Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1228 and HP15_1229 are separated by 112 nucleotides HP15_1229 and HP15_1230 overlap by 12 nucleotides HP15_1230 and HP15_1231 are separated by 19 nucleotides
HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290
_1228
HP15_1229: HP15_1229 - translation initiation factor, aIF-2BI family, at 1,277,403 to 1,278,467
_1229
HP15_1230: HP15_1230 - hypothetical protein containing helix-turn-helix motif, at 1,278,456 to 1,279,256
_1230
HP15_1231: HP15_1231 - periplasmic tail-specific proteinase, at 1,279,276 to 1,281,399
_1231
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1276.405 kb on - strand, within HP15_1228 at 1276.416 kb on - strand, within HP15_1228 at 1276.700 kb on - strand, within HP15_1228 at 1276.700 kb on - strand, within HP15_1228 at 1276.827 kb on - strand, within HP15_1228 at 1277.048 kb on - strand, within HP15_1228 at 1277.048 kb on - strand, within HP15_1228 at 1277.081 kb on - strand, within HP15_1228 at 1277.153 kb on - strand, within HP15_1228 at 1277.241 kb on - strand at 1277.321 kb on - strand at 1277.350 kb on + strand at 1277.370 kb on + strand at 1277.414 kb on + strand at 1277.473 kb on + strand at 1277.473 kb on + strand at 1277.473 kb on + strand at 1277.481 kb on - strand at 1277.526 kb on - strand, within HP15_1229 at 1277.554 kb on + strand, within HP15_1229 at 1277.570 kb on + strand, within HP15_1229 at 1277.646 kb on + strand, within HP15_1229 at 1277.864 kb on - strand, within HP15_1229 at 1277.932 kb on + strand, within HP15_1229 at 1277.966 kb on + strand, within HP15_1229 at 1277.992 kb on - strand, within HP15_1229 at 1278.010 kb on + strand, within HP15_1229 at 1278.018 kb on - strand, within HP15_1229 at 1278.019 kb on - strand, within HP15_1229 at 1278.034 kb on + strand, within HP15_1229 at 1278.068 kb on - strand, within HP15_1229 at 1278.203 kb on - strand, within HP15_1229 at 1278.237 kb on + strand, within HP15_1229 at 1278.467 kb on + strand at 1278.488 kb on - strand at 1278.620 kb on - strand, within HP15_1230 at 1278.848 kb on + strand, within HP15_1230 at 1278.856 kb on - strand, within HP15_1230 at 1278.908 kb on + strand, within HP15_1230 at 1278.908 kb on + strand, within HP15_1230 at 1278.916 kb on - strand, within HP15_1230 at 1278.969 kb on + strand, within HP15_1230 at 1278.979 kb on + strand, within HP15_1230 at 1279.148 kb on - strand, within HP15_1230 at 1279.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 1,276,405 - HP15_1228 0.34 -0.6 1,276,416 - HP15_1228 0.35 -0.4 1,276,700 - HP15_1228 0.56 -0.7 1,276,700 - HP15_1228 0.56 -0.9 1,276,827 - HP15_1228 0.65 -0.3 1,277,048 - HP15_1228 0.82 -2.3 1,277,048 - HP15_1228 0.82 -0.8 1,277,081 - HP15_1228 0.84 +0.2 1,277,153 - HP15_1228 0.90 -0.3 1,277,241 - +1.4 1,277,321 - -0.2 1,277,350 + +1.7 1,277,370 + +0.3 1,277,414 + -0.6 1,277,473 + -0.2 1,277,473 + -0.1 1,277,473 + -0.8 1,277,481 - -0.7 1,277,526 - HP15_1229 0.12 -1.0 1,277,554 + HP15_1229 0.14 +0.4 1,277,570 + HP15_1229 0.16 +0.2 1,277,646 + HP15_1229 0.23 -0.5 1,277,864 - HP15_1229 0.43 -0.1 1,277,932 + HP15_1229 0.50 -1.4 1,277,966 + HP15_1229 0.53 -0.3 1,277,992 - HP15_1229 0.55 -0.8 1,278,010 + HP15_1229 0.57 -1.0 1,278,018 - HP15_1229 0.58 -1.7 1,278,019 - HP15_1229 0.58 +1.1 1,278,034 + HP15_1229 0.59 -3.1 1,278,068 - HP15_1229 0.62 -0.9 1,278,203 - HP15_1229 0.75 -0.8 1,278,237 + HP15_1229 0.78 +0.1 1,278,467 + +0.8 1,278,488 - +0.4 1,278,620 - HP15_1230 0.20 +1.2 1,278,848 + HP15_1230 0.49 -1.2 1,278,856 - HP15_1230 0.50 -0.3 1,278,908 + HP15_1230 0.56 +1.1 1,278,908 + HP15_1230 0.56 +0.1 1,278,916 - HP15_1230 0.57 +0.5 1,278,969 + HP15_1230 0.64 -0.2 1,278,979 + HP15_1230 0.65 -2.0 1,279,148 - HP15_1230 0.86 -0.5 1,279,268 - +0.2
Or see this region's nucleotide sequence