Strain Fitness in Shewanella amazonensis SB2B around Sama_1239

Experiment: Bacitracin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.125 mg/ml
1,522,167	+				+2.1
1,522,190	+				+0.8
1,522,190	+				-0.4
1,522,190	+				-0.2
1,522,190	+				-0.3
1,522,190	+				+0.8
1,522,191	-				-0.6
1,522,192	+				-1.8
1,522,192	+				-1.8
1,522,192	+				-2.3
1,522,192	+				-1.0
1,522,192	+				-1.1
1,522,192	+				-1.5
1,522,192	+				-1.5
1,522,193	-				-1.4
1,522,241	+				-0.8
1,522,483	+		Sama_1237	0.40	-0.0
1,522,502	+		Sama_1237	0.43	-2.5
1,522,514	+		Sama_1237	0.45	-2.0
1,522,514	+		Sama_1237	0.45	-2.0
1,522,550	+		Sama_1237	0.50	-0.6
1,522,550	+		Sama_1237	0.50	-1.2
1,522,573	+		Sama_1237	0.53	-2.6
1,522,690	+		Sama_1237	0.70	-1.9
1,522,720	-		Sama_1237	0.75	-3.7
1,522,890	+				-2.0
1,522,916	+				-3.0
1,522,916	+				-3.9
1,522,916	+				-1.2
1,522,930	+				-0.2
1,522,930	+				-4.4
1,522,930	+				-3.8
1,522,930	+				-2.0
1,522,930	+				-0.8
1,522,930	+				-3.1
1,522,930	+				-1.8
1,522,930	+				-3.7
1,522,930	+				-3.1
1,522,930	+				-2.3
1,522,930	+				-5.2
1,522,931	-				-1.5
1,522,931	-				-3.2
1,522,931	-				-0.8
1,522,931	-				-3.3
1,522,946	+	pspB	Sama_1238	0.12	-3.4
1,522,949	+	pspB	Sama_1238	0.13	-1.9
1,522,949	+	pspB	Sama_1238	0.13	-2.5
1,522,963	+	pspB	Sama_1238	0.19	-1.5
1,522,964	-	pspB	Sama_1238	0.20	-4.4
1,523,171	-				-3.8
1,523,224	+		Sama_1239	0.20	-2.2
1,523,224	+		Sama_1239	0.20	-3.4
1,523,225	-		Sama_1239	0.21	-3.3
1,523,292	+		Sama_1239	0.38	-2.6
1,523,292	+		Sama_1239	0.38	-2.0
1,523,292	+		Sama_1239	0.38	-3.3
1,523,292	+		Sama_1239	0.38	-3.1
1,523,293	-		Sama_1239	0.38	-3.6
1,523,299	+		Sama_1239	0.39	-3.6
1,523,308	+		Sama_1239	0.42	-4.0
1,523,308	+		Sama_1239	0.42	-3.1
1,523,308	+		Sama_1239	0.42	-2.5
1,523,308	+		Sama_1239	0.42	-2.4
1,523,309	-		Sama_1239	0.42	-3.9
1,523,506	+				-1.8
1,523,506	+				-4.6
1,523,506	+				-2.5
1,523,506	+				-3.1
1,523,506	+				-4.4
1,523,507	-				-3.1
1,523,507	-				-1.8
1,523,507	-				-2.6
1,523,507	-				-2.6
1,523,513	+				-2.5
1,523,514	-				-2.0
1,523,529	+				-0.8
1,523,536	+				-1.8
1,523,536	+				-1.9
1,523,536	+				-0.7
1,523,537	-				-0.4
1,523,537	-				-1.4
1,523,537	-				-1.2
1,523,542	-				+0.2
1,523,542	-				+0.8
1,523,545	+				-0.4
1,523,546	-				+0.5
1,523,587	-				+0.1
1,523,587	-				-0.3
1,523,626	+				+1.4
1,523,626	+				-1.2
1,523,626	+				+0.3
1,523,627	-				-0.8
1,523,627	-				-0.8
1,523,627	-				+1.3
1,523,648	-				-0.7
1,523,700	+				-0.8
1,523,700	+				-1.0
1,523,701	-				-0.2
1,523,795	-		Sama_1240	0.12	-1.5
1,523,941	+		Sama_1240	0.22	+0.1
1,524,047	+		Sama_1240	0.30	-1.0
1,524,072	+		Sama_1240	0.31	-0.1
1,524,093	-		Sama_1240	0.33	+0.1
1,524,163	+		Sama_1240	0.38	-0.4
1,524,163	+		Sama_1240	0.38	+0.1
1,524,164	-		Sama_1240	0.38	-0.4
1,524,164	-		Sama_1240	0.38	-0.2
1,524,201	+		Sama_1240	0.40	-0.4
1,524,207	-		Sama_1240	0.41	+0.8
1,524,245	+		Sama_1240	0.43	+0.4
1,524,275	+		Sama_1240	0.46	-0.3
1,524,275	+		Sama_1240	0.46	+0.7
1,524,275	+		Sama_1240	0.46	-0.2
1,524,279	-		Sama_1240	0.46	-0.3
1,524,279	-		Sama_1240	0.46	+0.3
1,524,318	+		Sama_1240	0.49	-0.9
1,524,319	-		Sama_1240	0.49	-0.9
1,524,373	+		Sama_1240	0.52	+1.1
1,524,373	+		Sama_1240	0.52	-1.0
1,524,373	+		Sama_1240	0.52	+0.8
1,524,373	+		Sama_1240	0.52	-0.2
1,524,373	+		Sama_1240	0.52	-0.5
1,524,373	+		Sama_1240	0.52	+0.9
1,524,374	-		Sama_1240	0.53	-0.2
1,524,374	-		Sama_1240	0.53	-0.8
1,524,374	-		Sama_1240	0.53	+0.6
1,524,407	+		Sama_1240	0.55	-0.0
1,524,407	+		Sama_1240	0.55	-0.3
1,524,438	-		Sama_1240	0.57	-0.2
1,524,438	-		Sama_1240	0.57	-1.1
1,524,466	+		Sama_1240	0.59	-0.7
1,524,467	-		Sama_1240	0.59	+0.1