Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2476 and HP15_2477 are separated by 244 nucleotides HP15_2477 and HP15_2478 are separated by 89 nucleotides HP15_2478 and HP15_2479 are separated by 241 nucleotides
HP15_2476: HP15_2476 - conserved hypothetical protein, at 2,616,812 to 2,617,084
_2476
HP15_2477: HP15_2477 - endonuclease I, at 2,617,329 to 2,617,907
_2477
HP15_2478: HP15_2478 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) , at 2,617,997 to 2,619,757
_2478
HP15_2479: HP15_2479 - acyl-CoA dehydrogenase family protein, at 2,619,999 to 2,621,870
_2479
Position (kb)
2617
2618
2619
2620 Strain fitness (log2 ratio)
-1
0
1
2 at 2617.031 kb on - strand, within HP15_2476 at 2617.087 kb on + strand at 2617.095 kb on - strand at 2617.299 kb on + strand at 2617.307 kb on - strand at 2617.326 kb on - strand at 2617.382 kb on + strand at 2617.390 kb on - strand, within HP15_2477 at 2617.424 kb on + strand, within HP15_2477 at 2617.500 kb on + strand, within HP15_2477 at 2617.525 kb on + strand, within HP15_2477 at 2617.578 kb on + strand, within HP15_2477 at 2617.730 kb on + strand, within HP15_2477 at 2617.747 kb on + strand, within HP15_2477 at 2617.755 kb on - strand, within HP15_2477 at 2617.788 kb on + strand, within HP15_2477 at 2617.788 kb on + strand, within HP15_2477 at 2617.798 kb on + strand, within HP15_2477 at 2617.806 kb on - strand, within HP15_2477 at 2617.806 kb on - strand, within HP15_2477 at 2617.908 kb on - strand at 2618.013 kb on - strand at 2618.103 kb on + strand at 2618.103 kb on + strand at 2618.217 kb on - strand, within HP15_2478 at 2618.375 kb on + strand, within HP15_2478 at 2618.405 kb on - strand, within HP15_2478 at 2618.501 kb on + strand, within HP15_2478 at 2618.708 kb on - strand, within HP15_2478 at 2618.799 kb on - strand, within HP15_2478 at 2618.799 kb on - strand, within HP15_2478 at 2618.858 kb on + strand, within HP15_2478 at 2618.858 kb on + strand, within HP15_2478 at 2618.866 kb on - strand, within HP15_2478 at 2619.110 kb on + strand, within HP15_2478 at 2619.140 kb on + strand, within HP15_2478 at 2619.181 kb on + strand, within HP15_2478 at 2619.292 kb on + strand, within HP15_2478 at 2619.318 kb on + strand, within HP15_2478 at 2619.318 kb on + strand, within HP15_2478 at 2619.362 kb on - strand, within HP15_2478 at 2619.462 kb on + strand, within HP15_2478 at 2619.619 kb on - strand at 2619.641 kb on - strand at 2619.704 kb on - strand at 2619.864 kb on + strand at 2620.119 kb on - strand at 2620.119 kb on - strand at 2620.139 kb on + strand at 2620.164 kb on + strand at 2620.264 kb on - strand, within HP15_2479 at 2620.395 kb on + strand, within HP15_2479 at 2620.411 kb on + strand, within HP15_2479 at 2620.419 kb on - strand, within HP15_2479 at 2620.539 kb on + strand, within HP15_2479 at 2620.557 kb on - strand, within HP15_2479 at 2620.572 kb on - strand, within HP15_2479 at 2620.663 kb on - strand, within HP15_2479
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 2,617,031 - HP15_2476 0.80 -0.8 2,617,087 + +0.3 2,617,095 - -0.1 2,617,299 + +0.5 2,617,307 - +1.5 2,617,326 - +1.8 2,617,382 + +0.0 2,617,390 - HP15_2477 0.11 +0.2 2,617,424 + HP15_2477 0.16 +0.3 2,617,500 + HP15_2477 0.30 -0.2 2,617,525 + HP15_2477 0.34 +0.0 2,617,578 + HP15_2477 0.43 +0.0 2,617,730 + HP15_2477 0.69 +0.4 2,617,747 + HP15_2477 0.72 -1.2 2,617,755 - HP15_2477 0.74 +1.0 2,617,788 + HP15_2477 0.79 -0.2 2,617,788 + HP15_2477 0.79 +1.1 2,617,798 + HP15_2477 0.81 -0.5 2,617,806 - HP15_2477 0.82 -0.1 2,617,806 - HP15_2477 0.82 +0.1 2,617,908 - -1.0 2,618,013 - +0.3 2,618,103 + +0.9 2,618,103 + +0.9 2,618,217 - HP15_2478 0.12 +0.9 2,618,375 + HP15_2478 0.21 +1.8 2,618,405 - HP15_2478 0.23 +0.8 2,618,501 + HP15_2478 0.29 +0.3 2,618,708 - HP15_2478 0.40 +0.2 2,618,799 - HP15_2478 0.46 +0.6 2,618,799 - HP15_2478 0.46 +0.7 2,618,858 + HP15_2478 0.49 +0.6 2,618,858 + HP15_2478 0.49 +1.1 2,618,866 - HP15_2478 0.49 +0.4 2,619,110 + HP15_2478 0.63 +0.4 2,619,140 + HP15_2478 0.65 +1.0 2,619,181 + HP15_2478 0.67 +0.2 2,619,292 + HP15_2478 0.74 +1.3 2,619,318 + HP15_2478 0.75 +1.7 2,619,318 + HP15_2478 0.75 +0.2 2,619,362 - HP15_2478 0.78 +0.7 2,619,462 + HP15_2478 0.83 +0.8 2,619,619 - +1.2 2,619,641 - +1.3 2,619,704 - +0.6 2,619,864 + +0.5 2,620,119 - -0.2 2,620,119 - +0.2 2,620,139 + +0.1 2,620,164 + -0.1 2,620,264 - HP15_2479 0.14 -0.9 2,620,395 + HP15_2479 0.21 +0.8 2,620,411 + HP15_2479 0.22 -0.3 2,620,419 - HP15_2479 0.22 +0.0 2,620,539 + HP15_2479 0.29 +1.1 2,620,557 - HP15_2479 0.30 +0.1 2,620,572 - HP15_2479 0.31 -0.1 2,620,663 - HP15_2479 0.35 -0.2
Or see this region's nucleotide sequence