Strain Fitness in Marinobacter adhaerens HP15 around HP15_1193

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1191 and HP15_1192 are separated by 36 nucleotidesHP15_1192 and HP15_1193 are separated by 97 nucleotidesHP15_1193 and HP15_1194 are separated by 379 nucleotides HP15_1191: HP15_1191 - metallo-beta-lactamase family protein, at 1,225,734 to 1,226,381 _1191 HP15_1192: HP15_1192 - cytochrome c family protein, at 1,226,418 to 1,226,996 _1192 HP15_1193: HP15_1193 - conserved hypothetical protein, at 1,227,094 to 1,227,768 _1193 HP15_1194: HP15_1194 - DNA helicase, at 1,228,148 to 1,229,812 _1194 Position (kb) 1227 1228Strain fitness (log2 ratio) -3 -2 -1 0 1at 1226.174 kb on + strand, within HP15_1191at 1226.249 kb on - strand, within HP15_1191at 1226.317 kb on + strandat 1226.394 kb on - strandat 1226.500 kb on - strand, within HP15_1192at 1226.502 kb on - strand, within HP15_1192at 1226.623 kb on - strand, within HP15_1192at 1226.641 kb on + strand, within HP15_1192at 1226.726 kb on + strand, within HP15_1192at 1226.812 kb on - strand, within HP15_1192at 1226.931 kb on - strand, within HP15_1192at 1227.012 kb on + strandat 1227.134 kb on + strandat 1227.150 kb on + strandat 1227.281 kb on + strand, within HP15_1193at 1227.323 kb on - strand, within HP15_1193at 1227.397 kb on - strand, within HP15_1193at 1227.442 kb on + strand, within HP15_1193at 1227.450 kb on - strand, within HP15_1193at 1227.557 kb on - strand, within HP15_1193at 1227.783 kb on - strandat 1227.858 kb on - strandat 1228.117 kb on - strandat 1228.244 kb on - strandat 1228.250 kb on - strandat 1228.272 kb on - strandat 1228.294 kb on - strandat 1228.388 kb on + strand, within HP15_1194at 1228.389 kb on + strand, within HP15_1194at 1228.474 kb on + strand, within HP15_1194at 1228.613 kb on + strand, within HP15_1194at 1228.664 kb on + strand, within HP15_1194at 1228.687 kb on - strand, within HP15_1194

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
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1,226,174 + HP15_1191 0.68 -0.9
1,226,249 - HP15_1191 0.79 +0.9
1,226,317 + +0.1
1,226,394 - +0.4
1,226,500 - HP15_1192 0.14 +0.4
1,226,502 - HP15_1192 0.15 -0.4
1,226,623 - HP15_1192 0.35 +0.9
1,226,641 + HP15_1192 0.39 +0.6
1,226,726 + HP15_1192 0.53 +0.2
1,226,812 - HP15_1192 0.68 +1.4
1,226,931 - HP15_1192 0.89 +0.2
1,227,012 + +0.1
1,227,134 + -0.3
1,227,150 + +0.7
1,227,281 + HP15_1193 0.28 +1.6
1,227,323 - HP15_1193 0.34 +1.4
1,227,397 - HP15_1193 0.45 -3.4
1,227,442 + HP15_1193 0.52 -1.8
1,227,450 - HP15_1193 0.53 +0.4
1,227,557 - HP15_1193 0.69 +0.3
1,227,783 - -2.4
1,227,858 - +0.1
1,228,117 - -0.2
1,228,244 - -0.4
1,228,250 - -0.7
1,228,272 - +0.3
1,228,294 - +0.5
1,228,388 + HP15_1194 0.14 -0.2
1,228,389 + HP15_1194 0.14 +0.8
1,228,474 + HP15_1194 0.20 -2.7
1,228,613 + HP15_1194 0.28 +0.1
1,228,664 + HP15_1194 0.31 -1.2
1,228,687 - HP15_1194 0.32 +0.1

Or see this region's nucleotide sequence