Strain Fitness in Shewanella amazonensis SB2B around Sama_1925

Experiment: Bacitracin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.125 mg/ml
2,353,208	+				+0.6
2,353,208	+				-0.9
2,353,208	+				-1.6
2,353,209	-				-0.6
2,353,273	+				-1.2
2,353,333	+				+0.6
2,353,333	+				-0.0
2,353,334	-				+0.7
2,353,338	+				+0.3
2,353,339	-				-0.6
2,353,366	-				-0.3
2,353,381	+				+0.4
2,353,383	+				-0.6
2,353,383	+				+0.6
2,353,383	+				+1.0
2,353,383	+				-1.0
2,353,386	+				+0.7
2,353,387	-				-2.2
2,353,389	+				+0.7
2,353,411	-				-1.1
2,353,411	-				-2.0
2,353,419	+				+1.0
2,353,420	-				+0.7
2,353,494	+				-0.6
2,353,495	-				-1.9
2,353,496	+				-2.0
2,353,497	-				-0.7
2,353,497	-				-0.7
2,353,497	-				-0.6
2,353,586	+				-2.4
2,353,610	+	nhaB	Sama_1925	0.11	-1.6
2,353,690	+	nhaB	Sama_1925	0.16	-0.6
2,353,718	-	nhaB	Sama_1925	0.18	-2.7
2,353,737	-	nhaB	Sama_1925	0.19	-1.7
2,353,737	-	nhaB	Sama_1925	0.19	-1.5
2,353,752	+	nhaB	Sama_1925	0.20	-1.6
2,353,752	+	nhaB	Sama_1925	0.20	-1.1
2,353,758	-	nhaB	Sama_1925	0.20	-0.9
2,353,804	+	nhaB	Sama_1925	0.23	-0.5
2,353,804	+	nhaB	Sama_1925	0.23	-0.5
2,353,804	+	nhaB	Sama_1925	0.23	-0.3
2,353,804	+	nhaB	Sama_1925	0.23	+0.2
2,353,804	+	nhaB	Sama_1925	0.23	-1.6
2,353,822	+	nhaB	Sama_1925	0.24	-2.5
2,353,823	-	nhaB	Sama_1925	0.25	-1.6
2,353,823	-	nhaB	Sama_1925	0.25	-0.2
2,353,823	-	nhaB	Sama_1925	0.25	-0.1
2,353,877	+	nhaB	Sama_1925	0.28	-1.9
2,353,878	-	nhaB	Sama_1925	0.28	-1.3
2,353,878	-	nhaB	Sama_1925	0.28	-1.4
2,353,898	+	nhaB	Sama_1925	0.29	-1.1
2,353,898	+	nhaB	Sama_1925	0.29	-0.0
2,353,899	-	nhaB	Sama_1925	0.29	-2.9
2,353,917	+	nhaB	Sama_1925	0.30	-3.0
2,353,918	-	nhaB	Sama_1925	0.30	-0.4
2,353,922	+	nhaB	Sama_1925	0.31	-1.7
2,353,922	+	nhaB	Sama_1925	0.31	-1.6
2,353,922	+	nhaB	Sama_1925	0.31	-0.1
2,353,922	+	nhaB	Sama_1925	0.31	-0.6
2,353,922	+	nhaB	Sama_1925	0.31	-1.3
2,353,922	+	nhaB	Sama_1925	0.31	-1.3
2,353,922	+	nhaB	Sama_1925	0.31	-2.6
2,353,923	-	nhaB	Sama_1925	0.31	-2.7
2,353,923	-	nhaB	Sama_1925	0.31	-1.6
2,353,926	+	nhaB	Sama_1925	0.31	-1.1
2,353,926	+	nhaB	Sama_1925	0.31	-0.9
2,353,926	+	nhaB	Sama_1925	0.31	-1.3
2,353,926	+	nhaB	Sama_1925	0.31	-1.5
2,353,926	+	nhaB	Sama_1925	0.31	-0.3
2,353,926	+	nhaB	Sama_1925	0.31	-2.6
2,353,927	-	nhaB	Sama_1925	0.31	+0.2
2,353,931	+	nhaB	Sama_1925	0.31	-0.6
2,353,931	+	nhaB	Sama_1925	0.31	-1.1
2,353,932	-	nhaB	Sama_1925	0.31	-1.5
2,354,264	-	nhaB	Sama_1925	0.52	-1.8
2,354,264	-	nhaB	Sama_1925	0.52	-0.4
2,354,264	-	nhaB	Sama_1925	0.52	+0.7
2,354,267	+	nhaB	Sama_1925	0.52	-1.2
2,354,267	+	nhaB	Sama_1925	0.52	+0.1
2,354,268	-	nhaB	Sama_1925	0.53	-2.9
2,354,292	+	nhaB	Sama_1925	0.54	-2.1
2,354,293	-	nhaB	Sama_1925	0.54	-1.3
2,354,315	+	nhaB	Sama_1925	0.56	-2.1
2,354,315	+	nhaB	Sama_1925	0.56	-2.8
2,354,368	+	nhaB	Sama_1925	0.59	-1.9
2,354,369	-	nhaB	Sama_1925	0.59	-0.3
2,354,395	+	nhaB	Sama_1925	0.61	-1.5
2,354,395	+	nhaB	Sama_1925	0.61	-1.7
2,354,447	+	nhaB	Sama_1925	0.64	-0.3
2,354,489	-	nhaB	Sama_1925	0.66	-1.5
2,354,534	+	nhaB	Sama_1925	0.69	+0.7
2,354,537	+	nhaB	Sama_1925	0.70	-3.6
