Strain Fitness in Marinobacter adhaerens HP15 around HP15_1530

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1528 and HP15_1529 are separated by 42 nucleotidesHP15_1529 and HP15_1530 are separated by 39 nucleotidesHP15_1530 and HP15_1531 are separated by 3 nucleotides HP15_1528: HP15_1528 - chromosome segregation and condensation protein ScpA, at 1,610,053 to 1,610,886 _1528 HP15_1529: HP15_1529 - transcriptional regulator, at 1,610,929 to 1,611,567 _1529 HP15_1530: HP15_1530 - RNA-binding S4 domain protein, at 1,611,607 to 1,612,590 _1530 HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520 _1531 Position (kb) 1611 1612 1613Strain fitness (log2 ratio) -1 0 1at 1610.798 kb on + strand, within HP15_1528at 1610.808 kb on + strandat 1610.946 kb on + strandat 1611.074 kb on - strand, within HP15_1529at 1611.316 kb on + strand, within HP15_1529at 1611.366 kb on - strand, within HP15_1529at 1611.643 kb on + strandat 1611.676 kb on - strandat 1611.853 kb on + strand, within HP15_1530at 1611.853 kb on + strand, within HP15_1530at 1611.911 kb on + strand, within HP15_1530at 1612.092 kb on - strand, within HP15_1530at 1612.587 kb on - strandat 1612.587 kb on - strandat 1612.624 kb on + strandat 1612.624 kb on + strandat 1612.630 kb on + strandat 1612.638 kb on - strandat 1612.678 kb on + strandat 1612.791 kb on + strand, within HP15_1531at 1612.812 kb on + strand, within HP15_1531at 1612.932 kb on + strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1613.205 kb on + strand, within HP15_1531at 1613.247 kb on + strand, within HP15_1531at 1613.264 kb on - strand, within HP15_1531at 1613.266 kb on + strand, within HP15_1531at 1613.357 kb on - strand, within HP15_1531

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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1,610,798 + HP15_1528 0.89 -0.3
1,610,808 + -0.8
1,610,946 + -0.3
1,611,074 - HP15_1529 0.23 -1.2
1,611,316 + HP15_1529 0.61 -1.1
1,611,366 - HP15_1529 0.68 +0.6
1,611,643 + +1.6
1,611,676 - +1.5
1,611,853 + HP15_1530 0.25 +1.5
1,611,853 + HP15_1530 0.25 +0.9
1,611,911 + HP15_1530 0.31 +1.2
1,612,092 - HP15_1530 0.49 +0.7
1,612,587 - -0.1
1,612,587 - +1.0
1,612,624 + -0.4
1,612,624 + -0.1
1,612,630 + +0.7
1,612,638 - +0.6
1,612,678 + +0.9
1,612,791 + HP15_1531 0.21 +0.8
1,612,812 + HP15_1531 0.24 +0.2
1,612,932 + HP15_1531 0.36 +0.7
1,612,966 - HP15_1531 0.40 +0.1
1,612,966 - HP15_1531 0.40 +0.2
1,612,966 - HP15_1531 0.40 +0.1
1,613,205 + HP15_1531 0.66 +0.2
1,613,247 + HP15_1531 0.70 -0.1
1,613,264 - HP15_1531 0.72 +0.2
1,613,266 + HP15_1531 0.72 -0.7
1,613,357 - HP15_1531 0.82 +0.7

Or see this region's nucleotide sequence