Strain Fitness in Marinobacter adhaerens HP15 around HP15_3309

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3307 and HP15_3308 are separated by 265 nucleotidesHP15_3308 and HP15_3309 are separated by 247 nucleotidesHP15_3309 and HP15_3310 are separated by 135 nucleotidesHP15_3310 and HP15_3311 are separated by 5 nucleotides HP15_3307: HP15_3307 - transcriptional regulator, Crp/Fnr family, at 3,464,475 to 3,465,116 _3307 HP15_3308: HP15_3308 - OsmC family protein, at 3,465,382 to 3,465,804 _3308 HP15_3309: HP15_3309 - S-adenosylmethionine decarboxylase proenzyme, at 3,466,052 to 3,466,846 _3309 HP15_3310: HP15_3310 - pirin family protein, at 3,466,982 to 3,467,830 _3310 HP15_3311: HP15_3311 - phosphoribulokinase, at 3,467,836 to 3,468,702 _3311 Position (kb) 3466 3467Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3465.270 kb on - strandat 3465.391 kb on + strandat 3465.399 kb on - strandat 3465.487 kb on - strand, within HP15_3308at 3465.613 kb on - strand, within HP15_3308at 3465.679 kb on + strand, within HP15_3308at 3465.789 kb on + strandat 3465.798 kb on + strandat 3465.806 kb on - strandat 3465.806 kb on - strandat 3465.986 kb on + strandat 3466.011 kb on + strandat 3466.011 kb on + strandat 3466.011 kb on + strandat 3466.121 kb on - strandat 3466.137 kb on + strand, within HP15_3309at 3466.187 kb on + strand, within HP15_3309at 3466.200 kb on + strand, within HP15_3309at 3466.241 kb on - strand, within HP15_3309at 3466.256 kb on + strand, within HP15_3309at 3466.318 kb on - strand, within HP15_3309at 3466.411 kb on - strand, within HP15_3309at 3466.473 kb on + strand, within HP15_3309at 3466.473 kb on + strand, within HP15_3309at 3466.481 kb on - strand, within HP15_3309at 3466.599 kb on - strand, within HP15_3309at 3466.670 kb on - strand, within HP15_3309at 3466.701 kb on - strand, within HP15_3309at 3466.963 kb on - strandat 3466.965 kb on + strandat 3466.980 kb on + strandat 3467.003 kb on - strandat 3467.077 kb on - strand, within HP15_3310at 3467.110 kb on + strand, within HP15_3310at 3467.170 kb on - strand, within HP15_3310at 3467.297 kb on - strand, within HP15_3310at 3467.468 kb on + strand, within HP15_3310at 3467.481 kb on - strand, within HP15_3310at 3467.547 kb on + strand, within HP15_3310at 3467.587 kb on - strand, within HP15_3310at 3467.593 kb on + strand, within HP15_3310at 3467.604 kb on + strand, within HP15_3310at 3467.780 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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3,465,270 - +0.5
3,465,391 + -0.6
3,465,399 - +0.3
3,465,487 - HP15_3308 0.25 -0.5
3,465,613 - HP15_3308 0.55 +0.3
3,465,679 + HP15_3308 0.70 +0.1
3,465,789 + -0.1
3,465,798 + +0.2
3,465,806 - -1.7
3,465,806 - +0.0
3,465,986 + -2.4
3,466,011 + -2.2
3,466,011 + -1.4
3,466,011 + -2.8
3,466,121 - +0.3
3,466,137 + HP15_3309 0.11 -2.6
3,466,187 + HP15_3309 0.17 -1.7
3,466,200 + HP15_3309 0.19 -2.8
3,466,241 - HP15_3309 0.24 -2.9
3,466,256 + HP15_3309 0.26 -1.9
3,466,318 - HP15_3309 0.33 -1.5
3,466,411 - HP15_3309 0.45 -2.9
3,466,473 + HP15_3309 0.53 -2.0
3,466,473 + HP15_3309 0.53 -1.5
3,466,481 - HP15_3309 0.54 -1.9
3,466,599 - HP15_3309 0.69 -2.5
3,466,670 - HP15_3309 0.78 -2.5
3,466,701 - HP15_3309 0.82 -3.8
3,466,963 - -0.7
3,466,965 + +0.9
3,466,980 + -0.9
3,467,003 - +0.6
3,467,077 - HP15_3310 0.11 +0.2
3,467,110 + HP15_3310 0.15 -0.1
3,467,170 - HP15_3310 0.22 -1.1
3,467,297 - HP15_3310 0.37 -1.2
3,467,468 + HP15_3310 0.57 +1.0
3,467,481 - HP15_3310 0.59 -0.9
3,467,547 + HP15_3310 0.67 +0.4
3,467,587 - HP15_3310 0.71 -0.3
3,467,593 + HP15_3310 0.72 -0.9
3,467,604 + HP15_3310 0.73 -0.7
3,467,780 + +0.6

Or see this region's nucleotide sequence