Strain Fitness in Marinobacter adhaerens HP15 around HP15_2656

Experiment: m.b. Choline Lysine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2655 and HP15_2656 are separated by 28 nucleotidesHP15_2656 and HP15_2657 are separated by 90 nucleotidesHP15_2657 and HP15_2658 are separated by 5 nucleotides HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495 _2655 HP15_2656: HP15_2656 - glucose-methanol-choline oxidoreductase, at 2,805,524 to 2,807,194 _2656 HP15_2657: HP15_2657 - threonine efflux protein, at 2,807,285 to 2,807,905 _2657 HP15_2658: HP15_2658 - nucleoside-diphosphate-sugar epimerase, at 2,807,911 to 2,808,582 _2658 Position (kb) 2805 2806 2807 2808Strain fitness (log2 ratio) -1 0 1at 2804.775 kb on + strand, within HP15_2655at 2804.911 kb on - strand, within HP15_2655at 2804.974 kb on + strand, within HP15_2655at 2804.993 kb on + strand, within HP15_2655at 2805.017 kb on + strand, within HP15_2655at 2805.017 kb on + strand, within HP15_2655at 2805.052 kb on + strand, within HP15_2655at 2805.160 kb on + strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.168 kb on - strand, within HP15_2655at 2805.299 kb on - strand, within HP15_2655at 2805.446 kb on - strandat 2805.672 kb on + strandat 2805.753 kb on + strand, within HP15_2656at 2805.847 kb on + strand, within HP15_2656at 2805.861 kb on - strand, within HP15_2656at 2805.985 kb on - strand, within HP15_2656at 2806.128 kb on + strand, within HP15_2656at 2806.208 kb on - strand, within HP15_2656at 2806.507 kb on + strand, within HP15_2656at 2806.594 kb on - strand, within HP15_2656at 2806.615 kb on + strand, within HP15_2656at 2806.677 kb on + strand, within HP15_2656at 2806.677 kb on + strand, within HP15_2656at 2806.677 kb on + strand, within HP15_2656at 2806.678 kb on - strand, within HP15_2656at 2806.685 kb on - strand, within HP15_2656at 2807.041 kb on + strandat 2807.144 kb on + strandat 2807.144 kb on + strandat 2807.280 kb on - strandat 2808.016 kb on - strand, within HP15_2658at 2808.102 kb on + strand, within HP15_2658at 2808.108 kb on - strand, within HP15_2658at 2808.139 kb on - strand, within HP15_2658at 2808.144 kb on - strand, within HP15_2658at 2808.170 kb on - strand, within HP15_2658

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline Lysine 10 mM
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2,804,775 + HP15_2655 0.52 -0.2
2,804,911 - HP15_2655 0.61 +0.4
2,804,974 + HP15_2655 0.65 +0.6
2,804,993 + HP15_2655 0.67 +0.8
2,805,017 + HP15_2655 0.68 -0.1
2,805,017 + HP15_2655 0.68 +0.1
2,805,052 + HP15_2655 0.71 -0.3
2,805,160 + HP15_2655 0.78 -0.5
2,805,168 - HP15_2655 0.78 -0.1
2,805,168 - HP15_2655 0.78 +0.1
2,805,168 - HP15_2655 0.78 +0.5
2,805,168 - HP15_2655 0.78 -0.2
2,805,168 - HP15_2655 0.78 -0.1
2,805,299 - HP15_2655 0.87 +0.2
2,805,446 - +0.8
2,805,672 + +0.0
2,805,753 + HP15_2656 0.14 +0.7
2,805,847 + HP15_2656 0.19 -0.3
2,805,861 - HP15_2656 0.20 +0.1
2,805,985 - HP15_2656 0.28 -0.4
2,806,128 + HP15_2656 0.36 +0.2
2,806,208 - HP15_2656 0.41 +0.1
2,806,507 + HP15_2656 0.59 -0.4
2,806,594 - HP15_2656 0.64 +0.1
2,806,615 + HP15_2656 0.65 +0.0
2,806,677 + HP15_2656 0.69 +0.9
2,806,677 + HP15_2656 0.69 +0.1
2,806,677 + HP15_2656 0.69 +0.5
2,806,678 - HP15_2656 0.69 -0.4
2,806,685 - HP15_2656 0.69 +0.5
2,807,041 + -0.2
2,807,144 + -0.2
2,807,144 + -0.4
2,807,280 - +0.4
2,808,016 - HP15_2658 0.16 +0.2
2,808,102 + HP15_2658 0.28 -0.2
2,808,108 - HP15_2658 0.29 +0.7
2,808,139 - HP15_2658 0.34 +1.0
2,808,144 - HP15_2658 0.35 -0.5
2,808,170 - HP15_2658 0.39 -0.3

Or see this region's nucleotide sequence