Strain Fitness in Shewanella amazonensis SB2B around Sama_0871

Experiment: Bacitracin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.125 mg/ml
1,060,742	+				-1.3
1,060,743	-				+0.5
1,060,755	+				-0.8
1,060,755	+				+0.9
1,060,776	+				+0.2
1,060,776	+				-0.6
1,060,777	-				+0.9
1,060,941	+	nhaR	Sama_0870	0.25	-0.9
1,060,941	+	nhaR	Sama_0870	0.25	-0.8
1,060,941	+	nhaR	Sama_0870	0.25	+0.7
1,060,941	+	nhaR	Sama_0870	0.25	-0.1
1,060,941	+	nhaR	Sama_0870	0.25	+0.8
1,060,941	+	nhaR	Sama_0870	0.25	-0.3
1,060,941	+	nhaR	Sama_0870	0.25	-0.9
1,060,942	-	nhaR	Sama_0870	0.25	-0.3
1,060,942	-	nhaR	Sama_0870	0.25	-0.0
1,060,942	-	nhaR	Sama_0870	0.25	+0.6
1,060,946	+	nhaR	Sama_0870	0.26	+1.9
1,060,946	+	nhaR	Sama_0870	0.26	-0.1
1,060,947	-	nhaR	Sama_0870	0.26	+0.5
1,060,947	-	nhaR	Sama_0870	0.26	-1.4
1,060,947	-	nhaR	Sama_0870	0.26	+0.3
1,060,962	+	nhaR	Sama_0870	0.28	+1.1
1,060,962	+	nhaR	Sama_0870	0.28	+0.5
1,060,962	+	nhaR	Sama_0870	0.28	-0.6
1,060,962	+	nhaR	Sama_0870	0.28	-2.4
1,060,962	+	nhaR	Sama_0870	0.28	-1.1
1,060,962	+	nhaR	Sama_0870	0.28	-0.2
1,060,962	+	nhaR	Sama_0870	0.28	-0.1
1,060,963	-	nhaR	Sama_0870	0.28	+0.1
1,060,963	-	nhaR	Sama_0870	0.28	+1.2
1,060,963	-	nhaR	Sama_0870	0.28	-0.2
1,060,963	-	nhaR	Sama_0870	0.28	-0.3
1,060,963	-	nhaR	Sama_0870	0.28	-1.3
1,060,971	-	nhaR	Sama_0870	0.28	+0.8
1,061,063	-	nhaR	Sama_0870	0.39	+0.3
1,061,071	+	nhaR	Sama_0870	0.39	+0.1
1,061,074	+	nhaR	Sama_0870	0.40	+0.6
1,061,074	+	nhaR	Sama_0870	0.40	-0.6
1,061,074	+	nhaR	Sama_0870	0.40	+0.3
1,061,074	+	nhaR	Sama_0870	0.40	-1.1
1,061,074	+	nhaR	Sama_0870	0.40	+0.9
1,061,075	-	nhaR	Sama_0870	0.40	-0.1
1,061,075	-	nhaR	Sama_0870	0.40	+0.0
1,061,090	+	nhaR	Sama_0870	0.42	-1.2
1,061,090	+	nhaR	Sama_0870	0.42	+0.6
1,061,135	-	nhaR	Sama_0870	0.47	+0.3
1,061,135	-	nhaR	Sama_0870	0.47	-0.2
1,061,180	+	nhaR	Sama_0870	0.51	-0.2
1,061,441	+	nhaR	Sama_0870	0.80	-0.9
1,061,442	-	nhaR	Sama_0870	0.80	-0.3
1,061,442	-	nhaR	Sama_0870	0.80	+0.4
1,061,453	-	nhaR	Sama_0870	0.82	-0.1
1,061,507	+	nhaR	Sama_0870	0.87	-0.2
1,061,507	+	nhaR	Sama_0870	0.87	+0.2
1,061,507	+	nhaR	Sama_0870	0.87	+0.3
1,061,507	+	nhaR	Sama_0870	0.87	+0.8
1,061,507	+	nhaR	Sama_0870	0.87	+0.4
1,061,508	-	nhaR	Sama_0870	0.88	+0.1
1,061,618	+				-0.0
1,061,618	+				-1.4
1,061,619	-				-1.4
1,061,619	-				+0.9
1,061,619	-				+0.9
1,061,634	-				+0.8
1,061,703	+				-1.0
1,061,714	+				-0.3
1,061,714	+				-0.2
1,061,714	+				+0.7
1,061,714	+				+1.3
1,061,714	+				-0.1
1,061,714	+				+0.4
1,061,714	+				+1.9
1,061,715	-				+1.6
1,061,715	-				+0.2
1,061,734	+				-1.9
1,061,735	-				-0.1
1,061,813	+		Sama_0871	0.35	+0.9
1,061,813	+		Sama_0871	0.35	+0.5
1,061,814	-		Sama_0871	0.35	+1.6
1,061,824	+		Sama_0871	0.40	+0.5
1,061,851	-		Sama_0871	0.51	+0.2
1,061,937	+		Sama_0871	0.87	+0.4
1,061,937	+		Sama_0871	0.87	+2.3
1,061,937	+		Sama_0871	0.87	+1.2
1,061,938	-		Sama_0871	0.87	+1.3
1,061,938	-		Sama_0871	0.87	+0.4
1,061,938	-		Sama_0871	0.87	+1.9
1,061,997	+		Sama_0872	0.11	+1.4
1,061,998	-		Sama_0872	0.12	+0.1
1,061,998	-		Sama_0872	0.12	+0.0
1,061,998	-		Sama_0872	0.12	+0.3
1,062,061	+		Sama_0872	0.26	+0.0
1,062,088	+		Sama_0872	0.33	+3.3
1,062,089	-		Sama_0872	0.33	+0.5
1,062,089	-		Sama_0872	0.33	-1.1
1,062,089	-		Sama_0872	0.33	-0.8
1,062,119	+		Sama_0872	0.40	-0.7
1,062,243	-		Sama_0872	0.69	-0.2
1,062,289	+		Sama_0872	0.80	+1.2
1,062,290	-		Sama_0872	0.80	-1.6
1,062,364	+				-1.5