Strain Fitness in Shewanella amazonensis SB2B around Sama_1004

Experiment: Bacitracin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.125 mg/ml
1,214,304	+		Sama_1002	0.63	-3.0
1,214,357	-		Sama_1002	0.85	-1.9
1,214,366	-		Sama_1002	0.88	-2.3
1,214,366	-		Sama_1002	0.88	-1.5
1,214,368	+		Sama_1002	0.89	-2.6
1,214,387	+				-1.9
1,214,499	-				+1.5
1,214,499	-				-0.0
1,214,534	+				+1.5
1,214,535	-				-0.9
1,214,535	-				-1.4
1,214,592	-				-0.9
1,214,615	-				-0.0
1,214,615	-				-0.1
1,214,615	-				-0.7
1,214,615	-				-1.5
1,214,630	-				-1.5
1,214,630	-				-1.6
1,214,672	+				-0.9
1,214,672	+				-0.3
1,214,673	-				+0.1
1,214,673	-				-0.2
1,214,673	-				-0.2
1,214,673	-				+0.1
1,214,724	+				+1.1
1,214,724	+				+0.1
1,214,786	+				+0.0
1,214,787	-				-0.4
1,214,832	-				+0.1
1,214,858	-		Sama_1003	0.11	-0.4
1,214,858	-		Sama_1003	0.11	+0.5
1,214,858	-		Sama_1003	0.11	+0.1
1,214,904	+		Sama_1003	0.30	-0.5
1,214,915	+		Sama_1003	0.35	-0.8
1,214,915	+		Sama_1003	0.35	+0.4
1,214,957	+		Sama_1003	0.52	-0.2
1,214,957	+		Sama_1003	0.52	-1.6
1,214,958	-		Sama_1003	0.52	-1.6
1,214,958	-		Sama_1003	0.52	-0.4
1,214,967	+		Sama_1003	0.56	-0.1
1,214,968	-		Sama_1003	0.56	+0.5
1,214,968	+		Sama_1003	0.56	-1.6
1,214,968	-		Sama_1003	0.56	+0.6
1,214,968	-		Sama_1003	0.56	+3.3
1,214,980	+		Sama_1003	0.61	+0.6
1,214,981	-		Sama_1003	0.62	+0.5
1,215,071	+				+0.1
1,215,072	-				-0.3
1,215,072	-				+0.1
1,215,072	-				+0.7
1,215,072	-				+0.2
1,215,072	-				-0.4
1,215,157	+				-0.7
1,215,157	+				-1.0
1,215,157	+				+0.6
1,215,157	+				-0.6
1,215,158	-				-0.2
1,215,164	-				-0.5
1,215,226	-				-2.3
1,215,345	+				-0.6
1,215,346	-				-1.5
1,215,346	-				-0.6
1,215,399	+		Sama_1004	0.13	-2.1
1,215,399	+		Sama_1004	0.13	-0.7
1,215,399	+		Sama_1004	0.13	-0.1
1,215,400	-		Sama_1004	0.13	-2.8
1,215,400	-		Sama_1004	0.13	-3.6
1,215,400	-		Sama_1004	0.13	-2.9
1,215,411	-		Sama_1004	0.13	-2.7
1,215,425	-		Sama_1004	0.14	-0.7
1,215,571	-		Sama_1004	0.25	-1.4
1,215,571	-		Sama_1004	0.25	-2.2
1,215,571	-		Sama_1004	0.25	-1.5
1,215,705	+		Sama_1004	0.34	-2.8
1,215,706	-		Sama_1004	0.34	-2.8
1,215,718	+		Sama_1004	0.35	-1.9
1,215,730	-		Sama_1004	0.36	-1.5
1,215,732	+		Sama_1004	0.36	-1.1
1,215,733	-		Sama_1004	0.36	-1.1
1,215,733	-		Sama_1004	0.36	-2.4
1,215,733	-		Sama_1004	0.36	-2.5
1,215,733	-		Sama_1004	0.36	-1.7
1,215,733	-		Sama_1004	0.36	-1.5
1,215,746	-		Sama_1004	0.37	-2.0
1,215,829	-		Sama_1004	0.43	-2.8
1,215,834	+		Sama_1004	0.44	-3.3
1,215,834	+		Sama_1004	0.44	-1.5
