Strain Fitness in Marinobacter adhaerens HP15 around HP15_3201

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3199 and HP15_3200 are separated by 13 nucleotidesHP15_3200 and HP15_3201 are separated by 19 nucleotidesHP15_3201 and HP15_3202 overlap by 8 nucleotides HP15_3199: HP15_3199 - ribosomal RNA small subunit methyltransferase E, at 3,351,791 to 3,352,510 _3199 HP15_3200: HP15_3200 - membrane protein containing DUF808, at 3,352,524 to 3,353,438 _3200 HP15_3201: HP15_3201 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,353,458 to 3,354,681 _3201 HP15_3202: HP15_3202 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,354,674 to 3,355,957 _3202 Position (kb) 3353 3354 3355Strain fitness (log2 ratio) -2 -1 0 1 2at 3352.616 kb on + strand, within HP15_3200at 3352.644 kb on + strand, within HP15_3200at 3352.662 kb on + strand, within HP15_3200at 3352.737 kb on + strand, within HP15_3200at 3352.915 kb on + strand, within HP15_3200at 3352.943 kb on - strand, within HP15_3200at 3352.993 kb on - strand, within HP15_3200at 3353.070 kb on - strand, within HP15_3200at 3353.140 kb on + strand, within HP15_3200at 3353.181 kb on - strand, within HP15_3200at 3353.296 kb on - strand, within HP15_3200at 3353.331 kb on + strand, within HP15_3200at 3353.375 kb on + strandat 3353.388 kb on - strandat 3353.477 kb on - strandat 3353.527 kb on - strandat 3353.622 kb on - strand, within HP15_3201at 3353.804 kb on + strand, within HP15_3201at 3353.812 kb on - strand, within HP15_3201at 3353.893 kb on + strand, within HP15_3201at 3354.061 kb on - strand, within HP15_3201at 3354.083 kb on + strand, within HP15_3201at 3354.192 kb on + strand, within HP15_3201at 3354.224 kb on + strand, within HP15_3201at 3354.252 kb on + strand, within HP15_3201at 3354.253 kb on - strand, within HP15_3201at 3354.293 kb on + strand, within HP15_3201at 3354.380 kb on - strand, within HP15_3201at 3354.382 kb on - strand, within HP15_3201at 3354.407 kb on + strand, within HP15_3201at 3354.425 kb on - strand, within HP15_3201at 3354.425 kb on - strand, within HP15_3201at 3354.425 kb on - strand, within HP15_3201at 3354.452 kb on - strand, within HP15_3201at 3354.565 kb on + strandat 3354.720 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
remove
3,352,616 + HP15_3200 0.10 -0.5
3,352,644 + HP15_3200 0.13 +0.2
3,352,662 + HP15_3200 0.15 +1.4
3,352,737 + HP15_3200 0.23 +0.4
3,352,915 + HP15_3200 0.43 +0.2
3,352,943 - HP15_3200 0.46 -0.7
3,352,993 - HP15_3200 0.51 -0.8
3,353,070 - HP15_3200 0.60 +0.4
3,353,140 + HP15_3200 0.67 -0.1
3,353,181 - HP15_3200 0.72 -0.3
3,353,296 - HP15_3200 0.84 -0.5
3,353,331 + HP15_3200 0.88 +0.7
3,353,375 + +0.6
3,353,388 - -0.5
3,353,477 - +0.3
3,353,527 - +2.1
3,353,622 - HP15_3201 0.13 +1.8
3,353,804 + HP15_3201 0.28 +1.7
3,353,812 - HP15_3201 0.29 +1.9
3,353,893 + HP15_3201 0.36 +1.0
3,354,061 - HP15_3201 0.49 +2.1
3,354,083 + HP15_3201 0.51 +0.8
3,354,192 + HP15_3201 0.60 +2.4
3,354,224 + HP15_3201 0.63 +0.5
3,354,252 + HP15_3201 0.65 +1.8
3,354,253 - HP15_3201 0.65 +1.2
3,354,293 + HP15_3201 0.68 +2.3
3,354,380 - HP15_3201 0.75 +1.8
3,354,382 - HP15_3201 0.75 +2.6
3,354,407 + HP15_3201 0.78 +2.1
3,354,425 - HP15_3201 0.79 +1.8
3,354,425 - HP15_3201 0.79 +1.9
3,354,425 - HP15_3201 0.79 +1.3
3,354,452 - HP15_3201 0.81 +2.6
3,354,565 + +2.5
3,354,720 + -1.9

Or see this region's nucleotide sequence