Strain Fitness in Shewanella amazonensis SB2B around Sama_1018

Experiment: Bacitracin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_1016 and Sama_1017 are separated by 37 nucleotidesSama_1017 and Sama_1018 are separated by 111 nucleotidesSama_1018 and ribH are separated by 133 nucleotidesribH and nusB are separated by 15 nucleotides Sama_1016: Sama_1016 - diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase (RefSeq), at 1,230,843 to 1,231,979 _1016 Sama_1017: Sama_1017 - riboflavin synthase subunit alpha (RefSeq), at 1,232,017 to 1,232,670 _1017 Sama_1018: Sama_1018 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 1,232,782 to 1,233,888 _1018 Sama_1019: ribH - 6,7-dimethyl-8-ribityllumazine synthase (RefSeq), at 1,234,022 to 1,234,498 ribH Sama_1020: nusB - transcription antitermination protein NusB (RefSeq), at 1,234,514 to 1,234,918 nusB Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1232.005 kb on + strandat 1232.005 kb on + strandat 1232.016 kb on + strandat 1232.016 kb on + strandat 1232.016 kb on + strandat 1232.016 kb on + strandat 1232.017 kb on - strandat 1232.017 kb on - strandat 1232.017 kb on - strandat 1232.017 kb on - strandat 1232.051 kb on + strandat 1232.067 kb on + strandat 1232.068 kb on - strandat 1232.115 kb on - strand, within Sama_1017at 1232.115 kb on - strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.191 kb on + strand, within Sama_1017at 1232.192 kb on - strand, within Sama_1017at 1232.192 kb on - strand, within Sama_1017at 1232.204 kb on + strand, within Sama_1017at 1232.205 kb on - strand, within Sama_1017at 1232.412 kb on + strand, within Sama_1017at 1232.413 kb on - strand, within Sama_1017at 1232.413 kb on - strand, within Sama_1017at 1232.434 kb on - strand, within Sama_1017at 1232.434 kb on - strand, within Sama_1017at 1232.434 kb on - strand, within Sama_1017at 1232.459 kb on + strand, within Sama_1017at 1232.459 kb on + strand, within Sama_1017at 1232.459 kb on + strand, within Sama_1017at 1232.460 kb on - strand, within Sama_1017at 1232.495 kb on + strand, within Sama_1017at 1232.495 kb on + strand, within Sama_1017at 1232.495 kb on + strand, within Sama_1017at 1232.495 kb on + strand, within Sama_1017at 1232.495 kb on + strand, within Sama_1017at 1232.495 kb on + strand, within Sama_1017at 1232.496 kb on - strand, within Sama_1017at 1232.496 kb on - strand, within Sama_1017at 1232.582 kb on - strand, within Sama_1017at 1232.661 kb on + strandat 1232.680 kb on + strandat 1232.681 kb on - strandat 1232.759 kb on + strandat 1232.759 kb on + strandat 1232.778 kb on + strandat 1232.778 kb on + strandat 1232.778 kb on + strandat 1232.778 kb on + strandat 1232.778 kb on + strandat 1232.778 kb on + strandat 1232.779 kb on - strandat 1232.779 kb on - strandat 1232.779 kb on - strandat 1232.779 kb on - strandat 1232.779 kb on - strandat 1232.779 kb on - strandat 