Strain Fitness in Shewanella amazonensis SB2B around Sama_1979

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1978 and Sama_1979 are separated by 161 nucleotidesSama_1979 and Sama_1980 are separated by 158 nucleotidesSama_1980 and Sama_1981 are separated by 11 nucleotides Sama_1978: Sama_1978 - 3-oxoacyl-(acyl-carrier-protein) synthase II (RefSeq), at 2,406,797 to 2,408,035 _1978 Sama_1979: Sama_1979 - acyl carrier protein (RefSeq), at 2,408,197 to 2,408,430 _1979 Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335 _1980 Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273 _1981 Position (kb) 2408 2409Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2407.426 kb on + strand, within Sama_1978at 2407.482 kb on - strand, within Sama_1978at 2407.482 kb on - strand, within Sama_1978at 2407.498 kb on - strand, within Sama_1978at 2407.532 kb on + strand, within Sama_1978at 2407.584 kb on + strand, within Sama_1978at 2407.585 kb on - strand, within Sama_1978at 2407.585 kb on - strand, within Sama_1978at 2407.703 kb on - strand, within Sama_1978at 2407.807 kb on - strand, within Sama_1978at 2407.852 kb on - strand, within Sama_1978at 2408.058 kb on - strandat 2408.058 kb on - strandat 2408.068 kb on - strandat 2408.524 kb on - strandat 2408.543 kb on - strandat 2408.552 kb on + strandat 2408.552 kb on + strandat 2408.553 kb on - strandat 2409.349 kb on - strandat 2409.375 kb on - strandat 2409.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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2,407,426 + Sama_1978 0.51 -1.6
2,407,482 - Sama_1978 0.55 -1.4
2,407,482 - Sama_1978 0.55 -1.6
2,407,498 - Sama_1978 0.57 -1.8
2,407,532 + Sama_1978 0.59 -2.6
2,407,584 + Sama_1978 0.64 -2.3
2,407,585 - Sama_1978 0.64 -2.7
2,407,585 - Sama_1978 0.64 -1.3
2,407,703 - Sama_1978 0.73 -3.0
2,407,807 - Sama_1978 0.82 -1.8
2,407,852 - Sama_1978 0.85 -1.6
2,408,058 - -0.3
2,408,058 - -2.7
2,408,068 - +0.7
2,408,524 - +0.9
2,408,543 - +0.3
2,408,552 + +2.0
2,408,552 + +0.9
2,408,553 - +1.0
2,409,349 - -0.8
2,409,375 - -0.1
2,409,375 - -0.4

Or see this region's nucleotide sequence