Strain Fitness in Marinobacter adhaerens HP15 around HP15_1229

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1228 and HP15_1229 are separated by 112 nucleotidesHP15_1229 and HP15_1230 overlap by 12 nucleotidesHP15_1230 and HP15_1231 are separated by 19 nucleotides HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290 _1228 HP15_1229: HP15_1229 - translation initiation factor, aIF-2BI family, at 1,277,403 to 1,278,467 _1229 HP15_1230: HP15_1230 - hypothetical protein containing helix-turn-helix motif, at 1,278,456 to 1,279,256 _1230 HP15_1231: HP15_1231 - periplasmic tail-specific proteinase, at 1,279,276 to 1,281,399 _1231 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1at 1276.405 kb on - strand, within HP15_1228at 1276.416 kb on - strand, within HP15_1228at 1276.700 kb on - strand, within HP15_1228at 1276.700 kb on - strand, within HP15_1228at 1276.827 kb on - strand, within HP15_1228at 1277.048 kb on - strand, within HP15_1228at 1277.048 kb on - strand, within HP15_1228at 1277.081 kb on - strand, within HP15_1228at 1277.153 kb on - strand, within HP15_1228at 1277.241 kb on - strandat 1277.321 kb on - strandat 1277.350 kb on + strandat 1277.370 kb on + strandat 1277.414 kb on + strandat 1277.473 kb on + strandat 1277.473 kb on + strandat 1277.473 kb on + strandat 1277.481 kb on - strandat 1277.526 kb on - strand, within HP15_1229at 1277.554 kb on + strand, within HP15_1229at 1277.570 kb on + strand, within HP15_1229at 1277.646 kb on + strand, within HP15_1229at 1277.864 kb on - strand, within HP15_1229at 1277.932 kb on + strand, within HP15_1229at 1277.966 kb on + strand, within HP15_1229at 1277.992 kb on - strand, within HP15_1229at 1278.010 kb on + strand, within HP15_1229at 1278.018 kb on - strand, within HP15_1229at 1278.019 kb on - strand, within HP15_1229at 1278.034 kb on + strand, within HP15_1229at 1278.068 kb on - strand, within HP15_1229at 1278.203 kb on - strand, within HP15_1229at 1278.237 kb on + strand, within HP15_1229at 1278.467 kb on + strandat 1278.488 kb on - strandat 1278.620 kb on - strand, within HP15_1230at 1278.848 kb on + strand, within HP15_1230at 1278.856 kb on - strand, within HP15_1230at 1278.908 kb on + strand, within HP15_1230at 1278.908 kb on + strand, within HP15_1230at 1278.916 kb on - strand, within HP15_1230at 1278.969 kb on + strand, within HP15_1230at 1278.979 kb on + strand, within HP15_1230at 1279.148 kb on - strand, within HP15_1230at 1279.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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1,276,405 - HP15_1228 0.34 -0.6
1,276,416 - HP15_1228 0.35 -0.4
1,276,700 - HP15_1228 0.56 -0.7
1,276,700 - HP15_1228 0.56 -0.9
1,276,827 - HP15_1228 0.65 -0.3
1,277,048 - HP15_1228 0.82 -2.3
1,277,048 - HP15_1228 0.82 -0.8
1,277,081 - HP15_1228 0.84 +0.2
1,277,153 - HP15_1228 0.90 -0.3
1,277,241 - +1.4
1,277,321 - -0.2
1,277,350 + +1.7
1,277,370 + +0.3
1,277,414 + -0.6
1,277,473 + -0.2
1,277,473 + -0.1
1,277,473 + -0.8
1,277,481 - -0.7
1,277,526 - HP15_1229 0.12 -1.0
1,277,554 + HP15_1229 0.14 +0.4
1,277,570 + HP15_1229 0.16 +0.2
1,277,646 + HP15_1229 0.23 -0.5
1,277,864 - HP15_1229 0.43 -0.1
1,277,932 + HP15_1229 0.50 -1.4
1,277,966 + HP15_1229 0.53 -0.3
1,277,992 - HP15_1229 0.55 -0.8
1,278,010 + HP15_1229 0.57 -1.0
1,278,018 - HP15_1229 0.58 -1.7
1,278,019 - HP15_1229 0.58 +1.1
1,278,034 + HP15_1229 0.59 -3.1
1,278,068 - HP15_1229 0.62 -0.9
1,278,203 - HP15_1229 0.75 -0.8
1,278,237 + HP15_1229 0.78 +0.1
1,278,467 + +0.8
1,278,488 - +0.4
1,278,620 - HP15_1230 0.20 +1.2
1,278,848 + HP15_1230 0.49 -1.2
1,278,856 - HP15_1230 0.50 -0.3
1,278,908 + HP15_1230 0.56 +1.1
1,278,908 + HP15_1230 0.56 +0.1
1,278,916 - HP15_1230 0.57 +0.5
1,278,969 + HP15_1230 0.64 -0.2
1,278,979 + HP15_1230 0.65 -2.0
1,279,148 - HP15_1230 0.86 -0.5
1,279,268 - +0.2

Or see this region's nucleotide sequence