Strain Fitness in Marinobacter adhaerens HP15 around HP15_1871

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1869 and HP15_1870 are separated by 57 nucleotidesHP15_1870 and HP15_1871 are separated by 0 nucleotidesHP15_1871 and HP15_1872 overlap by 11 nucleotides HP15_1869: HP15_1869 - biopolymer transport protein, at 1,974,409 to 1,974,990 _1869 HP15_1870: HP15_1870 - conserved hypothetical protein, secreted, at 1,975,048 to 1,975,395 _1870 HP15_1871: HP15_1871 - TPR repeat protein, at 1,975,396 to 1,975,878 _1871 HP15_1872: HP15_1872 - tetratricopeptide TPR_2 repeat protein, at 1,975,868 to 1,978,639 _1872 Position (kb) 1975 1976Strain fitness (log2 ratio) -3 -2 -1 0 1at 1974.425 kb on + strandat 1974.486 kb on + strand, within HP15_1869at 1974.492 kb on - strand, within HP15_1869at 1974.492 kb on - strand, within HP15_1869at 1974.676 kb on - strand, within HP15_1869at 1974.681 kb on - strand, within HP15_1869at 1974.772 kb on + strand, within HP15_1869at 1974.820 kb on + strand, within HP15_1869at 1974.988 kb on + strandat 1975.021 kb on + strandat 1975.039 kb on + strandat 1975.203 kb on + strand, within HP15_1870at 1975.203 kb on + strand, within HP15_1870at 1975.211 kb on - strand, within HP15_1870at 1975.490 kb on - strand, within HP15_1871at 1975.491 kb on - strand, within HP15_1871at 1975.604 kb on + strand, within HP15_1871at 1975.657 kb on + strand, within HP15_1871at 1975.676 kb on + strand, within HP15_1871at 1975.951 kb on + strandat 1975.959 kb on - strandat 1975.976 kb on - strandat 1975.984 kb on - strandat 1975.984 kb on - strandat 1976.020 kb on + strandat 1976.190 kb on - strand, within HP15_1872at 1976.363 kb on + strand, within HP15_1872at 1976.370 kb on + strand, within HP15_1872at 1976.380 kb on + strand, within HP15_1872at 1976.383 kb on - strand, within HP15_1872at 1976.383 kb on - strand, within HP15_1872at 1976.383 kb on - strand, within HP15_1872at 1976.383 kb on - strand, within HP15_1872at 1976.390 kb on + strand, within HP15_1872at 1976.390 kb on + strand, within HP15_1872at 1976.398 kb on - strand, within HP15_1872at 1976.398 kb on - strand, within HP15_1872at 1976.459 kb on - strand, within HP15_1872at 1976.461 kb on + strand, within HP15_1872at 1976.572 kb on + strand, within HP15_1872at 1976.580 kb on - strand, within HP15_1872at 1976.650 kb on + strand, within HP15_1872at 1976.854 kb on + strand, within HP15_1872

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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1,974,425 + -0.1
1,974,486 + HP15_1869 0.13 -0.7
1,974,492 - HP15_1869 0.14 -0.7
1,974,492 - HP15_1869 0.14 -0.6
1,974,676 - HP15_1869 0.46 -0.9
1,974,681 - HP15_1869 0.47 -0.1
1,974,772 + HP15_1869 0.62 -0.0
1,974,820 + HP15_1869 0.71 -3.1
1,974,988 + -1.2
1,975,021 + -0.4
1,975,039 + +0.4
1,975,203 + HP15_1870 0.45 -1.3
1,975,203 + HP15_1870 0.45 -0.2
1,975,211 - HP15_1870 0.47 -0.5
1,975,490 - HP15_1871 0.19 +0.7
1,975,491 - HP15_1871 0.20 -0.5
1,975,604 + HP15_1871 0.43 +0.6
1,975,657 + HP15_1871 0.54 +0.1
1,975,676 + HP15_1871 0.58 +1.2
1,975,951 + +0.1
1,975,959 - -0.1
1,975,976 - -0.3
1,975,984 - -0.8
1,975,984 - -1.2
1,976,020 + +0.0
1,976,190 - HP15_1872 0.12 +0.3
1,976,363 + HP15_1872 0.18 +0.9
1,976,370 + HP15_1872 0.18 -0.6
1,976,380 + HP15_1872 0.18 +0.5
1,976,383 - HP15_1872 0.19 +0.0
1,976,383 - HP15_1872 0.19 -0.4
1,976,383 - HP15_1872 0.19 -0.5
1,976,383 - HP15_1872 0.19 +0.8
1,976,390 + HP15_1872 0.19 +0.2
1,976,390 + HP15_1872 0.19 -0.6
1,976,398 - HP15_1872 0.19 +0.0
1,976,398 - HP15_1872 0.19 +0.1
1,976,459 - HP15_1872 0.21 +0.5
1,976,461 + HP15_1872 0.21 +0.3
1,976,572 + HP15_1872 0.25 -2.7
1,976,580 - HP15_1872 0.26 +0.2
1,976,650 + HP15_1872 0.28 +0.7
1,976,854 + HP15_1872 0.36 -1.5

Or see this region's nucleotide sequence