Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3533 and Sama_3534 are separated by 19 nucleotides Sama_3534 and Sama_3535 are separated by 49 nucleotides Sama_3535 and Sama_3536 are separated by 3 nucleotides Sama_3536 and Sama_3537 overlap by 27 nucleotides
Sama_3533: Sama_3533 - hypothetical protein (RefSeq), at 4,165,127 to 4,165,651
_3533
Sama_3534: Sama_3534 - response regulator receiver protein (RefSeq), at 4,165,671 to 4,166,348
_3534
Sama_3535: Sama_3535 - sensor histidine kinase (RefSeq), at 4,166,398 to 4,167,657
_3535
Sama_3536: Sama_3536 - pseudouridine synthase RluA-like protein (RefSeq), at 4,167,661 to 4,168,335
_3536
Sama_3537: Sama_3537 - GGDEF family protein (RefSeq), at 4,168,309 to 4,169,490
_3537
Position (kb)
4166
4167
4168 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4165.402 kb on + strand, within Sama_3533 at 4165.618 kb on + strand at 4165.659 kb on + strand at 4165.659 kb on + strand at 4166.346 kb on + strand at 4166.346 kb on + strand at 4167.655 kb on + strand at 4167.655 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.660 kb on + strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.661 kb on - strand at 4167.664 kb on + strand at 4167.664 kb on + strand at 4167.664 kb on + strand at 4167.752 kb on + strand, within Sama_3536 at 4167.752 kb on + strand, within Sama_3536 at 4167.752 kb on + strand, within Sama_3536 at 4167.752 kb on + strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.753 kb on - strand, within Sama_3536 at 4167.782 kb on + strand, within Sama_3536 at 4167.783 kb on - strand, within Sama_3536 at 4167.783 kb on - strand, within Sama_3536 at 4167.790 kb on + strand, within Sama_3536 at 4167.833 kb on + strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.834 kb on - strand, within Sama_3536 at 4167.901 kb on + strand, within Sama_3536 at 4167.901 kb on + strand, within Sama_3536 at 4167.901 kb on + strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.902 kb on - strand, within Sama_3536 at 4167.904 kb on + strand, within Sama_3536 at 4167.904 kb on + strand, within Sama_3536 at 4167.905 kb on - strand, within Sama_3536 at 4167.905 kb on - strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.960 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.985 kb on + strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.986 kb on - strand, within Sama_3536 at 4167.992 kb on + strand, within Sama_3536 at 4167.992 kb on + strand, within Sama_3536 at 4167.993 kb on - strand, within Sama_3536 at 4168.055 kb on + strand, within Sama_3536 at 4168.056 kb on - strand, within Sama_3536 at 4168.056 kb on - strand, within Sama_3536 at 4168.056 kb on - strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.063 kb on + strand, within Sama_3536 at 4168.134 kb on - strand, within Sama_3536 at 4168.151 kb on - strand, within Sama_3536 at 4168.177 kb on + strand, within Sama_3536 at 4168.177 kb on + strand, within Sama_3536 at 