Strain Fitness in Shewanella amazonensis SB2B around Sama_3535

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_3533 and Sama_3534 are separated by 19 nucleotidesSama_3534 and Sama_3535 are separated by 49 nucleotidesSama_3535 and Sama_3536 are separated by 3 nucleotidesSama_3536 and Sama_3537 overlap by 27 nucleotides Sama_3533: Sama_3533 - hypothetical protein (RefSeq), at 4,165,127 to 4,165,651 _3533 Sama_3534: Sama_3534 - response regulator receiver protein (RefSeq), at 4,165,671 to 4,166,348 _3534 Sama_3535: Sama_3535 - sensor histidine kinase (RefSeq), at 4,166,398 to 4,167,657 _3535 Sama_3536: Sama_3536 - pseudouridine synthase RluA-like protein (RefSeq), at 4,167,661 to 4,168,335 _3536 Sama_3537: Sama_3537 - GGDEF family protein (RefSeq), at 4,168,309 to 4,169,490 _3537 Position (kb) 4166 4167 4168Strain fitness (log2 ratio) -2 -1 0 1 2at 4165.402 kb on + strand, within Sama_3533at 4165.618 kb on + strandat 4165.659 kb on + strandat 4165.659 kb on + strandat 4166.346 kb on + strandat 4166.346 kb on + strandat 4167.655 kb on + strandat 4167.655 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.660 kb on + strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.661 kb on - strandat 4167.664 kb on + strandat 4167.664 kb on + strandat 4167.664 kb on + strandat 4167.752 kb on + strand, within Sama_3536at 4167.752 kb on + strand, within Sama_3536at 4167.752 kb on + strand, within Sama_3536at 4167.752 kb on + strand, within Sama_3536at 4167.753 kb on - strand, within Sama_3536at 4167.753 kb on - strand, within Sama_3536at 4167.753 kb on - strand, within Sama_3536at 4167.753 kb on - strand, within Sama_3536at 4167.753 kb on - strand, within Sama_3536at 4167.753 kb on - strand, within Sama_3536at 4167.782 kb on + strand, within Sama_3536at 4167.783 kb on - strand, within Sama_3536at 4167.783 kb on - strand, within Sama_3536at 4167.790 kb on + strand, within Sama_3536at 4167.833 kb on + strand, within Sama_3536at 4167.834 kb on - strand, within Sama_3536at 4167.834 kb on - strand, within Sama_3536at 4167.834 kb on - strand, within Sama_3536at 4167.834 kb on - strand, within Sama_3536at 4167.834 kb on - strand, within Sama_3536at 4167.901 kb on + strand, within Sama_3536at 4167.901 kb on + strand, within Sama_3536at 4167.901 kb on + strand, within Sama_3536at 4167.902 kb on - strand, within Sama_3536at 4167.902 kb on - strand, within Sama_3536at 4167.902 kb on - strand, within Sama_3536at 4167.902 kb on - strand, within Sama_3536at 4167.904 kb on + strand, within Sama_3536at 4167.904 kb on + strand, within Sama_3536at 4167.905 kb on - strand, within Sama_3536at 4167.905 kb on - strand, within Sama_3536at 4167.960 kb on + strand, within Sama_3536at 4167.960 kb on + strand, within Sama_3536at 4167.960 kb on + strand, within Sama_3536at 4167.960 kb on + strand, within Sama_3536at 4167.960 kb on + strand, within Sama_3536at 4167.985 kb on + strand, within Sama_3536at 4167.985 kb on + strand, within Sama_3536at 4167.985 kb on + strand, within Sama_3536at 4167.985 kb on + strand, within Sama_3536at 4167.985 kb on + strand, within Sama_3536at 4167.986 kb on - strand, within Sama_3536at 4167.986 kb on - strand, within Sama_3536at 4167.986 kb on - strand, within Sama_3536at 4167.986 kb on - strand, within Sama_3536at 4167.986 kb on - strand, within Sama_3536at 4167.986 kb on - strand, within Sama_3536at 4167.992 kb on + strand, within Sama_3536at 4167.992 kb on + strand, within Sama_3536at 4167.993 kb on - strand, within Sama_3536at 4168.055 kb on + strand, within Sama_3536at 