Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1334 and HP15_1335 are separated by 9 nucleotides HP15_1335 and HP15_1336 are separated by 116 nucleotides HP15_1336 and HP15_1337 are separated by 62 nucleotides
HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data) , at 1,402,295 to 1,403,713
_1334
HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412
_1335
HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888
_1336
HP15_1337: HP15_1337 - conserved hypothetical protein, membrane, at 1,404,951 to 1,405,226
_1337
Position (kb)
1403
1404
1405 Strain fitness (log2 ratio)
-2
-1
0
1 at 1402.968 kb on + strand, within HP15_1334 at 1402.978 kb on + strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.179 kb on - strand, within HP15_1334 at 1403.250 kb on + strand, within HP15_1334 at 1403.305 kb on - strand, within HP15_1334 at 1403.312 kb on + strand, within HP15_1334 at 1403.343 kb on - strand, within HP15_1334 at 1403.419 kb on - strand, within HP15_1334 at 1403.468 kb on + strand, within HP15_1334 at 1403.516 kb on - strand, within HP15_1334 at 1403.605 kb on - strand at 1403.755 kb on - strand at 1403.780 kb on - strand at 1403.917 kb on - strand, within HP15_1335 at 1403.919 kb on + strand, within HP15_1335 at 1403.932 kb on + strand, within HP15_1335 at 1403.949 kb on - strand, within HP15_1335 at 1403.974 kb on + strand, within HP15_1335 at 1404.095 kb on + strand, within HP15_1335 at 1404.105 kb on + strand, within HP15_1335 at 1404.108 kb on - strand, within HP15_1335 at 1404.136 kb on + strand, within HP15_1335 at 1404.278 kb on + strand, within HP15_1335 at 1404.361 kb on + strand at 1404.381 kb on + strand at 1404.403 kb on - strand at 1404.549 kb on + strand at 1404.564 kb on - strand at 1404.571 kb on - strand, within HP15_1336 at 1404.710 kb on + strand, within HP15_1336 at 1404.718 kb on - strand, within HP15_1336 at 1404.847 kb on - strand, within HP15_1336 at 1404.847 kb on - strand, within HP15_1336 at 1404.876 kb on - strand at 1404.954 kb on + strand at 1404.990 kb on - strand, within HP15_1337 at 1405.034 kb on - strand, within HP15_1337 at 1405.271 kb on - strand at 1405.396 kb on + strand at 1405.401 kb on + strand at 1405.401 kb on + strand at 1405.409 kb on - strand at 1405.409 kb on - strand at 1405.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 1,402,968 + HP15_1334 0.47 -0.3 1,402,978 + HP15_1334 0.48 -0.1 1,403,179 - HP15_1334 0.62 +0.5 1,403,179 - HP15_1334 0.62 -0.2 1,403,250 + HP15_1334 0.67 -0.3 1,403,305 - HP15_1334 0.71 +0.7 1,403,312 + HP15_1334 0.72 -0.0 1,403,343 - HP15_1334 0.74 -0.8 1,403,419 - HP15_1334 0.79 +0.9 1,403,468 + HP15_1334 0.83 +0.4 1,403,516 - HP15_1334 0.86 +0.4 1,403,605 - +0.9 1,403,755 - +0.0 1,403,780 - -0.4 1,403,917 - HP15_1335 0.28 +0.5 1,403,919 + HP15_1335 0.28 -0.6 1,403,932 + HP15_1335 0.30 -2.4 1,403,949 - HP15_1335 0.33 -0.5 1,403,974 + HP15_1335 0.36 -1.2 1,404,095 + HP15_1335 0.54 -0.2 1,404,105 + HP15_1335 0.55 +0.5 1,404,108 - HP15_1335 0.56 -0.4 1,404,136 + HP15_1335 0.60 +0.4 1,404,278 + HP15_1335 0.80 -1.2 1,404,361 + -0.9 1,404,381 + +0.4 1,404,403 - -0.4 1,404,549 + -0.6 1,404,564 - -1.8 1,404,571 - HP15_1336 0.12 -1.4 1,404,710 + HP15_1336 0.50 +0.1 1,404,718 - HP15_1336 0.53 +0.4 1,404,847 - HP15_1336 0.88 +0.5 1,404,847 - HP15_1336 0.88 +0.9 1,404,876 - +0.1 1,404,954 + +0.6 1,404,990 - HP15_1337 0.14 +0.1 1,405,034 - HP15_1337 0.30 -1.1 1,405,271 - +0.5 1,405,396 + -0.1 1,405,401 + +0.3 1,405,401 + +0.1 1,405,409 - -0.0 1,405,409 - +0.6 1,405,409 - +0.3
Or see this region's nucleotide sequence