Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0041 and Sama_0042 overlap by 1 nucleotides Sama_0042 and def are separated by 15 nucleotides def and Sama_0044 are separated by 187 nucleotides
Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088
_0041
Sama_0042: Sama_0042 - methionyl-tRNA formyltransferase (RefSeq), at 46,088 to 47,050
_0042
Sama_0043: def - peptide deformylase (RefSeq), at 47,066 to 47,569
def
Sama_0044: Sama_0044 - LysM domain-containing protein (RefSeq), at 47,757 to 48,797
_0044
Position (kb) 47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 46.082 kb on + strand at 46.083 kb on - strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.090 kb on - strand at 46.090 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.134 kb on - strand, within def at 47.134 kb on - strand, within def at 47.134 kb on - strand, within def at 47.570 kb on - strand at 47.570 kb on - strand at 47.574 kb on - strand at 47.574 kb on - strand at 47.612 kb on + strand at 47.613 kb on - strand at 47.615 kb on - strand at 47.627 kb on - strand at 47.627 kb on - strand at 47.640 kb on + strand at 47.648 kb on - strand at 47.657 kb on - strand at 47.660 kb on + strand at 47.660 kb on + strand at 47.661 kb on - strand at 47.661 kb on - strand at 47.661 kb on - strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.678 kb on + strand at 47.716 kb on + strand at 47.716 kb on + strand at 47.717 kb on - strand at 47.722 kb on + strand at 47.722 kb on + strand at 47.722 kb on + strand at 47.723 kb on - strand at 47.731 kb on + strand at 47.740 kb on + strand at 47.777 kb on + strand at 47.778 kb on - strand at 47.778 kb on - strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.831 kb on + strand at 47.848 kb on + strand at 47.987 kb on + strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.051 kb on - strand, within Sama_0044 at 48.051 kb on - strand, within Sama_0044 at 48.051 kb on - strand, within Sama_0044 at 48.060 kb on + strand, within Sama_0044 at 48.061 kb on - strand, within Sama_0044 at 48.165 kb on + strand, within Sama_0044 at 48.165 kb on + strand, within Sama_0044 at 48.165 kb on + strand, within Sama_0044 at 48.165 kb on + strand, within Sama_0044 at 48.165 kb on + strand, within Sama_0044 at 48.165 kb on + strand, within Sama_0044 at 48.166 kb on - strand, within Sama_0044 at 48.166 kb on - strand, within Sama_0044 at 48.166 kb on - strand, within Sama_0044 at 48.166 kb on - strand, within Sama_0044 at 48.191 kb on + strand, within Sama_0044 at 48.191 kb on + strand, within Sama_0044 at 48.191 kb on + strand, within Sama_0044 at 48.191 kb on + strand, within Sama_0044 at 48.192 kb on - strand, within Sama_0044 at 48.192 kb on - strand, within Sama_0044 at 48.192 kb on - strand, within Sama_0044 at 48.192 kb on - strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.207 kb on + strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.208 