Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3089 and HP15_3090 are separated by 266 nucleotides HP15_3090 and HP15_3091 are separated by 191 nucleotides HP15_3091 and HP15_3092 are separated by 495 nucleotides
HP15_3089: HP15_3089 - sodium-dependent transporter family protein, at 3,243,262 to 3,244,821
_3089
HP15_3090: HP15_3090 - SsrA-binding protein, at 3,245,088 to 3,245,567
_3090
HP15_3091: HP15_3091 - acyltransferase, WS/DGAT/MGAT, at 3,245,759 to 3,247,126
_3091
HP15_3092: HP15_3092 - conserved hypothetical protein, at 3,247,622 to 3,248,755
_3092
Position (kb)
3245
3246
3247
3248 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3244.776 kb on + strand at 3244.812 kb on - strand at 3244.819 kb on - strand at 3245.014 kb on + strand at 3245.030 kb on + strand at 3245.636 kb on - strand at 3245.655 kb on + strand at 3245.795 kb on + strand at 3245.812 kb on - strand at 3245.842 kb on - strand at 3245.849 kb on - strand at 3245.946 kb on - strand, within HP15_3091 at 3245.976 kb on - strand, within HP15_3091 at 3246.089 kb on + strand, within HP15_3091 at 3246.181 kb on + strand, within HP15_3091 at 3246.238 kb on - strand, within HP15_3091 at 3246.251 kb on + strand, within HP15_3091 at 3246.251 kb on + strand, within HP15_3091 at 3246.251 kb on + strand, within HP15_3091 at 3246.251 kb on + strand, within HP15_3091 at 3246.259 kb on - strand, within HP15_3091 at 3246.354 kb on + strand, within HP15_3091 at 3246.354 kb on + strand, within HP15_3091 at 3246.377 kb on - strand, within HP15_3091 at 3246.398 kb on + strand, within HP15_3091 at 3246.406 kb on - strand, within HP15_3091 at 3246.447 kb on + strand, within HP15_3091 at 3246.450 kb on - strand, within HP15_3091 at 3246.486 kb on - strand, within HP15_3091 at 3246.491 kb on + strand, within HP15_3091 at 3246.499 kb on - strand, within HP15_3091 at 3246.499 kb on - strand, within HP15_3091 at 3246.523 kb on - strand, within HP15_3091 at 3246.538 kb on - strand, within HP15_3091 at 3246.583 kb on - strand, within HP15_3091 at 3246.588 kb on + strand, within HP15_3091 at 3246.621 kb on + strand, within HP15_3091 at 3246.621 kb on + strand, within HP15_3091 at 3246.621 kb on + strand, within HP15_3091 at 3246.621 kb on + strand, within HP15_3091 at 3246.629 kb on - strand, within HP15_3091 at 3246.629 kb on - strand, within HP15_3091 at 3246.673 kb on - strand, within HP15_3091 at 3246.716 kb on - strand, within HP15_3091 at 3246.757 kb on + strand, within HP15_3091 at 3246.768 kb on + strand, within HP15_3091 at 3246.776 kb on - strand, within HP15_3091 at 3246.922 kb on + strand, within HP15_3091 at 3247.014 kb on - strand at 3247.075 kb on - strand at 3247.075 kb on - strand at 3247.075 kb on - strand at 3247.128 kb on + strand at 3247.729 kb on - strand at 3247.732 kb on - strand at 3247.739 kb on - strand, within HP15_3092 at 3247.744 kb on - strand, within HP15_3092 at 3247.764 kb on + strand, within HP15_3092 at 3247.777 kb on + strand, within HP15_3092 at 3247.804 kb on - strand, within HP15_3092 at 3247.841 kb on - strand, within HP15_3092 at 3247.849 kb on - strand, within HP15_3092 at 3248.051 kb on - strand, within HP15_3092 at 3248.070 kb on + strand, within HP15_3092 at 3248.083 kb on - strand, within HP15_3092
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 3,244,776 + +0.3 3,244,812 - -0.1 3,244,819 - -0.3 3,245,014 + -1.9 3,245,030 + +0.1 3,245,636 - -3.1 3,245,655 + -0.0 3,245,795 + +0.3 3,245,812 - -0.7 3,245,842 - +0.4 3,245,849 - -0.4 3,245,946 - HP15_3091 0.14 +1.3 3,245,976 - HP15_3091 0.16 +0.2 3,246,089 + HP15_3091 0.24 -0.8 3,246,181 + HP15_3091 0.31 -1.1 3,246,238 - HP15_3091 0.35 -1.1 3,246,251 + HP15_3091 0.36 -0.0 3,246,251 + HP15_3091 0.36 -0.6 3,246,251 + HP15_3091 0.36 +0.3 3,246,251 + HP15_3091 0.36 -0.3 3,246,259 - HP15_3091 0.37 -1.0 3,246,354 + HP15_3091 0.43 -0.2 3,246,354 + HP15_3091 0.43 +0.8 3,246,377 - HP15_3091 0.45 +0.0 3,246,398 + HP15_3091 0.47 -0.6 3,246,406 - HP15_3091 0.47 -0.9 3,246,447 + HP15_3091 0.50 -2.3 3,246,450 - HP15_3091 0.51 +0.0 3,246,486 - HP15_3091 0.53 +0.3 3,246,491 + HP15_3091 0.54 -0.9 3,246,499 - HP15_3091 0.54 +0.3 3,246,499 - HP15_3091 0.54 +0.1 3,246,523 - HP15_3091 0.56 -1.4 3,246,538 - HP15_3091 0.57 +0.4 3,246,583 - HP15_3091 0.60 +0.4 3,246,588 + HP15_3091 0.61 -0.2 3,246,621 + HP15_3091 0.63 -0.0 3,246,621 + HP15_3091 0.63 -1.2 3,246,621 + HP15_3091 0.63 -0.9 3,246,621 + HP15_3091 0.63 -0.5 3,246,629 - HP15_3091 0.64 -0.7 3,246,629 - HP15_3091 0.64 +0.3 3,246,673 - HP15_3091 0.67 -0.7 3,246,716 - HP15_3091 0.70 +0.3 3,246,757 + HP15_3091 0.73 -0.3 3,246,768 + HP15_3091 0.74 -0.7 3,246,776 - HP15_3091 0.74 -0.0 3,246,922 + HP15_3091 0.85 -0.2 3,247,014 - +0.4 3,247,075 - -0.8 3,247,075 - -1.1 3,247,075 - -0.9 3,247,128 + -0.3 3,247,729 - -0.4 3,247,732 - -0.6 3,247,739 - HP15_3092 0.10 +0.3 3,247,744 - HP15_3092 0.11 -1.9 3,247,764 + HP15_3092 0.13 +0.2 3,247,777 + HP15_3092 0.14 +0.7 3,247,804 - HP15_3092 0.16 -1.0 3,247,841 - HP15_3092 0.19 +1.8 3,247,849 - HP15_3092 0.20 -0.1 3,248,051 - HP15_3092 0.38 +0.0 3,248,070 + HP15_3092 0.40 +0.0 3,248,083 - HP15_3092 0.41 +2.0
Or see this region's nucleotide sequence