4168.178 kb on - strand, within Sama_3536 at 4168.211 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.236 kb on + strand, within Sama_3536 at 4168.274 kb on + strand at 4168.274 kb on + strand at 4168.274 kb on + strand at 4168.275 kb on - strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.373 kb on + strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.374 kb on - strand at 4168.456 kb on + strand, within Sama_3537 at 4168.456 kb on + strand, within Sama_3537 at 4168.457 kb on - strand, within Sama_3537 at 4168.536 kb on + strand, within Sama_3537 at 4168.536 kb on + strand, within Sama_3537 at 4168.537 kb on - strand, within Sama_3537 at 4168.537 kb on - strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.588 kb on + strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.589 kb on - strand, within Sama_3537 at 4168.593 kb on + strand, within Sama_3537 at 4168.593 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.611 kb on + strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.612 kb on - strand, within Sama_3537 at 4168.618 kb on + strand, within Sama_3537 at 4168.618 kb on + strand, within Sama_3537 at 4168.619 kb on - strand, within Sama_3537 at 4168.621 kb on + strand, within Sama_3537 at 4168.621 kb on + strand, within Sama_3537 at 4168.622 kb on - strand, within Sama_3537 at 4168.622 kb on - strand, within Sama_3537
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 4,165,402 + Sama_3533 0.52 -0.4 4,165,618 + +0.2 4,165,659 + -1.9 4,165,659 + -0.4 4,166,346 + +1.8 4,166,346 + -0.2 4,167,655 + -0.0 4,167,655 + -0.4 4,167,660 + +0.7 4,167,660 + -0.2 4,167,660 + -0.1 4,167,660 + -0.5 4,167,660 + +0.0 4,167,660 + -1.0 4,167,660 + +0.4 4,167,660 + +0.2 4,167,661 - -1.8 4,167,661 - -0.6 4,167,661 - -0.0 4,167,661 - -0.7 4,167,661 - +0.3 4,167,661 - -1.1 4,167,661 - +0.1 4,167,661 - -0.0 4,167,661 - -0.2 4,167,661 - -0.3 4,167,661 - +0.3 4,167,661 - +0.8 4,167,664 + -0.8 4,167,664 + +1.7 4,167,664 + +0.5 4,167,752 + Sama_3536 0.13 -0.7 4,167,752 + Sama_3536 0.13 -1.2 4,167,752 + Sama_3536 0.13 +0.6 4,167,752 + Sama_3536 0.13 +0.4 4,167,753 - Sama_3536 0.14 +0.0 4,167,753 - Sama_3536 0.14 -0.7 4,167,753 - Sama_3536 0.14 -0.4 4,167,753 - Sama_3536 0.14 +2.1 4,167,753 - Sama_3536 0.14 -1.8 4,167,753 - Sama_3536 0.14 -0.9 4,167,782 + Sama_3536 0.18 -1.2 4,167,783 - Sama_3536 0.18 -0.4 4,167,783 - Sama_3536 0.18 -0.0 4,167,790 + Sama_3536 0.19 -0.6 4,167,833 + Sama_3536 0.25 +0.9 4,167,834 - Sama_3536 0.26 +1.4 4,167,834 - Sama_3536 0.26 -0.4 4,167,834 - Sama_3536 0.26 +0.3 4,167,834 - Sama_3536 0.26 -0.2 4,167,834 - Sama_3536 0.26 -0.5 4,167,901 + Sama_3536 0.36 +0.0 4,167,901 + Sama_3536 0.36 -1.4 4,167,901 + Sama_3536 0.36 -1.7 4,167,902 - Sama_3536 0.36 -0.3 4,167,902 - Sama_3536 0.36 +0.0 4,167,902 - Sama_3536 0.36 -1.1 4,167,902 - Sama_3536 0.36 -0.2 4,167,904 + Sama_3536 0.36 -0.5 4,167,904 + Sama_3536 0.36 +0.3 4,167,905 - Sama_3536 0.36 -0.6 4,167,905 - Sama_3536 0.36 +0.6 4,167,960 + Sama_3536 0.44 +1.2 4,167,960 + Sama_3536 0.44 -0.7 4,167,960 + Sama_3536 0.44 -0.1 4,167,960 + Sama_3536 0.44 -0.8 4,167,960 + Sama_3536 0.44 +0.3 4,167,985 + Sama_3536 0.48 +1.2 4,167,985 + Sama_3536 0.48 +0.5 4,167,985 + Sama_3536 0.48 +0.5 4,167,985 + Sama_3536 0.48 -0.5 4,167,985 + Sama_3536 0.48 +0.2 4,167,986 - Sama_3536 0.48 +0.1 4,167,986 - Sama_3536 0.48 +0.6 4,167,986 - Sama_3536 0.48 -1.3 4,167,986 - Sama_3536 0.48 -0.0 4,167,986 - Sama_3536 0.48 -2.4 4,167,986 - Sama_3536 0.48 +1.3 4,167,992 + Sama_3536 0.49 -0.1 4,167,992 + Sama_3536 0.49 -0.1 4,167,993 - Sama_3536 0.49 -1.6 4,168,055 + Sama_3536 0.58 -0.1 4,168,056 - Sama_3536 0.59 +0.2 4,168,056 - Sama_3536 0.59 +2.7 4,168,056 - Sama_3536 0.59 -0.8 4,168,063 + Sama_3536 0.60 -0.2 4,168,063 + Sama_3536 0.60 -0.4 4,168,063 + Sama_3536 0.60 +0.8 4,168,063 + Sama_3536 0.60 +0.1 4,168,134 - Sama_3536 0.70 -0.5 4,168,151 - Sama_3536 0.73 +1.5 4,168,177 + Sama_3536 0.76 -0.1 4,168,177 + Sama_3536 0.76 -0.5 4,168,178 - Sama_3536 0.77 +1.0 4,168,211 + Sama_3536 0.81 -0.8 4,168,236 + Sama_3536 0.85 -0.8 4,168,236 + Sama_3536 0.85 +0.4 4,168,236 + Sama_3536 0.85 +1.1 4,168,236 + Sama_3536 0.85 -1.1 4,168,236 + Sama_3536 0.85 +0.5 4,168,236 + Sama_3536 0.85 +0.5 4,168,274 + -0.6 4,168,274 + +0.2 4,168,274 + +0.0 4,168,275 - -0.2 4,168,373 + +1.2 4,168,373 + -0.3 4,168,373 + -0.2 4,168,373 + -0.1 4,168,373 + -0.3 4,168,373 + +0.2 4,168,373 + -0.2 4,168,374 - -0.8 4,168,374 - -1.5 4,168,374 - -0.4 4,168,374 - -0.0 4,168,374 - -0.0 4,168,374 - -0.1 4,168,374 - -0.6 4,168,374 - -0.7 4,168,456 + Sama_3537 0.12 -0.0 4,168,456 + Sama_3537 0.12 +0.6 4,168,457 - Sama_3537 0.13 +0.0 4,168,536 + Sama_3537 0.19 +0.3 4,168,536 + Sama_3537 0.19 +0.8 4,168,537 - Sama_3537 0.19 +0.6 4,168,537 - Sama_3537 0.19 -1.4 4,168,588 + Sama_3537 0.24 -0.3 4,168,588 + Sama_3537 0.24 -0.8 4,168,588 + Sama_3537 0.24 +0.2 4,168,588 + Sama_3537 0.24 -1.6 4,168,588 + Sama_3537 0.24 +0.0 4,168,588 + Sama_3537 0.24 +0.7 4,168,588 + Sama_3537 0.24 +0.6 4,168,589 - Sama_3537 0.24 +0.1 4,168,589 - Sama_3537 0.24 -0.0 4,168,589 - Sama_3537 0.24 -0.8 4,168,589 - Sama_3537 0.24 -0.6 4,168,589 - Sama_3537 0.24 +0.1 4,168,589 - Sama_3537 0.24 +0.6 4,168,589 - Sama_3537 0.24 +0.7 4,168,593 + Sama_3537 0.24 +0.7 4,168,593 + Sama_3537 0.24 -0.7 4,168,611 + Sama_3537 0.26 +0.6 4,168,611 + Sama_3537 0.26 -0.5 4,168,611 + Sama_3537 0.26 +0.2 4,168,611 + Sama_3537 0.26 +0.7 4,168,611 + Sama_3537 0.26 +0.8 4,168,612 - Sama_3537 0.26 +0.1 4,168,612 - Sama_3537 0.26 +0.9 4,168,612 - Sama_3537 0.26 -0.9 4,168,612 - Sama_3537 0.26 +1.0 4,168,612 - Sama_3537 0.26 -0.2 4,168,612 - Sama_3537 0.26 +0.5 4,168,618 + Sama_3537 0.26 -0.4 4,168,618 + Sama_3537 0.26 +1.2 4,168,619 - Sama_3537 0.26 -0.8 4,168,621 + Sama_3537 0.26 +0.9 4,168,621 + Sama_3537 0.26 -0.2 4,168,622 - Sama_3537 0.26 -1.1 4,168,622 - Sama_3537 0.26 -1.2
Or see this region's nucleotide sequence