Experiment: Paraquat dichloride 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0041 and Sama_0042 overlap by 1 nucleotides Sama_0042 and def are separated by 15 nucleotides def and Sama_0044 are separated by 187 nucleotides
Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088
_0041
Sama_0042: Sama_0042 - methionyl-tRNA formyltransferase (RefSeq), at 46,088 to 47,050
_0042
Sama_0043: def - peptide deformylase (RefSeq), at 47,066 to 47,569
def
Sama_0044: Sama_0044 - LysM domain-containing protein (RefSeq), at 47,757 to 48,797
_0044
Position (kb) 46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 45.357 kb on + strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.513 kb on + strand, within Sama_0041 at 45.514 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.575 kb on + strand, within Sama_0041 at 45.576 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.676 kb on + strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.725 kb on + strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.855 kb on + strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.952 kb on + strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 46.082 kb on + strand at 46.083 kb on - strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.090 kb on - strand at 46.090 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.134 kb on - strand, within def at 47.134 kb on - strand, within def at 47.134 kb on - strand, within def at 47.570 kb on - strand at 47.570 kb on - strand at 47.574 kb on - strand at 47.574 kb on - strand at 47.612 kb on + strand at 47.613 kb on - strand at 47.615 kb on - strand at 47.627 kb on - strand at 47.627 kb on - strand at 47.640 kb on + strand at 47.648 kb on - strand at 47.657 kb on - strand at 47.660 kb on + strand at 47.660 kb on + strand at 47.661 kb on - strand at 47.661 kb on - strand at 47.661 kb on - strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.678 kb on + strand at 47.716 kb on + strand at 47.716 kb on + strand at 47.717 kb on - strand at 47.722 kb on + strand at 47.722 kb on + strand at 47.722 kb on + strand at 47.723 kb on - strand at 47.731 kb on + strand at 47.740 kb on + strand at 47.777 kb on + strand at 47.778 kb on - strand at 47.778 kb on - strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.831 kb on + strand at 47.848 kb on + strand at 47.987 kb on + strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.03125 mg/ml remove 45,357 + Sama_0041 0.43 +1.9 45,358 - Sama_0041 0.43 -2.3 45,358 - Sama_0041 0.43 -0.9 45,358 - Sama_0041 0.43 -0.5 45,513 + Sama_0041 0.55 -0.7 45,514 - Sama_0041 0.55 -0.7 45,542 - Sama_0041 0.57 -1.3 45,542 - Sama_0041 0.57 -1.0 45,542 - Sama_0041 0.57 -0.2 45,542 - Sama_0041 0.57 +0.6 45,575 + Sama_0041 0.60 +0.1 45,576 - Sama_0041 0.60 -0.2 45,610 - Sama_0041 0.63 +0.4 45,610 - Sama_0041 0.63 -1.3 45,610 - Sama_0041 0.63 -1.1 45,610 - Sama_0041 0.63 -1.2 45,610 - Sama_0041 0.63 -1.9 45,610 - Sama_0041 0.63 -0.8 45,610 - Sama_0041 0.63 -1.4 45,675 - Sama_0041 0.68 +0.1 45,675 - Sama_0041 0.68 -0.9 45,676 + Sama_0041 0.68 -0.9 45,677 - Sama_0041 0.68 -0.2 45,677 - Sama_0041 0.68 -0.9 45,677 - Sama_0041 0.68 +0.5 