2,354,537	+	nhaB	Sama_1925	0.70	-2.0
2,354,537	+	nhaB	Sama_1925	0.70	-1.4
2,354,538	-	nhaB	Sama_1925	0.70	-2.2
2,354,538	-	nhaB	Sama_1925	0.70	-0.9
2,354,538	-	nhaB	Sama_1925	0.70	-2.3
2,354,584	-	nhaB	Sama_1925	0.72	+0.0
2,354,596	+	nhaB	Sama_1925	0.73	-1.5
2,354,597	-	nhaB	Sama_1925	0.73	-1.7
2,354,597	-	nhaB	Sama_1925	0.73	-1.8
2,354,606	+	nhaB	Sama_1925	0.74	-0.6
2,354,613	+	nhaB	Sama_1925	0.74	+0.7
2,354,614	-	nhaB	Sama_1925	0.74	-1.0
2,354,671	-	nhaB	Sama_1925	0.78	-1.3
2,354,671	-	nhaB	Sama_1925	0.78	-0.9
2,354,672	+	nhaB	Sama_1925	0.78	-0.9
2,354,673	-	nhaB	Sama_1925	0.78	-0.0
2,354,699	+	nhaB	Sama_1925	0.80	-1.6
2,354,699	+	nhaB	Sama_1925	0.80	-4.2
2,354,700	-	nhaB	Sama_1925	0.80	-0.6
2,354,848	-	nhaB	Sama_1925	0.89	-1.9
2,354,878	-				-2.2
2,354,884	+				-1.2
2,354,884	+				-2.1
2,354,884	+				-0.0
2,354,884	+				-1.6
2,354,884	+				-1.1
2,354,885	-				-1.2
2,354,885	-				-0.9
2,354,894	+				+0.3
2,354,895	-				+0.7
2,354,899	+				+0.1
2,354,936	+				-0.3
2,354,947	-				-0.4
2,354,953	-				-0.9
2,354,953	-				-2.6
2,354,969	+				-0.6
2,354,969	+				-1.0
2,355,019	-				-0.0
2,355,019	-				+0.7
2,355,041	+				+0.5
2,355,042	-				-0.6
2,355,042	-				-1.3
2,355,042	-				-1.0
2,355,042	-				-0.8
2,355,050	-				-1.1
2,355,065	+				-1.4
2,355,120	+				+0.7
2,355,209	-		Sama_1926	0.17	-1.6
2,355,222	+		Sama_1926	0.20	-0.7
2,355,222	+		Sama_1926	0.20	-1.3
2,355,223	-		Sama_1926	0.20	-0.8
2,355,223	-		Sama_1926	0.20	+0.1
2,355,249	+		Sama_1926	0.25	-0.3
2,355,249	+		Sama_1926	0.25	+0.7
2,355,249	+		Sama_1926	0.25	-0.5
2,355,250	-		Sama_1926	0.25	-1.0
2,355,250	-		Sama_1926	0.25	-0.3
2,355,250	-		Sama_1926	0.25	+0.3
2,355,250	-		Sama_1926	0.25	-1.5
2,355,250	-		Sama_1926	0.25	+0.1
2,355,293	+		Sama_1926	0.34	-1.8
2,355,294	-		Sama_1926	0.34	+0.2
2,355,294	-		Sama_1926	0.34	-2.1
2,355,318	+		Sama_1926	0.39	+0.4
2,355,319	-		Sama_1926	0.39	-0.3
2,355,325	-		Sama_1926	0.40	-1.6
2,355,375	+		Sama_1926	0.50	+2.3
2,355,376	-		Sama_1926	0.50	-0.1
2,355,376	-		Sama_1926	0.50	+0.3
2,355,399	+		Sama_1926	0.55	+0.2
2,355,493	-		Sama_1926	0.73	+1.5
2,355,504	+		Sama_1926	0.75	-0.9
2,355,504	+		Sama_1926	0.75	-1.0
2,355,504	+		Sama_1926	0.75	-1.9
2,355,505	-		Sama_1926	0.75	-0.2
2,355,505	-		Sama_1926	0.75	-0.1
2,355,505	-		Sama_1926	0.75	-1.6
2,355,561	-		Sama_1926	0.86	-0.9
2,355,561	-		Sama_1926	0.86	-0.7
2,355,600	+				+0.7
2,355,649	+				+1.1
2,355,649	+				-0.9
2,355,694	-				+0.0
2,355,694	-				+0.7
2,355,720	+				+1.5
2,355,720	+				+0.9
2,355,721	-				-0.3
2,355,739	-				+0.3
2,355,753	-		Sama_1927	0.11	-0.7
2,355,796	-		Sama_1927	0.20	-2.7
2,355,879	-		Sama_1927	0.39	+1.3
2,355,889	-		Sama_1927	0.41	+0.1
2,355,918	+		Sama_1927	0.48	+1.2
2,355,928	-		Sama_1927	0.50	+0.3
2,355,928	-		Sama_1927	0.50	+0.5
2,355,928	-		Sama_1927	0.50	-0.0
2,355,928	-		Sama_1927	0.50	+0.2
2,355,928	-		Sama_1927	0.50	+0.1
2,355,955	-		Sama_1927	0.56	-0.3
2,355,968	+		Sama_1927	0.59	+1.0
2,356,006	-		Sama_1927	0.68	+1.0
2,356,006	-		Sama_1927	0.68	-1.3
2,356,006	-		Sama_1927	0.68	+0.7