52,506	-				-0.9
52,521	+				+0.7
52,521	+				+0.3
52,521	+				-1.3
52,521	+				-0.4
52,521	+				-0.0
52,562	+				-1.9
52,575	-				-1.1
52,590	+				-0.1
52,704	-		Sama_0050	0.18	-0.7
52,843	+		Sama_0050	0.33	-1.1
52,843	+		Sama_0050	0.33	-1.6
52,843	+		Sama_0050	0.33	-2.1
52,843	+		Sama_0050	0.33	-1.8
52,843	+		Sama_0050	0.33	-0.7
52,844	-		Sama_0050	0.34	-1.8
52,844	-		Sama_0050	0.34	-3.0
52,844	-		Sama_0050	0.34	-1.7
52,844	-		Sama_0050	0.34	+0.9
52,845	+		Sama_0050	0.34	-0.9
52,845	+		Sama_0050	0.34	-0.7
52,846	-		Sama_0050	0.34	-0.9
52,846	-		Sama_0050	0.34	-2.3
52,846	-		Sama_0050	0.34	-0.7