1232.789 kb on + strandat 1232.932 kb on + strand, within Sama_1018at 1232.933 kb on - strand, within Sama_1018at 1232.933 kb on - strand, within Sama_1018at 1232.933 kb on - strand, within Sama_1018at 1232.933 kb on - strand, within Sama_1018at 1232.933 kb on - strand, within Sama_1018at 1232.933 kb on - strand, within Sama_1018at 1233.037 kb on - strand, within Sama_1018at 1233.249 kb on - strand, within Sama_1018at 1233.340 kb on - strand, within Sama_1018at 1233.374 kb on - strand, within Sama_1018at 1233.417 kb on + strand, within Sama_1018at 1233.444 kb on + strand, within Sama_1018at 1233.444 kb on + strand, within Sama_1018at 1233.445 kb on - strand, within Sama_1018at 1233.445 kb on - strand, within Sama_1018at 1233.445 kb on - strand, within Sama_1018at 1233.487 kb on + strand, within Sama_1018at 1233.487 kb on + strand, within Sama_1018at 1233.487 kb on + strand, within Sama_1018at 1233.488 kb on - strand, within Sama_1018at 1233.488 kb on - strand, within Sama_1018at 1233.488 kb on - strand, within Sama_1018at 1233.511 kb on - strand, within Sama_1018at 1233.599 kb on + strand, within Sama_1018at 1233.599 kb on + strand, within Sama_1018at 1233.599 kb on + strand, within Sama_1018at 1233.599 kb on + strand, within Sama_1018at 1233.600 kb on - strand, within Sama_1018at 1233.645 kb on + strand, within Sama_1018at 1233.646 kb on - strand, within Sama_1018at 1233.675 kb on + strand, within Sama_1018at 1233.675 kb on + strand, within Sama_1018at 1233.675 kb on + strand, within Sama_1018at 1233.676 kb on - strand, within Sama_1018at 1233.676 kb on - strand, within Sama_1018at 1233.690 kb on + strand, within Sama_1018at 1233.832 kb on + strandat 1233.832 kb on + strandat 1233.832 kb on + strandat 1233.832 kb on + strandat 1233.832 kb on + strandat 1233.833 kb on - strandat 1233.833 kb on - strandat 1233.872 kb on - strandat 1233.872 kb on - strandat 1233.886 kb on + strandat 1233.886 kb on + strandat 1233.886 kb on + strandat 1233.887 kb on - strandat 1233.890 kb on + strandat 1233.890 kb on + strandat 1233.891 kb on - strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.911 kb on + strandat 1233.912 kb on - strandat 1233.946 kb on + strandat 1234.001 kb on + strandat 1234.474 kb on + strandat 1234.474 kb on + strandat 1234.474 kb on + strandat 1234.496 kb on + strandat 1234.496 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
remove
1,232,005 + -0.1
1,232,005 + -2.5
1,232,016 + +1.0
1,232,016 + +1.7
1,232,016 + +1.3
1,232,016 + +0.5
1,232,017 - -0.4
1,232,017 - +0.9
1,232,017 - -0.4
1,232,017 - +0.9
1,232,051 + +0.6
1,232,067 + +1.0
1,232,068 - +0.9
1,232,115 - Sama_1017 0.15 +0.7
1,232,115 - Sama_1017 0.15 +1.3
1,232,191 + Sama_1017 0.27 +0.3
1,232,191 + Sama_1017 0.27 +1.4
1,232,191 + Sama_1017 0.27 +1.2
1,232,191 + Sama_1017 0.27 +0.5
1,232,191 + Sama_1017 0.27 +0.5
1,232,191 + Sama_1017 0.27 +0.7
