Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1978 and Sama_1979 are separated by 161 nucleotides Sama_1979 and Sama_1980 are separated by 158 nucleotides Sama_1980 and Sama_1981 are separated by 11 nucleotides Sama_1981 and Sama_1982 are separated by 57 nucleotides
Sama_1978: Sama_1978 - 3-oxoacyl-(acyl-carrier-protein) synthase II (RefSeq), at 2,406,797 to 2,408,035
_1978
Sama_1979: Sama_1979 - acyl carrier protein (RefSeq), at 2,408,197 to 2,408,430
_1979
Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335
_1980
Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273
_1981
Sama_1982: Sama_1982 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,410,331 to 2,411,290
_1982
Position (kb)
2408
2409
2410 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2407.703 kb on - strand, within Sama_1978 at 2407.807 kb on - strand, within Sama_1978 at 2407.852 kb on - strand, within Sama_1978 at 2408.058 kb on - strand at 2408.058 kb on - strand at 2408.068 kb on - strand at 2408.524 kb on - strand at 2408.543 kb on - strand at 2408.552 kb on + strand at 2408.552 kb on + strand at 2408.553 kb on - strand at 2409.349 kb on - strand at 2409.375 kb on - strand at 2409.375 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 2,407,703 - Sama_1978 0.73 -3.0 2,407,807 - Sama_1978 0.82 -1.8 2,407,852 - Sama_1978 0.85 -1.6 2,408,058 - -0.3 2,408,058 - -2.7 2,408,068 - +0.7 2,408,524 - +0.9 2,408,543 - +0.3 2,408,552 + +2.0 2,408,552 + +0.9 2,408,553 - +1.0 2,409,349 - -0.8 2,409,375 - -0.1 2,409,375 - -0.4
Or see this region's nucleotide sequence