Strain Fitness in Shewanella amazonensis SB2B around Sama_1015

Experiment: Bacitracin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.125 mg/ml
1,229,413	-	glyA	Sama_1014	0.32	+0.3
1,229,432	+	glyA	Sama_1014	0.33	+0.8
1,229,432	+	glyA	Sama_1014	0.33	-0.0
1,229,432	+	glyA	Sama_1014	0.33	-0.3
1,229,432	+	glyA	Sama_1014	0.33	-0.6
1,229,432	+	glyA	Sama_1014	0.33	+0.2
1,229,433	-	glyA	Sama_1014	0.33	-0.8
1,229,433	-	glyA	Sama_1014	0.33	+0.2
1,229,433	-	glyA	Sama_1014	0.33	-0.4
1,229,447	+	glyA	Sama_1014	0.34	-0.3
1,229,447	+	glyA	Sama_1014	0.34	+0.3
1,229,477	+	glyA	Sama_1014	0.37	-1.9
1,229,544	-	glyA	Sama_1014	0.42	+0.4
1,229,600	+	glyA	Sama_1014	0.47	-0.4
1,229,600	+	glyA	Sama_1014	0.47	-1.1
1,229,600	+	glyA	Sama_1014	0.47	+1.9
1,229,600	+	glyA	Sama_1014	0.47	+1.5
1,229,600	+	glyA	Sama_1014	0.47	+0.4
1,229,601	-	glyA	Sama_1014	0.47	-0.1
1,229,601	-	glyA	Sama_1014	0.47	-0.6
1,229,601	-	glyA	Sama_1014	0.47	-0.5
1,229,625	+	glyA	Sama_1014	0.49	+0.1
1,229,625	+	glyA	Sama_1014	0.49	-0.6
1,229,625	+	glyA	Sama_1014	0.49	+0.2
1,229,626	-	glyA	Sama_1014	0.49	-0.5
1,229,649	+	glyA	Sama_1014	0.51	+3.0
1,229,649	+	glyA	Sama_1014	0.51	+0.3
1,229,649	+	glyA	Sama_1014	0.51	+0.1
1,229,651	+	glyA	Sama_1014	0.51	-0.1
1,229,680	-	glyA	Sama_1014	0.53	+0.5
1,229,759	+	glyA	Sama_1014	0.59	-0.1
1,229,759	+	glyA	Sama_1014	0.59	+0.1
1,229,760	-	glyA	Sama_1014	0.59	+0.2
1,229,781	+	glyA	Sama_1014	0.61	+0.3
1,229,873	+	glyA	Sama_1014	0.68	+0.7
1,229,873	+	glyA	Sama_1014	0.68	-0.1
1,229,873	+	glyA	Sama_1014	0.68	+0.2
1,229,873	+	glyA	Sama_1014	0.68	+0.4
1,229,916	+	glyA	Sama_1014	0.72	+0.5
1,229,916	+	glyA	Sama_1014	0.72	-0.2
1,229,916	+	glyA	Sama_1014	0.72	+0.5
1,229,917	-	glyA	Sama_1014	0.72	-0.2
1,229,917	-	glyA	Sama_1014	0.72	-0.6
1,229,917	-	glyA	Sama_1014	0.72	+1.4
1,229,917	-	glyA	Sama_1014	0.72	-1.9
1,230,004	+	glyA	Sama_1014	0.79	-0.4
1,230,049	+	glyA	Sama_1014	0.82	+0.3
1,230,049	+	glyA	Sama_1014	0.82	+0.5
1,230,049	+	glyA	Sama_1014	0.82	+0.2
1,230,049	+	glyA	Sama_1014	0.82	+1.9
1,230,181	-				-0.7
1,230,181	-				-0.7
1,230,181	-				-0.6
1,230,181	-				+1.7
1,230,181	-				-1.5
1,230,231	+				+0.2
1,230,231	+				+0.7
1,230,260	+				-0.1
1,230,261	-				+0.9
1,230,261	-				+0.2
1,230,274	+				+0.3
1,230,283	+				-0.5
1,230,283	+				-0.4
1,230,288	+				+0.1
1,230,288	+				+0.9
1,230,288	+				-1.0
1,230,288	+				-0.2
1,230,321	+				-0.8
1,230,327	+				-1.5
1,230,327	+				+0.8
1,230,327	+				-1.0
1,230,327	+				+0.7
1,230,445	+	nrdR	Sama_1015	0.16	-1.8
1,230,485	+	nrdR	Sama_1015	0.25	-0.9
1,230,485	+	nrdR	Sama_1015	0.25	-0.3
1,230,741	+	nrdR	Sama_1015	0.82	-1.8
1,230,741	+	nrdR	Sama_1015	0.82	-1.3
1,230,741	+	nrdR	Sama_1015	0.82	-0.1
1,230,741	+	nrdR	Sama_1015	0.82	-1.6
1,230,741	+	nrdR	Sama_1015	0.82	-1.0
1,230,760	+	nrdR	Sama_1015	0.86	-1.7
1,230,760	+	nrdR	Sama_1015	0.86	-0.6
1,230,819	+				+0.5
1,230,819	+				-0.1
1,230,819	+				+0.1
1,230,819	+				+1.8
1,230,819	+				-0.2
1,230,848	+				+1.1