4168.056 kb on - strand, within Sama_3536at 4168.056 kb on - strand, within Sama_3536at 4168.056 kb on - strand, within Sama_3536at 4168.063 kb on + strand, within Sama_3536at 4168.063 kb on + strand, within Sama_3536at 4168.063 kb on + strand, within Sama_3536at 4168.063 kb on + strand, within Sama_3536at 4168.134 kb on - strand, within Sama_3536at 4168.151 kb on - strand, within Sama_3536at 4168.177 kb on + strand, within Sama_3536at 4168.177 kb on + strand, within Sama_3536at 4168.178 kb on - strand, within Sama_3536at 4168.211 kb on + strand, within Sama_3536at 4168.236 kb on + strand, within Sama_3536at 4168.236 kb on + strand, within Sama_3536at 4168.236 kb on + strand, within Sama_3536at 4168.236 kb on + strand, within Sama_3536at 4168.236 kb on + strand, within Sama_3536at 4168.236 kb on + strand, within Sama_3536at 4168.274 kb on + strandat 4168.274 kb on + strandat 4168.274 kb on + strandat 4168.275 kb on - strandat 4168.373 kb on + strandat 4168.373 kb on + strandat 4168.373 kb on + strandat 4168.373 kb on + strandat 4168.373 kb on + strandat 4168.373 kb on + strandat 4168.373 kb on + strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.374 kb on - strandat 4168.456 kb on + strand, within Sama_3537at 4168.456 kb on + strand, within Sama_3537at 4168.457 kb on - strand, within Sama_3537at 4168.536 kb on + strand, within Sama_3537at 4168.536 kb on + strand, within Sama_3537at 4168.537 kb on - strand, within Sama_3537at 4168.537 kb on - strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.588 kb on + strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.589 kb on - strand, within Sama_3537at 4168.593 kb on + strand, within Sama_3537at 4168.593 kb on + strand, within Sama_3537at 4168.611 kb on + strand, within Sama_3537at 4168.611 kb on + strand, within Sama_3537at 4168.611 kb on + strand, within Sama_3537at 4168.611 kb on + strand, within Sama_3537at 4168.611 kb on + strand, within Sama_3537at 4168.612 kb on - strand, within Sama_3537at 4168.612 kb on - strand, within Sama_3537at 4168.612 kb on - strand, within Sama_3537at 4168.612 kb on - strand, within Sama_3537at 4168.612 kb on - strand, within Sama_3537at 4168.612 kb on - strand, within Sama_3537at 4168.618 kb on + strand, within Sama_3537at 4168.618 kb on + strand, within Sama_3537at 4168.619 kb on - strand, within Sama_3537at 4168.621 kb on + strand, within Sama_3537at 4168.621 kb on + strand, within Sama_3537at 4168.622 kb on - strand, within Sama_3537at 4168.622 kb on - strand, within Sama_3537

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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4,165,402 + Sama_3533 0.52 -0.4
4,165,618 + +0.2
4,165,659 + -1.9
4,165,659 + -0.4
4,166,346 + +1.8
4,166,346 + -0.2
4,167,655 + -0.0
4,167,655 + -0.4
4,167,660 + +0.7
4,167,660 + -0.2
4,167,660 + -0.1
4,167,660 + -0.5
4,167,660 + +0.0
4,167,660 + -1.0
4,167,660 + +0.4
4,167,660 + +0.2
4,167,661 - -1.8
4,167,661 - -0.6
4,167,661 - -0.0
4,167,661 - -0.7
4,167,661 - +0.3
4,167,661 - -1.1
4,167,661 - +0.1
4,167,661 - -0.0
4,167,661 - -0.2
4,167,661 - -0.3
4,167,661 - +0.3
4,167,661 - +0.8
4,167,664 + -0.8
4,167,664 + +1.7
4,167,664 + +0.5
4,167,752 + Sama_3536 0.13 -0.7
4,167,752 + Sama_3536 0.13 -1.2
4,167,752 + Sama_3536 0.13 +0.6
4,167,752 + Sama_3536 0.13 +0.4
4,167,753 - Sama_3536 0.14 +0.0
4,167,753 - Sama_3536 0.14 -0.7
4,167,753 - Sama_3536 0.14 -0.4
4,167,753 - Sama_3536 0.14 +2.1
4,167,753 - Sama_3536 0.14 -1.8
4,167,753 - Sama_3536 0.14 -0.9
4,167,782 + Sama_3536 0.18 -1.2
4,167,783 - Sama_3536 0.18 -0.4
