Strain Fitness in Marinobacter adhaerens HP15 around HP15_1857

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1856 and HP15_1857 overlap by 1 nucleotidesHP15_1857 and HP15_1858 are separated by 2 nucleotides HP15_1856: HP15_1856 - helicase c2, at 1,957,213 to 1,959,417 _1856 HP15_1857: HP15_1857 - conserved hypothetical protein, at 1,959,417 to 1,960,142 _1857 HP15_1858: HP15_1858 - peptidoglycan-binding domain 1 protein, at 1,960,145 to 1,961,851 _1858 Position (kb) 1959 1960 1961Strain fitness (log2 ratio) -2 -1 0 1at 1958.474 kb on - strand, within HP15_1856at 1958.688 kb on + strand, within HP15_1856at 1958.893 kb on + strand, within HP15_1856at 1958.990 kb on + strand, within HP15_1856at 1959.173 kb on + strand, within HP15_1856at 1959.247 kb on + strandat 1959.438 kb on - strandat 1959.474 kb on + strandat 1959.475 kb on + strandat 1959.518 kb on - strand, within HP15_1857at 1959.542 kb on + strand, within HP15_1857at 1959.764 kb on + strand, within HP15_1857at 1959.811 kb on + strand, within HP15_1857at 1959.953 kb on - strand, within HP15_1857at 1960.009 kb on - strand, within HP15_1857at 1960.078 kb on - strandat 1960.129 kb on + strandat 1960.188 kb on + strandat 1960.196 kb on - strandat 1960.295 kb on + strandat 1960.374 kb on - strand, within HP15_1858at 1960.577 kb on - strand, within HP15_1858at 1960.699 kb on - strand, within HP15_1858at 1960.903 kb on + strand, within HP15_1858at 1960.996 kb on + strand, within HP15_1858at 1961.088 kb on + strand, within HP15_1858at 1961.110 kb on + strand, within HP15_1858

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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1,958,474 - HP15_1856 0.57 -0.3
1,958,688 + HP15_1856 0.67 -0.3
1,958,893 + HP15_1856 0.76 -0.2
1,958,990 + HP15_1856 0.81 -1.5
1,959,173 + HP15_1856 0.89 -0.6
1,959,247 + +0.4
1,959,438 - -0.2
1,959,474 + +0.1
1,959,475 + +1.4
1,959,518 - HP15_1857 0.14 -2.3
1,959,542 + HP15_1857 0.17 -2.0
1,959,764 + HP15_1857 0.48 -1.0
1,959,811 + HP15_1857 0.54 +0.0
1,959,953 - HP15_1857 0.74 -0.1
1,960,009 - HP15_1857 0.82 -0.8
1,960,078 - +1.2
1,960,129 + +0.9
1,960,188 + +0.3
1,960,196 - -0.8
1,960,295 + -0.0
1,960,374 - HP15_1858 0.13 +0.8
1,960,577 - HP15_1858 0.25 +1.0
1,960,699 - HP15_1858 0.32 +1.1
1,960,903 + HP15_1858 0.44 -1.2
1,960,996 + HP15_1858 0.50 +0.3
1,961,088 + HP15_1858 0.55 -0.2
1,961,110 + HP15_1858 0.57 -1.0

Or see this region's nucleotide sequence