Strain Fitness in Marinobacter adhaerens HP15 around HP15_1335

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1334 and HP15_1335 are separated by 9 nucleotidesHP15_1335 and HP15_1336 are separated by 116 nucleotidesHP15_1336 and HP15_1337 are separated by 62 nucleotides HP15_1334: HP15_1334 - Error-prone polymerase for DNA repair (imuB or polY like) (from data), at 1,402,295 to 1,403,713 _1334 HP15_1335: HP15_1335 - uncharacterized conserved protein UCP037290, at 1,403,723 to 1,404,412 _1335 HP15_1336: HP15_1336 - pterin-4-alpha-carbinolamine dehydratase, at 1,404,529 to 1,404,888 _1336 HP15_1337: HP15_1337 - conserved hypothetical protein, membrane, at 1,404,951 to 1,405,226 _1337 Position (kb) 1403 1404 1405Strain fitness (log2 ratio) -2 -1 0 1at 1402.968 kb on + strand, within HP15_1334at 1402.978 kb on + strand, within HP15_1334at 1403.179 kb on - strand, within HP15_1334at 1403.179 kb on - strand, within HP15_1334at 1403.250 kb on + strand, within HP15_1334at 1403.305 kb on - strand, within HP15_1334at 1403.312 kb on + strand, within HP15_1334at 1403.343 kb on - strand, within HP15_1334at 1403.419 kb on - strand, within HP15_1334at 1403.468 kb on + strand, within HP15_1334at 1403.516 kb on - strand, within HP15_1334at 1403.605 kb on - strandat 1403.755 kb on - strandat 1403.780 kb on - strandat 1403.917 kb on - strand, within HP15_1335at 1403.919 kb on + strand, within HP15_1335at 1403.932 kb on + strand, within HP15_1335at 1403.949 kb on - strand, within HP15_1335at 1403.974 kb on + strand, within HP15_1335at 1404.095 kb on + strand, within HP15_1335at 1404.105 kb on + strand, within HP15_1335at 1404.108 kb on - strand, within HP15_1335at 1404.136 kb on + strand, within HP15_1335at 1404.278 kb on + strand, within HP15_1335at 1404.361 kb on + strandat 1404.381 kb on + strandat 1404.403 kb on - strandat 1404.549 kb on + strandat 1404.564 kb on - strandat 1404.571 kb on - strand, within HP15_1336at 1404.710 kb on + strand, within HP15_1336at 1404.718 kb on - strand, within HP15_1336at 1404.847 kb on - strand, within HP15_1336at 1404.847 kb on - strand, within HP15_1336at 1404.876 kb on - strandat 1404.954 kb on + strandat 1404.990 kb on - strand, within HP15_1337at 1405.034 kb on - strand, within HP15_1337at 1405.271 kb on - strandat 1405.396 kb on + strandat 1405.401 kb on + strandat 1405.401 kb on + strandat 1405.409 kb on - strandat 1405.409 kb on - strandat 1405.409 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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1,402,968 + HP15_1334 0.47 -0.3
1,402,978 + HP15_1334 0.48 -0.1
1,403,179 - HP15_1334 0.62 +0.5
1,403,179 - HP15_1334 0.62 -0.2
1,403,250 + HP15_1334 0.67 -0.3
1,403,305 - HP15_1334 0.71 +0.7
1,403,312 + HP15_1334 0.72 -0.0
1,403,343 - HP15_1334 0.74 -0.8
1,403,419 - HP15_1334 0.79 +0.9
1,403,468 + HP15_1334 0.83 +0.4
1,403,516 - HP15_1334 0.86 +0.4
1,403,605 - +0.9
1,403,755 - +0.0
1,403,780 - -0.4
1,403,917 - HP15_1335 0.28 +0.5
1,403,919 + HP15_1335 0.28 -0.6
1,403,932 + HP15_1335 0.30 -2.4
1,403,949 - HP15_1335 0.33 -0.5
1,403,974 + HP15_1335 0.36 -1.2
1,404,095 + HP15_1335 0.54 -0.2
1,404,105 + HP15_1335 0.55 +0.5
1,404,108 - HP15_1335 0.56 -0.4
1,404,136 + HP15_1335 0.60 +0.4
1,404,278 + HP15_1335 0.80 -1.2
1,404,361 + -0.9
1,404,381 + +0.4
1,404,403 - -0.4
1,404,549 + -0.6
1,404,564 - -1.8
1,404,571 - HP15_1336 0.12 -1.4
1,404,710 + HP15_1336 0.50 +0.1
1,404,718 - HP15_1336 0.53 +0.4
1,404,847 - HP15_1336 0.88 +0.5
1,404,847 - HP15_1336 0.88 +0.9
1,404,876 - +0.1
1,404,954 + +0.6
1,404,990 - HP15_1337 0.14 +0.1
1,405,034 - HP15_1337 0.30 -1.1
1,405,271 - +0.5
1,405,396 + -0.1
1,405,401 + +0.3
1,405,401 + +0.1
1,405,409 - -0.0
1,405,409 - +0.6
1,405,409 - +0.3

Or see this region's nucleotide sequence