Strain Fitness in Marinobacter adhaerens HP15 around HP15_3065

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3063 and HP15_3064 are separated by 288 nucleotidesHP15_3064 and HP15_3065 are separated by 78 nucleotidesHP15_3065 and HP15_3066 overlap by 4 nucleotidesHP15_3066 and HP15_3067 overlap by 1 nucleotides HP15_3063: HP15_3063 - polynucleotide phosphorylase/polyadenylase, at 3,214,408 to 3,216,591 _3063 HP15_3064: HP15_3064 - ribosomal protein S15, bacterial-type, at 3,216,880 to 3,217,149 _3064 HP15_3065: HP15_3065 - tRNA pseudouridine synthase B, at 3,217,228 to 3,218,169 _3065 HP15_3066: HP15_3066 - ribosome-binding factor A, at 3,218,166 to 3,218,588 _3066 HP15_3067: HP15_3067 - translation initiation factor IF-2, at 3,218,588 to 3,221,137 _3067 Position (kb) 3217 3218 3219Strain fitness (log2 ratio) -3 -2 -1 0 1at 3216.854 kb on - strandat 3217.437 kb on - strand, within HP15_3065at 3217.439 kb on + strand, within HP15_3065at 3217.529 kb on + strand, within HP15_3065at 3217.567 kb on - strand, within HP15_3065at 3217.574 kb on + strand, within HP15_3065at 3217.576 kb on + strand, within HP15_3065at 3217.591 kb on + strand, within HP15_3065at 3217.599 kb on - strand, within HP15_3065at 3217.599 kb on - strand, within HP15_3065at 3217.638 kb on - strand, within HP15_3065at 3217.795 kb on - strand, within HP15_3065at 3217.796 kb on + strand, within HP15_3065at 3217.922 kb on + strand, within HP15_3065at 3217.937 kb on + strand, within HP15_3065at 3217.942 kb on + strand, within HP15_3065at 3217.943 kb on + strand, within HP15_3065at 3218.463 kb on + strand, within HP15_3066

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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3,216,854 - -0.5
3,217,437 - HP15_3065 0.22 -0.7
3,217,439 + HP15_3065 0.22 -0.9
3,217,529 + HP15_3065 0.32 +0.5
3,217,567 - HP15_3065 0.36 -2.7
3,217,574 + HP15_3065 0.37 -1.3
3,217,576 + HP15_3065 0.37 -2.5
3,217,591 + HP15_3065 0.39 -2.2
3,217,599 - HP15_3065 0.39 -0.3
3,217,599 - HP15_3065 0.39 -0.9
3,217,638 - HP15_3065 0.44 +0.5
3,217,795 - HP15_3065 0.60 -0.5
3,217,796 + HP15_3065 0.60 -0.8
3,217,922 + HP15_3065 0.74 -2.6
3,217,937 + HP15_3065 0.75 -0.7
3,217,942 + HP15_3065 0.76 -1.3
3,217,943 + HP15_3065 0.76 -0.6
3,218,463 + HP15_3066 0.70 -3.1

Or see this region's nucleotide sequence