Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2219 and HP15_2220 are separated by 39 nucleotides HP15_2220 and HP15_2221 overlap by 4 nucleotides HP15_2221 and HP15_2222 are separated by 604 nucleotides
HP15_2219: HP15_2219 - family S49 unassigned peptidase, at 2,335,315 to 2,336,358
_2219
HP15_2220: HP15_2220 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 2,336,398 to 2,337,045
_2220
HP15_2221: HP15_2221 - pseudouridine synthase, RluA family, at 2,337,042 to 2,338,100
_2221
HP15_2222: HP15_2222 - ribonuclease, Rne/Rng family, at 2,338,705 to 2,341,929
_2222
Position (kb)
2337
2338
2339 Strain fitness (log2 ratio)
-2
-1
0
1 at 2336.106 kb on + strand, within HP15_2219 at 2336.114 kb on - strand, within HP15_2219 at 2336.150 kb on - strand, within HP15_2219 at 2336.191 kb on - strand, within HP15_2219 at 2336.193 kb on + strand, within HP15_2219 at 2336.193 kb on + strand, within HP15_2219 at 2336.201 kb on - strand, within HP15_2219 at 2336.201 kb on - strand, within HP15_2219 at 2336.396 kb on + strand at 2336.469 kb on + strand, within HP15_2220 at 2336.645 kb on - strand, within HP15_2220 at 2336.677 kb on + strand, within HP15_2220 at 2336.756 kb on + strand, within HP15_2220 at 2336.798 kb on + strand, within HP15_2220 at 2336.932 kb on + strand, within HP15_2220 at 2336.955 kb on - strand, within HP15_2220 at 2336.975 kb on - strand, within HP15_2220 at 2336.994 kb on - strand at 2337.011 kb on - strand at 2337.279 kb on + strand, within HP15_2221 at 2337.287 kb on - strand, within HP15_2221 at 2337.346 kb on - strand, within HP15_2221 at 2337.346 kb on - strand, within HP15_2221 at 2337.387 kb on - strand, within HP15_2221 at 2337.421 kb on - strand, within HP15_2221 at 2337.443 kb on + strand, within HP15_2221 at 2337.571 kb on - strand, within HP15_2221 at 2337.571 kb on - strand, within HP15_2221 at 2337.576 kb on - strand, within HP15_2221 at 2337.582 kb on - strand, within HP15_2221 at 2337.625 kb on + strand, within HP15_2221 at 2337.674 kb on + strand, within HP15_2221 at 2337.760 kb on - strand, within HP15_2221 at 2337.913 kb on + strand, within HP15_2221 at 2337.921 kb on - strand, within HP15_2221 at 2337.953 kb on - strand, within HP15_2221 at 2337.985 kb on - strand, within HP15_2221 at 2338.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 2,336,106 + HP15_2219 0.76 +0.2 2,336,114 - HP15_2219 0.77 +0.2 2,336,150 - HP15_2219 0.80 +0.6 2,336,191 - HP15_2219 0.84 -0.4 2,336,193 + HP15_2219 0.84 +0.3 2,336,193 + HP15_2219 0.84 +1.1 2,336,201 - HP15_2219 0.85 +0.2 2,336,201 - HP15_2219 0.85 +0.8 2,336,396 + +0.4 2,336,469 + HP15_2220 0.11 -0.4 2,336,645 - HP15_2220 0.38 -0.9 2,336,677 + HP15_2220 0.43 -0.6 2,336,756 + HP15_2220 0.55 -0.7 2,336,798 + HP15_2220 0.62 +0.3 2,336,932 + HP15_2220 0.82 -1.4 2,336,955 - HP15_2220 0.86 +0.7 2,336,975 - HP15_2220 0.89 +1.3 2,336,994 - +0.5 2,337,011 - -0.9 2,337,279 + HP15_2221 0.22 -0.9 2,337,287 - HP15_2221 0.23 -0.6 2,337,346 - HP15_2221 0.29 -1.3 2,337,346 - HP15_2221 0.29 -2.7 2,337,387 - HP15_2221 0.33 -1.1 2,337,421 - HP15_2221 0.36 -1.9 2,337,443 + HP15_2221 0.38 -1.3 2,337,571 - HP15_2221 0.50 -0.3 2,337,571 - HP15_2221 0.50 -2.4 2,337,576 - HP15_2221 0.50 -1.2 2,337,582 - HP15_2221 0.51 -2.2 2,337,625 + HP15_2221 0.55 -0.9 2,337,674 + HP15_2221 0.60 -1.7 2,337,760 - HP15_2221 0.68 -0.6 2,337,913 + HP15_2221 0.82 -1.3 2,337,921 - HP15_2221 0.83 -0.7 2,337,953 - HP15_2221 0.86 -0.8 2,337,985 - HP15_2221 0.89 -2.4 2,338,113 + +0.8
Or see this region's nucleotide sequence