1,215,834	+		Sama_1004	0.44	-1.5
1,215,834	+		Sama_1004	0.44	-3.1
1,215,835	-		Sama_1004	0.44	-2.8
1,215,835	-		Sama_1004	0.44	-1.9
1,215,835	-		Sama_1004	0.44	-3.7
1,215,835	-		Sama_1004	0.44	-0.9
1,215,835	-		Sama_1004	0.44	-1.5
1,215,835	-		Sama_1004	0.44	-3.7
1,215,835	-		Sama_1004	0.44	-1.9
1,215,835	-		Sama_1004	0.44	-1.5
1,215,867	+		Sama_1004	0.46	-2.4
1,215,867	+		Sama_1004	0.46	-1.5
1,215,868	-		Sama_1004	0.46	-2.3
1,215,868	-		Sama_1004	0.46	-2.8
1,216,020	+		Sama_1004	0.57	-0.1
1,216,020	+		Sama_1004	0.57	-1.7
1,216,021	-		Sama_1004	0.57	-3.3
1,216,072	+		Sama_1004	0.61	-1.8
1,216,072	+		Sama_1004	0.61	-2.6
1,216,073	-		Sama_1004	0.61	-2.6
1,216,073	-		Sama_1004	0.61	-1.7
1,216,073	-		Sama_1004	0.61	-2.3
1,216,075	+		Sama_1004	0.61	-1.5
1,216,075	+		Sama_1004	0.61	-1.6
1,216,076	-		Sama_1004	0.61	-0.9
1,216,076	-		Sama_1004	0.61	-3.5
1,216,076	-		Sama_1004	0.61	-2.5
1,216,077	+		Sama_1004	0.61	-3.4
1,216,077	+		Sama_1004	0.61	-3.5
1,216,077	+		Sama_1004	0.61	-0.1
1,216,077	+		Sama_1004	0.61	-1.2
1,216,078	-		Sama_1004	0.61	-2.4
1,216,078	-		Sama_1004	0.61	-2.6
1,216,078	-		Sama_1004	0.61	-3.5
1,216,088	+		Sama_1004	0.62	-1.9
1,216,105	-		Sama_1004	0.63	-0.9
1,216,105	-		Sama_1004	0.63	-1.1
1,216,111	+		Sama_1004	0.63	-1.5
1,216,112	-		Sama_1004	0.64	-2.3
1,216,112	-		Sama_1004	0.64	-1.7
1,216,112	-		Sama_1004	0.64	-2.7
1,216,112	-		Sama_1004	0.64	-3.4
1,216,112	-		Sama_1004	0.64	-3.1
1,216,208	-		Sama_1004	0.70	-2.6
1,216,241	-		Sama_1004	0.73	-3.4
1,216,272	-		Sama_1004	0.75	-3.4
1,216,318	+		Sama_1004	0.78	-1.7
1,216,318	+		Sama_1004	0.78	-0.6
1,216,318	+		Sama_1004	0.78	-2.5
1,216,319	-		Sama_1004	0.78	-3.0
1,216,390	-		Sama_1004	0.83	-2.8
1,216,434	+		Sama_1004	0.87	-1.7
1,216,434	+		Sama_1004	0.87	-0.7
1,216,435	-		Sama_1004	0.87	-1.1
1,216,435	-		Sama_1004	0.87	-2.5
1,216,468	+		Sama_1004	0.89	-1.7
1,216,469	-		Sama_1004	0.89	-1.3
1,216,469	-		Sama_1004	0.89	-2.5
1,216,469	-		Sama_1004	0.89	-2.6
1,216,469	-		Sama_1004	0.89	-3.4
1,216,492	+				-3.9
1,216,493	-				-2.7
1,216,522	-				-3.5
1,216,522	-				-1.1
1,216,540	-				-2.8
1,216,557	+				-1.4
1,216,569	+				-1.3
1,216,570	-				-0.5
1,216,616	-				-2.0
1,216,616	-				-3.9
1,216,621	+				-1.4
1,216,622	-				+0.1
1,216,622	-				-1.6
1,216,622	-				-1.7
1,216,622	-				-1.5
1,216,622	-				-2.1
1,216,622	-				-1.0
1,216,622	-				-1.1
1,216,641	-				+0.2
1,216,641	-				-0.2
1,216,641	-				+0.7
1,216,641	-				+1.1
1,216,685	+				-2.1
1,216,686	-				+0.2
1,216,712	+				+0.3
1,216,712	+				+0.9
1,216,713	-				-1.1
