Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3199 and HP15_3200 are separated by 13 nucleotides HP15_3200 and HP15_3201 are separated by 19 nucleotides HP15_3201 and HP15_3202 overlap by 8 nucleotides
HP15_3199: HP15_3199 - ribosomal RNA small subunit methyltransferase E, at 3,351,791 to 3,352,510
_3199
HP15_3200: HP15_3200 - membrane protein containing DUF808, at 3,352,524 to 3,353,438
_3200
HP15_3201: HP15_3201 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,353,458 to 3,354,681
_3201
HP15_3202: HP15_3202 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,354,674 to 3,355,957
_3202
Position (kb)
3353
3354
3355 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3352.616 kb on + strand, within HP15_3200 at 3352.644 kb on + strand, within HP15_3200 at 3352.662 kb on + strand, within HP15_3200 at 3352.737 kb on + strand, within HP15_3200 at 3352.915 kb on + strand, within HP15_3200 at 3352.943 kb on - strand, within HP15_3200 at 3352.993 kb on - strand, within HP15_3200 at 3353.070 kb on - strand, within HP15_3200 at 3353.140 kb on + strand, within HP15_3200 at 3353.181 kb on - strand, within HP15_3200 at 3353.296 kb on - strand, within HP15_3200 at 3353.331 kb on + strand, within HP15_3200 at 3353.375 kb on + strand at 3353.388 kb on - strand at 3353.477 kb on - strand at 3353.527 kb on - strand at 3353.622 kb on - strand, within HP15_3201 at 3353.804 kb on + strand, within HP15_3201 at 3353.812 kb on - strand, within HP15_3201 at 3353.893 kb on + strand, within HP15_3201 at 3354.061 kb on - strand, within HP15_3201 at 3354.083 kb on + strand, within HP15_3201 at 3354.192 kb on + strand, within HP15_3201 at 3354.224 kb on + strand, within HP15_3201 at 3354.252 kb on + strand, within HP15_3201 at 3354.253 kb on - strand, within HP15_3201 at 3354.293 kb on + strand, within HP15_3201 at 3354.380 kb on - strand, within HP15_3201 at 3354.382 kb on - strand, within HP15_3201 at 3354.407 kb on + strand, within HP15_3201 at 3354.425 kb on - strand, within HP15_3201 at 3354.425 kb on - strand, within HP15_3201 at 3354.425 kb on - strand, within HP15_3201 at 3354.452 kb on - strand, within HP15_3201 at 3354.565 kb on + strand at 3354.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 3,352,616 + HP15_3200 0.10 -0.5 3,352,644 + HP15_3200 0.13 +0.2 3,352,662 + HP15_3200 0.15 +1.4 3,352,737 + HP15_3200 0.23 +0.4 3,352,915 + HP15_3200 0.43 +0.2 3,352,943 - HP15_3200 0.46 -0.7 3,352,993 - HP15_3200 0.51 -0.8 3,353,070 - HP15_3200 0.60 +0.4 3,353,140 + HP15_3200 0.67 -0.1 3,353,181 - HP15_3200 0.72 -0.3 3,353,296 - HP15_3200 0.84 -0.5 3,353,331 + HP15_3200 0.88 +0.7 3,353,375 + +0.6 3,353,388 - -0.5 3,353,477 - +0.3 3,353,527 - +2.1 3,353,622 - HP15_3201 0.13 +1.8 3,353,804 + HP15_3201 0.28 +1.7 3,353,812 - HP15_3201 0.29 +1.9 3,353,893 + HP15_3201 0.36 +1.0 3,354,061 - HP15_3201 0.49 +2.1 3,354,083 + HP15_3201 0.51 +0.8 3,354,192 + HP15_3201 0.60 +2.4 3,354,224 + HP15_3201 0.63 +0.5 3,354,252 + HP15_3201 0.65 +1.8 3,354,253 - HP15_3201 0.65 +1.2 3,354,293 + HP15_3201 0.68 +2.3 3,354,380 - HP15_3201 0.75 +1.8 3,354,382 - HP15_3201 0.75 +2.6 3,354,407 + HP15_3201 0.78 +2.1 3,354,425 - HP15_3201 0.79 +1.8 3,354,425 - HP15_3201 0.79 +1.9 3,354,425 - HP15_3201 0.79 +1.3 3,354,452 - HP15_3201 0.81 +2.6 3,354,565 + +2.5 3,354,720 + -1.9
Or see this region's nucleotide sequence