Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0160 and pckA are separated by 253 nucleotides pckA and hslO are separated by 201 nucleotides
SO0160: SO0160 - transporter, putative (NCBI ptt file), at 166,258 to 167,817
SO0160
SO0162: pckA - phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file), at 168,071 to 169,612
pckA
SO0163: hslO - chaperonin HslO (NCBI ptt file), at 169,814 to 170,674
hslO
Position (kb) 168
169
170 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 167.081 kb on + strand, within SO0160 at 167.189 kb on - strand, within SO0160 at 167.330 kb on + strand, within SO0160 at 167.333 kb on + strand, within SO0160 at 167.388 kb on - strand, within SO0160 at 167.394 kb on - strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.436 kb on + strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.444 kb on - strand, within SO0160 at 167.446 kb on + strand, within SO0160 at 167.462 kb on - strand, within SO0160 at 167.494 kb on + strand, within SO0160 at 167.508 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.517 kb on + strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.525 kb on - strand, within SO0160 at 167.530 kb on - strand, within SO0160 at 167.541 kb on + strand, within SO0160 at 167.541 kb on + strand, within SO0160 at 167.541 kb on + strand, within SO0160 at 167.549 kb on - strand, within SO0160 at 167.549 kb on - strand, within SO0160 at 167.604 kb on - strand, within SO0160 at 167.655 kb on + strand, within SO0160 at 167.656 kb on + strand, within SO0160 at 167.663 kb on - strand at 167.663 kb on - strand at 167.663 kb on - strand at 167.686 kb on + strand at 167.693 kb on + strand at 167.701 kb on - strand at 167.701 kb on - strand at 167.704 kb on + strand at 167.756 kb on - strand at 167.760 kb on + strand at 167.760 kb on + strand at 167.769 kb on - strand at 167.771 kb on + strand at 167.771 kb on + strand at 167.771 kb on + strand at 167.771 kb on + strand at 167.779 kb on - strand at 167.779 kb on - strand at 167.813 kb on + strand at 167.813 kb on + strand at 167.813 kb on + strand at 167.821 kb on + strand at 167.821 kb on - strand at 167.826 kb on - strand at 167.880 kb on - strand at 167.951 kb on - strand at 167.958 kb on + strand at 167.964 kb on + strand at 167.964 kb on + strand at 167.964 kb on + strand at 167.965 kb on + strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.972 kb on - strand at 167.973 kb on - strand at 167.987 kb on - strand at 168.075 kb on + strand at 168.076 kb on + strand at 168.077 kb on + strand at 168.077 kb on - strand at 168.085 kb on - strand at 168.087 kb on + strand at 168.116 kb on - strand at 168.172 kb on + strand at 168.174 kb on + strand at 168.175 kb on - strand at 168.183 kb on + strand at 168.203 kb on + strand at 168.247 kb on + strand, within pckA at 168.248 kb on + strand, within pckA at 168.255 kb on - strand, within pckA at 168.255 kb on - strand, within pckA at 168.255 kb on - strand, within pckA at 168.299 kb on - strand, within pckA at 168.311 kb on - strand, within pckA at 168.432 kb on + strand, within pckA at 168.601 kb on - strand, within pckA at 168.660 kb on + strand, within pckA at 168.660 kb on + strand, within pckA at 168.660 kb on + strand, within pckA at 168.685 kb on - strand, within pckA at 168.770 kb on - strand, within pckA at 168.774 kb on + strand, within pckA at 168.782 kb on - strand, within pckA at 168.874 kb on + strand, within pckA at 168.874 kb on + strand, within pckA at 168.876 kb on + strand, within pckA at 168.882 kb on - strand, within pckA at 168.918 kb on - strand, within pckA at 