1,216,735	+				+0.1
1,216,736	-				-0.1
1,216,740	+				-0.2
1,216,741	-				+0.5
1,216,741	-				+1.2
1,216,764	+				-0.8
1,216,764	+				+0.5
1,216,765	-				-0.4
1,216,765	-				-0.8
1,216,765	-				-1.0
1,216,772	+				-1.3
1,216,772	+				+0.1
1,216,772	+				+0.9
1,216,791	+				-0.1
1,216,791	+				-0.5
1,216,792	-				-0.9
1,216,792	-				+0.3
1,216,804	+				-0.5
1,216,804	+				+0.2
1,216,804	+				-0.3
1,216,804	+				-0.8
1,216,806	+				-0.3
1,216,806	+				-0.5
1,216,806	+				-0.5
1,216,806	+				+0.3
1,216,806	+				-1.5
1,216,806	+				-1.9
1,216,806	+				+0.5
1,216,806	+				-0.1
1,216,807	-				-0.1
1,216,807	-				-1.7
1,216,807	-				-0.1
1,216,818	-				-0.1
1,216,818	-				-0.9
1,216,821	+				-0.2
1,216,821	+				+0.9
1,216,821	+				-1.1
1,216,822	-				-0.8
1,216,935	-		Sama_1005	0.10	+0.5
1,216,995	-		Sama_1005	0.17	+1.0
1,217,030	+		Sama_1005	0.22	+0.9
1,217,030	+		Sama_1005	0.22	-0.1
1,217,052	+		Sama_1005	0.24	+1.3
1,217,053	-		Sama_1005	0.24	+0.1
1,217,054	+		Sama_1005	0.24	+0.3
1,217,156	+		Sama_1005	0.37	-0.8
1,217,156	+		Sama_1005	0.37	+0.5
1,217,204	+		Sama_1005	0.42	-0.7
1,217,204	+		Sama_1005	0.42	+0.4
1,217,205	-		Sama_1005	0.42	+0.7
1,217,205	-		Sama_1005	0.42	+0.1
1,217,205	-		Sama_1005	0.42	+1.1
1,217,248	+		Sama_1005	0.47	+0.5
1,217,248	+		Sama_1005	0.47	+0.4
1,217,249	-		Sama_1005	0.48	+0.3
1,217,250	+		Sama_1005	0.48	-0.1
1,217,250	+		Sama_1005	0.48	+0.1
1,217,250	+		Sama_1005	0.48	+0.3
1,217,250	+		Sama_1005	0.48	-1.0
1,217,250	+		Sama_1005	0.48	+0.1
1,217,250	+		Sama_1005	0.48	-3.4
1,217,250	+		Sama_1005	0.48	+1.0
1,217,250	+		Sama_1005	0.48	-0.2
1,217,250	+		Sama_1005	0.48	-0.2
1,217,250	+		Sama_1005	0.48	+0.0
1,217,251	-		Sama_1005	0.48	+1.0
1,217,251	-		Sama_1005	0.48	-1.2
1,217,251	-		Sama_1005	0.48	+0.3
1,217,251	-		Sama_1005	0.48	-0.4
1,217,251	-		Sama_1005	0.48	-0.4
1,217,251	-		Sama_1005	0.48	-0.5
1,217,283	+		Sama_1005	0.52	-0.1
1,217,284	-		Sama_1005	0.52	+0.7
1,217,311	+		Sama_1005	0.55	-0.3
1,217,318	+		Sama_1005	0.56	-3.1
1,217,319	-		Sama_1005	0.56	-0.4
1,217,319	-		Sama_1005	0.56	-0.7
1,217,377	+		Sama_1005	0.63	+1.0
1,217,377	+		Sama_1005	0.63	-0.1
1,217,378	-		Sama_1005	0.63	-1.0
1,217,496	+		Sama_1005	0.77	+0.0
1,217,517	+		Sama_1005	0.79	-0.8
1,217,517	+		Sama_1005	0.79	-0.8
1,217,517	+		Sama_1005	0.79	+1.0
1,217,517	+		Sama_1005	0.79	-0.1
1,217,518	-		Sama_1005	0.79	+0.1
1,217,547	+		Sama_1005	0.83	-1.7
1,217,548	-		Sama_1005	0.83	+0.1
1,217,596	+		Sama_1005	0.89	-1.2
1,217,596	+		Sama_1005	0.89	+0.1
1,217,597	-		Sama_1005	0.89	-1.1