4,167,783 - Sama_3536 0.18 -0.0
4,167,790 + Sama_3536 0.19 -0.6
4,167,833 + Sama_3536 0.25 +0.9
4,167,834 - Sama_3536 0.26 +1.4
4,167,834 - Sama_3536 0.26 -0.4
4,167,834 - Sama_3536 0.26 +0.3
4,167,834 - Sama_3536 0.26 -0.2
4,167,834 - Sama_3536 0.26 -0.5
4,167,901 + Sama_3536 0.36 +0.0
4,167,901 + Sama_3536 0.36 -1.4
4,167,901 + Sama_3536 0.36 -1.7
4,167,902 - Sama_3536 0.36 -0.3
4,167,902 - Sama_3536 0.36 +0.0
4,167,902 - Sama_3536 0.36 -1.1
4,167,902 - Sama_3536 0.36 -0.2
4,167,904 + Sama_3536 0.36 -0.5
4,167,904 + Sama_3536 0.36 +0.3
4,167,905 - Sama_3536 0.36 -0.6
4,167,905 - Sama_3536 0.36 +0.6
4,167,960 + Sama_3536 0.44 +1.2
4,167,960 + Sama_3536 0.44 -0.7
4,167,960 + Sama_3536 0.44 -0.1
4,167,960 + Sama_3536 0.44 -0.8
4,167,960 + Sama_3536 0.44 +0.3
4,167,985 + Sama_3536 0.48 +1.2
4,167,985 + Sama_3536 0.48 +0.5
4,167,985 + Sama_3536 0.48 +0.5
4,167,985 + Sama_3536 0.48 -0.5
4,167,985 + Sama_3536 0.48 +0.2
4,167,986 - Sama_3536 0.48 +0.1
4,167,986 - Sama_3536 0.48 +0.6
4,167,986 - Sama_3536 0.48 -1.3
4,167,986 - Sama_3536 0.48 -0.0
4,167,986 - Sama_3536 0.48 -2.4
4,167,986 - Sama_3536 0.48 +1.3
4,167,992 + Sama_3536 0.49 -0.1
4,167,992 + Sama_3536 0.49 -0.1
4,167,993 - Sama_3536 0.49 -1.6
4,168,055 + Sama_3536 0.58 -0.1
4,168,056 - Sama_3536 0.59 +0.2
4,168,056 - Sama_3536 0.59 +2.7
4,168,056 - Sama_3536 0.59 -0.8
4,168,063 + Sama_3536 0.60 -0.2
4,168,063 + Sama_3536 0.60 -0.4
4,168,063 + Sama_3536 0.60 +0.8
4,168,063 + Sama_3536 0.60 +0.1
4,168,134 - Sama_3536 0.70 -0.5
4,168,151 - Sama_3536 0.73 +1.5
4,168,177 + Sama_3536 0.76 -0.1
4,168,177 + Sama_3536 0.76 -0.5
4,168,178 - Sama_3536 0.77 +1.0
4,168,211 + Sama_3536 0.81 -0.8
4,168,236 + Sama_3536 0.85 -0.8
4,168,236 + Sama_3536 0.85 +0.4
4,168,236 + Sama_3536 0.85 +1.1
4,168,236 + Sama_3536 0.85 -1.1
4,168,236 + Sama_3536 0.85 +0.5
4,168,236 + Sama_3536 0.85 +0.5
4,168,274 + -0.6
4,168,274 + +0.2
4,168,274 + +0.0
4,168,275 - -0.2
4,168,373 + +1.2
4,168,373 + -0.3
4,168,373 + -0.2
4,168,373 + -0.1
4,168,373 + -0.3
4,168,373 + +0.2
4,168,373 + -0.2
4,168,374 - -0.8
4,168,374 - -1.5
4,168,374 - -0.4
4,168,374 - -0.0
4,168,374 - -0.0
4,168,374 - -0.1
4,168,374 - -0.6
4,168,374 - -0.7
4,168,456 + Sama_3537 0.12 -0.0
4,168,456 + Sama_3537 0.12 +0.6
4,168,457 - Sama_3537 0.13 +0.0
4,168,536 + Sama_3537 0.19 +0.3
4,168,536 + Sama_3537 0.19 +0.8
4,168,537 - Sama_3537 0.19 +0.6
4,168,537 - Sama_3537 0.19 -1.4
4,168,588 + Sama_3537 0.24 -0.3
4,168,588 + Sama_3537 0.24 -0.8
4,168,588 + Sama_3537 0.24 +0.2
4,168,588 + Sama_3537 0.24 -1.6
4,168,588 + Sama_3537 0.24 +0.0
4,168,588 + Sama_3537 0.24 +0.7
4,168,588 + Sama_3537 0.24 +0.6
4,168,589 - Sama_3537 0.24 +0.1
4,168,589 - Sama_3537 0.24 -0.0
4,168,589 - Sama_3537 0.24 -0.8
4,168,589 - Sama_3537 0.24 -0.6
4,168,589 - Sama_3537 0.24 +0.1
4,168,589 - Sama_3537 0.24 +0.6
4,168,589 - Sama_3537 0.24 +0.7
4,168,593 + Sama_3537 0.24 +0.7
4,168,593 + Sama_3537 0.24 -0.7
4,168,611 + Sama_3537 0.26 +0.6
4,168,611 + Sama_3537 0.26 -0.5
4,168,611 + Sama_3537 0.26 +0.2
4,168,611 + Sama_3537 0.26 +0.7
4,168,611 + Sama_3537 0.26 +0.8
4,168,612 - Sama_3537 0.26 +0.1
4,168,612 - Sama_3537 0.26 +0.9
4,168,612 - Sama_3537 0.26 -0.9
4,168,612 - Sama_3537 0.26 +1.0
4,168,612 - Sama_3537 0.26 -0.2
4,168,612 - Sama_3537 0.26 +0.5
4,168,618 + Sama_3537 0.26 -0.4
4,168,618 + Sama_3537 0.26 +1.2
4,168,619 - Sama_3537 0.26 -0.8
4,168,621 + Sama_3537 0.26 +0.9
4,168,621 + Sama_3537 0.26 -0.2
4,168,622 - Sama_3537 0.26 -1.1
4,168,622 - Sama_3537 0.26 -1.2

Or see this region's nucleotide sequence