168.977 kb on + strand, within pckA at 168.985 kb on - strand, within pckA at 168.985 kb on - strand, within pckA at 169.001 kb on + strand, within pckA at 169.008 kb on + strand, within pckA at 169.013 kb on - strand, within pckA at 169.174 kb on - strand, within pckA at 169.200 kb on + strand, within pckA at 169.222 kb on + strand, within pckA at 169.247 kb on + strand, within pckA at 169.267 kb on - strand, within pckA at 169.337 kb on - strand, within pckA at 169.352 kb on + strand, within pckA at 169.409 kb on + strand, within pckA at 169.481 kb on + strand at 169.487 kb on + strand at 169.564 kb on + strand at 169.567 kb on + strand at 169.572 kb on + strand at 169.586 kb on - strand at 169.623 kb on + strand at 169.628 kb on + strand at 169.742 kb on + strand at 169.742 kb on + strand at 169.780 kb on + strand at 169.780 kb on + strand at 169.785 kb on + strand at 169.848 kb on - strand at 169.912 kb on - strand, within hslO at 169.945 kb on - strand, within hslO at 169.972 kb on + strand, within hslO at 169.987 kb on + strand, within hslO at 170.009 kb on + strand, within hslO at 170.060 kb on + strand, within hslO at 170.060 kb on + strand, within hslO at 170.060 kb on + strand, within hslO at 170.060 kb on + strand, within hslO at 170.060 kb on + strand, within hslO at 170.060 kb on + strand, within hslO at 170.068 kb on - strand, within hslO at 170.068 kb on - strand, within hslO at 170.068 kb on - strand, within hslO at 170.068 kb on - strand, within hslO at 170.068 kb on - strand, within hslO at 170.068 kb on - strand, within hslO at 170.077 kb on + strand, within hslO at 170.085 kb on - strand, within hslO at 170.123 kb on + strand, within hslO at 170.188 kb on - strand, within hslO at 170.213 kb on + strand, within hslO at 170.241 kb on - strand, within hslO at 170.242 kb on + strand, within hslO at 170.250 kb on - strand, within hslO at 170.250 kb on - strand, within hslO at 170.338 kb on + strand, within hslO at 170.369 kb on + strand, within hslO at 170.377 kb on - strand, within hslO at 170.549 kb on + strand, within hslO
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 167,081 + SO0160 0.53 +0.2 167,189 - SO0160 0.60 -1.4 167,330 + SO0160 0.69 -0.3 167,333 + SO0160 0.69 +0.3 167,388 - SO0160 0.72 +0.2 167,394 - SO0160 0.73 +0.2 167,436 + SO0160 0.76 -0.3 167,436 + SO0160 0.76 +0.4 167,436 + SO0160 0.76 -0.0 167,436 + SO0160 0.76 +0.1 167,436 + SO0160 0.76 +0.5 167,436 + SO0160 0.76 +0.0 167,436 + SO0160 0.76 -0.3 167,436 + SO0160 0.76 +0.1 167,436 + SO0160 0.76 +0.1 167,436 + SO0160 0.76 +0.9 167,436 + SO0160 0.76 -0.3 167,436 + SO0160 0.76 -0.6 167,436 + SO0160 0.76 +0.2 167,436 + SO0160 0.76 +0.0 167,436 + SO0160 0.76 +0.7 167,444 - SO0160 0.76 -0.6 167,444 - SO0160 0.76 +0.3 167,444 - SO0160 0.76 -0.9 167,444 - SO0160 0.76 +0.5 167,444 - SO0160 0.76 +0.3 167,444 - SO0160 0.76 +0.8 167,444 - SO0160 0.76 +0.5 167,444 - SO0160 0.76 +0.1 167,444 - SO0160 0.76 -0.6 167,444 - SO0160 0.76 +1.1 167,444 - SO0160 0.76 +0.3 167,444 - SO0160 0.76 +0.0 167,444 - SO0160 0.76 -1.1 167,444 - SO0160 0.76 -0.2 167,444 - SO0160 0.76 +0.4 167,444 - SO0160 0.76 +0.1 167,444 - SO0160 0.76 +0.1 167,446 + SO0160 0.76 +0.4 167,462 - SO0160 0.77 +0.7 167,494 + SO0160 0.79 -0.0 167,508 + SO0160 0.80 +0.1 167,517 + SO0160 0.81 -0.9 167,517 + SO0160 0.81 -0.3 167,517 + SO0160 0.81 +0.7 167,517 + SO0160 0.81 +0.1 167,517 + SO0160 0.81 +1.0 167,517 + SO0160 0.81 -0.9 167,517 + SO0160 0.81 -0.1 167,517 + SO0160 0.81 +0.7 167,517 + SO0160 0.81 -0.2 167,517 + SO0160 0.81 -0.0 167,517 + SO0160 0.81 +0.1 167,525 - SO0160 0.81 +0.1 167,525 - SO0160 0.81 -0.5 167,525 - SO0160 0.81 +0.5 167,525 - SO0160 0.81 +0.2 167,525 - SO0160 0.81 +0.2 167,525 - SO0160 0.81 +0.5 167,525 - SO0160 0.81 -0.2 167,525 - SO0160 0.81 +0.8 167,525 - SO0160 0.81 +0.1 167,525 - SO0160 0.81 -0.5 167,525 - SO0160 0.81 +0.6 167,530 - SO0160 0.82 +0.0 167,541 + SO0160 0.82 +0.2 167,541 + SO0160 0.82 +0.9 167,541 + SO0160 0.82 +0.4 167,549 - SO0160 0.83 +0.6 167,549 - SO0160 0.83 -0.2 167,604 - SO0160 0.86 +0.7 167,655 + SO0160 0.90 -0.5 167,656 + SO0160 0.90 +0.1 167,663 - +0.8 167,663 - +0.4 167,663 - +0.3 167,686 + -0.3 167,693 + +1.3 167,701 - -0.3 167,701 - -0.6 167,704 + -0.1 167,756 - +0.2 167,760 + +1.2 167,760 + +1.1 167,769 - -0.4 167,771 + -0.0 167,771 + -1.2 167,771 + -0.2 167,771 + +0.8 167,779 - -0.2 167,779 - -0.1 167,813 + -0.8 167,813 + -0.1 167,813 + +0.6 167,821 + +0.3 167,821 - +0.3 167,826 - +0.8 167,880 - -1.5 167,951 - -1.2 167,958 + +0.2 167,964 + +0.7 167,964 + -0.2 167,964 + +0.4 167,965 + +0.4 167,972 - -0.1 167,972 - +0.3 167,972 - +0.4 167,972 - +0.4 167,972 - +1.1 167,972 - -0.0 167,973 - +0.4 167,987 - +0.3 168,075 + +1.4 168,076 + -0.5 168,077 + +0.4 168,077 - +1.3 168,085 - +1.0 168,087 + +0.4 168,116 - +2.2 168,172 + +1.1 168,174 + +1.9 168,175 - +0.3 168,183 + +2.1 168,203 + +1.4 168,247 + pckA SO0162 0.11 +1.4 168,248 + pckA SO0162 0.11 +0.9 168,255 - pckA SO0162 0.12 +0.4 168,255 - pckA SO0162 0.12 +1.3 168,255 - pckA SO0162 0.12 +1.0 168,299 - pckA SO0162 0.15 +0.9 168,311 - pckA SO0162 0.16 +1.6 168,432 + pckA SO0162 0.23 +1.3 168,601 - pckA SO0162 0.34 +1.1 168,660 + pckA SO0162 0.38 +0.3 168,660 + pckA SO0162 0.38 -1.3 168,660 + pckA SO0162 0.38 +0.4 168,685 - pckA SO0162 0.40 +1.0 168,770 - pckA SO0162 0.45 +1.5 168,774 + pckA SO0162 0.46 +1.2 168,782 - pckA SO0162 0.46 +1.0 168,874 + pckA SO0162 0.52 +1.1 168,874 + pckA SO0162 0.52 +0.6 168,876 + pckA SO0162 0.52 +0.9 168,882 - pckA SO0162 0.53 +1.0 168,918 - pckA SO0162 0.55 +1.6 168,977 + pckA SO0162 0.59 +1.4 168,985 - pckA SO0162 0.59 +0.8 168,985 - pckA SO0162 0.59 +1.4 169,001 + pckA SO0162 0.60 +1.8 169,008 + pckA SO0162 0.61 +0.6 169,013 - pckA SO0162 0.61 +1.2 169,174 - pckA SO0162 0.72 +1.2 169,200 + pckA SO0162 0.73 +0.5 169,222 + pckA SO0162 0.75 +1.3 169,247 + pckA SO0162 0.76 +0.5 169,267 - pckA SO0162 0.78 +1.5 169,337 - pckA SO0162 0.82 +1.1 169,352 + pckA SO0162 0.83 +0.1 169,409 + pckA SO0162 0.87 +1.3 169,481 + +1.2 169,487 + +0.9 169,564 + +0.7 169,567 + +0.8 169,572 + +0.5 169,586 - -1.3 169,623 + +0.9 169,628 + +1.1 169,742 + +0.2 169,742 + +1.0 169,780 + +0.1 169,780 + +0.2 169,785 + +0.5 169,848 - +0.5 169,912 - hslO SO0163 0.11 +0.9 169,945 - hslO SO0163 0.15 -1.9 169,972 + hslO SO0163 0.18 +1.9 169,987 + hslO SO0163 0.20 +0.7 170,009 + hslO SO0163 0.23 +0.8 170,060 + hslO SO0163 0.29 +0.8 170,060 + hslO SO0163 0.29 +1.3 170,060 + hslO SO0163 0.29 +1.1 170,060 + hslO SO0163 0.29 +0.7 170,060 + hslO SO0163 0.29 +0.6 170,060 + hslO SO0163 0.29 -0.2 170,068 - hslO SO0163 0.30 -6.1 170,068 - hslO SO0163 0.30 +0.9 170,068 - hslO SO0163 0.30 +1.5 170,068 - hslO SO0163 0.30 -0.2 170,068 - hslO SO0163 0.30 +0.6 170,068 - hslO SO0163 0.30 +0.2 170,077 + hslO SO0163 0.31 +1.6 170,085 - hslO SO0163 0.31 +1.2 170,123 + hslO SO0163 0.36 +2.3 170,188 - hslO SO0163 0.43 +1.0 170,213 + hslO SO0163 0.46 +1.2 170,241 - hslO SO0163 0.50 +0.9 170,242 + hslO SO0163 0.50 +0.4 170,250 - hslO SO0163 0.51 +1.0 170,250 - hslO SO0163 0.51 +1.5 170,338 + hslO SO0163 0.61 +0.5 170,369 + hslO SO0163 0.64 +0.8 170,377 - hslO SO0163 0.65 +0.3 170,549 + hslO SO0163 0.85 +1.1
Or see this region's nucleotide sequence