45,725 + Sama_0041 0.72 -0.4 45,726 - Sama_0041 0.72 -0.6 45,726 - Sama_0041 0.72 -0.1 45,726 - Sama_0041 0.72 -0.5 45,726 - Sama_0041 0.72 -0.7 45,753 + Sama_0041 0.74 -2.7 45,753 + Sama_0041 0.74 -0.7 45,753 + Sama_0041 0.74 -1.4 45,753 + Sama_0041 0.74 -1.7 45,832 + Sama_0041 0.80 -1.9 45,832 + Sama_0041 0.80 +0.9 45,832 + Sama_0041 0.80 -1.5 45,832 + Sama_0041 0.80 -0.1 45,832 + Sama_0041 0.80 -0.2 45,833 - Sama_0041 0.80 -0.1 45,833 - Sama_0041 0.80 -1.3 45,833 - Sama_0041 0.80 -1.7 45,841 + Sama_0041 0.81 -0.2 45,841 + Sama_0041 0.81 +0.5 45,841 + Sama_0041 0.81 -0.3 45,855 + Sama_0041 0.82 -0.5 45,856 - Sama_0041 0.82 -0.9 45,856 - Sama_0041 0.82 +0.1 45,856 - Sama_0041 0.82 -1.9 45,856 - Sama_0041 0.82 -0.6 45,902 + Sama_0041 0.85 -2.9 45,902 + Sama_0041 0.85 +1.9 45,902 + Sama_0041 0.85 -1.0 45,902 + Sama_0041 0.85 -0.9 45,902 + Sama_0041 0.85 +0.1 45,902 + Sama_0041 0.85 +0.4 45,902 + Sama_0041 0.85 -1.2 45,903 - Sama_0041 0.86 -0.7 45,903 - Sama_0041 0.86 +0.2 45,903 - Sama_0041 0.86 +1.9 45,903 - Sama_0041 0.86 +0.3 45,903 - Sama_0041 0.86 -0.6 45,903 - Sama_0041 0.86 +1.3 45,903 - Sama_0041 0.86 -1.2 45,903 - Sama_0041 0.86 -1.6 45,904 + Sama_0041 0.86 -1.3 45,904 + Sama_0041 0.86 +0.9 45,904 + Sama_0041 0.86 -0.5 45,904 + Sama_0041 0.86 -0.8 45,904 + Sama_0041 0.86 -1.9 45,904 + Sama_0041 0.86 -0.9 45,904 + Sama_0041 0.86 -0.7 45,904 + Sama_0041 0.86 -0.0 45,905 - Sama_0041 0.86 -1.1 45,905 - Sama_0041 0.86 +1.1 45,905 - Sama_0041 0.86 -0.7 45,905 - Sama_0041 0.86 -2.7 45,905 - Sama_0041 0.86 -2.0 45,905 - Sama_0041 0.86 -1.2 45,905 - Sama_0041 0.86 -2.2 45,952 + Sama_0041 0.89 +1.1 45,953 - Sama_0041 0.89 -0.7 45,953 - Sama_0041 0.89 -2.4 46,082 + +0.5 46,083 - -0.7 46,089 + +0.9 46,089 + -2.3 46,089 + +0.6 46,090 - +1.2 46,090 - -1.6 47,068 - -0.1 47,068 - -0.5 47,068 - -0.1 47,068 - -1.1 47,068 - -0.7 47,068 - -0.5 47,068 - -0.0 47,134 - def Sama_0043 0.13 -0.9 47,134 - def Sama_0043 0.13 +0.9 47,134 - def Sama_0043 0.13 -0.6 47,570 - -0.8 47,570 - +1.6 47,574 - -0.0 47,574 - +0.5 47,612 + -1.6 47,613 - -0.9 47,615 - +0.1 47,627 - +0.3 47,627 - -1.1 47,640 + +0.5 47,648 - -0.9 47,657 - -0.4 47,660 + +0.5 47,660 + -2.1 47,661 - +1.1 47,661 - +0.3 47,661 - +0.1 47,666 + -0.5 47,666 + +0.6 47,666 + -0.3 47,666 + -1.1 47,666 + +0.5 47,667 - +0.1 47,667 - +0.2 47,667 - +0.9 47,667 - -3.8 47,667 - -0.7 47,667 - +0.7 47,667 - +1.2 47,667 - +0.3 47,667 - -1.1 47,667 - -0.3 47,667 - -2.3 47,678 + -1.9 47,716 + -0.7 47,716 + -0.7 47,717 - +0.3 47,722 + +0.9 47,722 + -1.5 47,722 + -0.1 47,723 - -1.3 47,731 + -0.4 47,740 + -0.7 47,777 + +0.5 47,778 - -0.1 47,778 - -0.2 47,799 + +0.5 47,799 + -1.8 47,799 + -0.1 47,799 + +0.4 47,799 + +0.6 47,799 + -0.8 47,799 + +0.3 47,799 + -0.5 47,800 - -0.4 47,800 - -1.4 47,800 - -2.5 47,800 - -0.6 47,800 - +1.1 47,800 - +0.6 47,800 - +0.9 47,800 - -0.3 47,800 - -0.2 47,831 + -0.4 47,848 + -0.9 47,987 + Sama_0044 0.22 +0.1 47,988 - Sama_0044 0.22 +0.2 47,988 - Sama_0044 0.22 -0.4 47,988 - Sama_0044 0.22 -0.5 48,050 + Sama_0044 0.28 +0.9 48,050 + Sama_0044 0.28 -1.1 48,050 + Sama_0044 0.28 -2.9 48,050 + Sama_0044 0.28 -0.1
Or see this region's nucleotide sequence