1,232,191 + Sama_1017 0.27 +0.3
1,232,192 - Sama_1017 0.27 -0.1
1,232,192 - Sama_1017 0.27 +0.5
1,232,204 + Sama_1017 0.29 +0.1
1,232,205 - Sama_1017 0.29 +0.5
1,232,412 + Sama_1017 0.60 +0.8
1,232,413 - Sama_1017 0.61 -0.2
1,232,413 - Sama_1017 0.61 +1.0
1,232,434 - Sama_1017 0.64 +1.6
1,232,434 - Sama_1017 0.64 -1.5
1,232,434 - Sama_1017 0.64 +0.7
1,232,459 + Sama_1017 0.68 +1.2
1,232,459 + Sama_1017 0.68 +0.5
1,232,459 + Sama_1017 0.68 +0.5
1,232,460 - Sama_1017 0.68 +1.1
1,232,495 + Sama_1017 0.73 -0.5
1,232,495 + Sama_1017 0.73 -0.1
1,232,495 + Sama_1017 0.73 -0.5
1,232,495 + Sama_1017 0.73 +1.9
1,232,495 + Sama_1017 0.73 +1.0
1,232,495 + Sama_1017 0.73 +1.4
1,232,496 - Sama_1017 0.73 -0.5
1,232,496 - Sama_1017 0.73 +1.9
1,232,582 - Sama_1017 0.86 -0.4
1,232,661 + +0.5
1,232,680 + +0.5
1,232,681 - -0.7
1,232,759 + +0.9
1,232,759 + -0.5
1,232,778 + +1.7
1,232,778 + +1.3
1,232,778 + +0.5
1,232,778 + -1.7
1,232,778 + -0.5
1,232,778 + +0.3
1,232,779 - +0.5
1,232,779 - +0.9
1,232,779 - -0.4
1,232,779 - +1.4
1,232,779 - -0.3
1,232,779 - +1.4
1,232,789 + -0.4
1,232,932 + Sama_1018 0.14 +0.1
1,232,933 - Sama_1018 0.14 +0.0
1,232,933 - Sama_1018 0.14 +0.5
1,232,933 - Sama_1018 0.14 -0.9
1,232,933 - Sama_1018 0.14 +0.7
1,232,933 - Sama_1018 0.14 +0.2
1,232,933 - Sama_1018 0.14 -0.4
1,233,037 - Sama_1018 0.23 +0.5
1,233,249 - Sama_1018 0.42 -1.0
1,233,340 - Sama_1018 0.50 -0.7
1,233,374 - Sama_1018 0.53 +1.6
1,233,417 + Sama_1018 0.57 +0.9
1,233,444 + Sama_1018 0.60 -0.1
1,233,444 + Sama_1018 0.60 -0.6
1,233,445 - Sama_1018 0.60 +0.3
1,233,445 - Sama_1018 0.60 -0.8
1,233,445 - Sama_1018 0.60 +0.2
1,233,487 + Sama_1018 0.64 -0.3
1,233,487 + Sama_1018 0.64 +0.7
1,233,487 + Sama_1018 0.64 -0.8
1,233,488 - Sama_1018 0.64 +0.7
1,233,488 - Sama_1018 0.64 +1.1
1,233,488 - Sama_1018 0.64 -0.3
1,233,511 - Sama_1018 0.66 +0.8
1,233,599 + Sama_1018 0.74 +0.5
1,233,599 + Sama_1018 0.74 -1.9
1,233,599 + Sama_1018 0.74 -0.6
1,233,599 + Sama_1018 0.74 -0.6
1,233,600 - Sama_1018 0.74 +1.0
1,233,645 + Sama_1018 0.78 -0.7
1,233,646 - Sama_1018 0.78 +0.3
1,233,675 + Sama_1018 0.81 +0.3
1,233,675 + Sama_1018 0.81 -1.1
1,233,675 + Sama_1018 0.81 -0.9
1,233,676 - Sama_1018 0.81 +0.6
1,233,676 - Sama_1018 0.81 +1.6
1,233,690 + Sama_1018 0.82 +0.1
1,233,832 + +1.2
1,233,832 + -0.1
1,233,832 + -0.9
1,233,832 + -0.2
1,233,832 + +0.2
1,233,833 - +0.2
1,233,833 - -0.7
1,233,872 - +0.0
1,233,872 - +2.0
1,233,886 + +0.3
1,233,886 + -0.4
1,233,886 + -0.6
1,233,887 - +0.2
1,233,890 + -0.1
1,233,890 + -0.5
1,233,891 - +0.2
1,233,911 + -0.1
1,233,911 + -0.7
1,233,911 + +0.2
1,233,911 + -0.2
1,233,911 + -0.0
1,233,911 + -0.0
1,233,911 + +0.7
1,233,911 + -0.7
1,233,911 + -0.1
1,233,912 - -1.9
1,233,946 + +1.5
1,234,001 + -0.4
1,234,474 + +1.3
1,234,474 + -0.7
1,234,474 + -1.9
1,234,496 + +0.2
1,234,496 + -3.3

Or see this region's nucleotide sequence