kb on - strand, within Sama_0044 at 48.266 kb on + strand, within Sama_0044 at 48.266 kb on + strand, within Sama_0044 at 48.353 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.396 kb on + strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.397 kb on - strand, within Sama_0044 at 48.401 kb on + strand, within Sama_0044 at 48.402 kb on - strand, within Sama_0044 at 48.402 kb on - strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.432 kb on + strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.433 kb on - strand, within Sama_0044 at 48.471 kb on - strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.486 kb on + strand, within Sama_0044 at 48.487 kb on - strand, within Sama_0044 at 48.487 kb on - strand, within Sama_0044 at 48.487 kb on - strand, within Sama_0044 at 48.487 kb on - strand, within Sama_0044 at 48.487 kb on - strand, within Sama_0044 at 48.487 kb on - strand, within Sama_0044 at 48.566 kb on + strand, within Sama_0044 at 48.567 kb on - strand, within Sama_0044 at 48.567 kb on - strand, within Sama_0044 at 48.569 kb on + strand, within Sama_0044 at 48.569 kb on + strand, within Sama_0044
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 46,082 + +0.5 46,083 - -0.7 46,089 + +0.9 46,089 + -2.3 46,089 + +0.6 46,090 - +1.2 46,090 - -1.6 47,068 - -0.1 47,068 - -0.5 47,068 - -0.1 47,068 - -1.1 47,068 - -0.7 47,068 - -0.5 47,068 - -0.0 47,134 - def Sama_0043 0.13 -0.9 47,134 - def Sama_0043 0.13 +0.9 47,134 - def Sama_0043 0.13 -0.6 47,570 - -0.8 47,570 - +1.6 47,574 - -0.0 47,574 - +0.5 47,612 + -1.6 47,613 - -0.9 47,615 - +0.1 47,627 - +0.3 47,627 - -1.1 47,640 + +0.5 47,648 - -0.9 47,657 - -0.4 47,660 + +0.5 47,660 + -2.1 47,661 - +1.1 47,661 - +0.3 47,661 - +0.1 47,666 + -0.5 47,666 + +0.6 47,666 + -0.3 47,666 + -1.1 47,666 + +0.5 47,667 - +0.1 47,667 - +0.2 47,667 - +0.9 47,667 - -3.8 47,667 - -0.7 47,667 - +0.7 47,667 - +1.2 47,667 - +0.3 47,667 - -1.1 47,667 - -0.3 47,667 - -2.3 47,678 + -1.9 47,716 + -0.7 47,716 + -0.7 47,717 - +0.3 47,722 + +0.9 47,722 + -1.5 47,722 + -0.1 47,723 - -1.3 47,731 + -0.4 47,740 + -0.7 47,777 + +0.5 47,778 - -0.1 47,778 - -0.2 47,799 + +0.5 47,799 + -1.8 47,799 + -0.1 47,799 + +0.4 47,799 + +0.6 47,799 + -0.8 47,799 + +0.3 47,799 + -0.5 47,800 - -0.4 47,800 - -1.4 47,800 - -2.5 47,800 - -0.6 47,800 - +1.1 47,800 - +0.6 47,800 - +0.9 47,800 - -0.3 47,800 - -0.2 47,831 + -0.4 47,848 + -0.9 47,987 + Sama_0044 0.22 +0.1 47,988 - Sama_0044 0.22 +0.2 47,988 - Sama_0044 0.22 -0.4 47,988 - Sama_0044 0.22 -0.5 48,050 + Sama_0044 0.28 +0.9 48,050 + Sama_0044 0.28 -1.1 48,050 + Sama_0044 0.28 -2.9 48,050 + Sama_0044 0.28 -0.1 48,051 - Sama_0044 0.28 -1.8 48,051 - Sama_0044 0.28 -0.3 48,051 - Sama_0044 0.28 -1.1 48,060 + Sama_0044 0.29 -0.8 48,061 - Sama_0044 0.29 -0.9 48,165 + Sama_0044 0.39 +0.4 48,165 + Sama_0044 0.39 -2.1 48,165 + Sama_0044 0.39 +0.1 48,165 + Sama_0044 0.39 -0.1 48,165 + Sama_0044 0.39 +0.5 48,165 + Sama_0044 0.39 +1.1 48,166 - Sama_0044 0.39 -0.5 48,166 - Sama_0044 0.39 -0.0 48,166 - Sama_0044 0.39 -1.6 48,166 - Sama_0044 0.39 -0.3 48,191 + Sama_0044 0.42 -0.2 48,191 + Sama_0044 0.42 +0.0 48,191 + Sama_0044 0.42 +0.2 48,191 + Sama_0044 0.42 -0.2 48,192 - Sama_0044 0.42 -1.1 48,192 - Sama_0044 0.42 +0.4 48,192 - Sama_0044 0.42 -1.1 48,192 - Sama_0044 0.42 -0.3 48,207 + Sama_0044 0.43 -0.3 48,207 + Sama_0044 0.43 -1.1 48,207 + Sama_0044 0.43 -0.5 48,207 + Sama_0044 0.43 -0.2 48,207 + Sama_0044 0.43 -1.3 48,207 + Sama_0044 0.43 +0.9 48,207 + Sama_0044 0.43 +0.4 48,207 + Sama_0044 0.43 -0.0 48,208 - Sama_0044 0.43 +0.3 48,208 - Sama_0044 0.43 -2.4 48,208 - Sama_0044 0.43 +0.3 48,208 - Sama_0044 0.43 +0.1 48,208 - Sama_0044 0.43 -0.1 48,208 - Sama_0044 0.43 +1.2 48,208 - Sama_0044 0.43 -0.4 48,266 + Sama_0044 0.49 -2.8 48,266 + Sama_0044 0.49 -0.1 48,353 + Sama_0044 0.57 -0.5 48,396 + Sama_0044 0.61 +0.3 48,396 + Sama_0044 0.61 -0.1 48,396 + Sama_0044 0.61 -2.7 48,396 + Sama_0044 0.61 +1.3 48,396 + Sama_0044 0.61 -0.5 48,396 + Sama_0044 0.61 -1.1 48,396 + Sama_0044 0.61 -0.5 48,396 + Sama_0044 0.61 +0.4 48,396 + Sama_0044 0.61 +1.2 48,396 + Sama_0044 0.61 +0.2 48,397 - Sama_0044 0.61 -0.2 48,397 - Sama_0044 0.61 +0.5 48,397 - Sama_0044 0.61 -0.7 48,397 - Sama_0044 0.61 -1.9 48,397 - Sama_0044 0.61 -0.7 48,397 - Sama_0044 0.61 +0.1 48,397 - Sama_0044 0.61 +0.6 48,397 - Sama_0044 0.61 -0.1 48,397 - Sama_0044 0.61 -2.4 48,401 + Sama_0044 0.62 -0.9 48,402 - Sama_0044 0.62 -0.5 48,402 - Sama_0044 0.62 -0.6 48,432 + Sama_0044 0.65 +0.3 48,432 + Sama_0044 0.65 -0.3 48,432 + Sama_0044 0.65 -0.6 48,432 + Sama_0044 0.65 -0.0 48,432 + Sama_0044 0.65 +0.0 48,432 + Sama_0044 0.65 -0.6 48,432 + Sama_0044 0.65 -0.9 48,433 - Sama_0044 0.65 +0.6 48,433 - Sama_0044 0.65 -0.1 48,433 - Sama_0044 0.65 -2.4 48,433 - Sama_0044 0.65 +0.3 48,433 - Sama_0044 0.65 -0.4 48,433 - Sama_0044 0.65 -0.1 48,433 - Sama_0044 0.65 -0.7 48,433 - Sama_0044 0.65 +0.4 48,433 - Sama_0044 0.65 +0.1 48,433 - Sama_0044 0.65 +1.1 48,471 - Sama_0044 0.69 -0.5 48,486 + Sama_0044 0.70 -2.0 48,486 + Sama_0044 0.70 +0.3 48,486 + Sama_0044 0.70 -0.7 48,486 + Sama_0044 0.70 -0.1 48,486 + Sama_0044 0.70 +0.5 48,486 + Sama_0044 0.70 +0.9 48,486 + Sama_0044 0.70 -1.1 48,486 + Sama_0044 0.70 -1.6 48,486 + Sama_0044 0.70 +0.2 48,486 + Sama_0044 0.70 -0.9 48,486 + Sama_0044 0.70 +0.9 48,486 + Sama_0044 0.70 +0.0 48,486 + Sama_0044 0.70 -1.3 48,486 + Sama_0044 0.70 +0.2 48,487 - Sama_0044 0.70 -0.9 48,487 - Sama_0044 0.70 -1.7 48,487 - Sama_0044 0.70 +0.9 48,487 - Sama_0044 0.70 +0.9 48,487 - Sama_0044 0.70 -0.5 48,487 - Sama_0044 0.70 -0.4 48,566 + Sama_0044 0.78 -0.2 48,567 - Sama_0044 0.78 +0.2 48,567 - Sama_0044 0.78 -0.3 48,569 + Sama_0044 0.78 -0.0 48,569 + Sama_0044 0.78 -1.1
Or see this region's nucleotide sequence