Strain Fitness in Shewanella amazonensis SB2B around Sama_0825

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0824 and Sama_0825 are separated by 81 nucleotidesSama_0825 and rpsU are separated by 6 nucleotidesrpsU and Sama_0827 are separated by 232 nucleotides Sama_0824: Sama_0824 - DNA primase (RefSeq), at 1,008,819 to 1,010,549 _0824 Sama_0825: Sama_0825 - hypothetical protein (RefSeq), at 1,010,631 to 1,011,074 _0825 Sama_0826: rpsU - 30S ribosomal protein S21 (RefSeq), at 1,011,081 to 1,011,296 rpsU Sama_0827: Sama_0827 - O-sialoglycoprotein endopeptidase (RefSeq), at 1,011,529 to 1,012,542 _0827 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -3 -2 -1 0 1at 1010.618 kb on - strandat 1010.618 kb on - strandat 1010.713 kb on - strand, within Sama_0825at 1010.718 kb on - strand, within Sama_0825at 1010.746 kb on - strand, within Sama_0825at 1011.429 kb on + strandat 1011.464 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.472 kb on + strandat 1011.475 kb on + strandat 1011.475 kb on + strandat 1011.475 kb on + strandat 1011.478 kb on + strandat 1011.478 kb on + strandat 1011.483 kb on + strandat 1011.483 kb on + strandat 1011.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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1,010,618 - -1.2
1,010,618 - -2.5
1,010,713 - Sama_0825 0.18 -1.8
1,010,718 - Sama_0825 0.20 -1.6
1,010,746 - Sama_0825 0.26 -1.8
1,011,429 + -0.5
1,011,464 + -0.2
1,011,472 + -1.2
1,011,472 + -0.8
1,011,472 + +0.6
1,011,472 + -0.2
1,011,472 + -0.4
1,011,472 + -1.0
1,011,472 + -0.9
1,011,472 + -0.8
1,011,475 + -0.8
1,011,475 + -0.8
1,011,475 + -0.9
1,011,478 + -0.7
1,011,478 + -0.6
1,011,483 + -2.8
1,011,483 + -0.5
1,011,484 - +1.0

Or see this region's nucleotide sequence