Strain Fitness in Marinobacter adhaerens HP15 around HP15_1021

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1020 and HP15_1021 are separated by 154 nucleotidesHP15_1021 and HP15_1022 overlap by 16 nucleotides HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071 _1020 HP15_1021: HP15_1021 - tRNA pseudouridine synthase C, at 1,037,226 to 1,037,969 _1021 HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810 _1022 Position (kb) 1037 1038Strain fitness (log2 ratio) -3 -2 -1 0 1at 1036.426 kb on + strand, within HP15_1020at 1036.432 kb on + strand, within HP15_1020at 1036.435 kb on - strand, within HP15_1020at 1036.536 kb on + strand, within HP15_1020at 1036.613 kb on + strand, within HP15_1020at 1036.621 kb on - strand, within HP15_1020at 1036.783 kb on + strand, within HP15_1020at 1036.809 kb on - strand, within HP15_1020at 1036.845 kb on - strand, within HP15_1020at 1036.850 kb on + strand, within HP15_1020at 1036.881 kb on + strand, within HP15_1020at 1037.214 kb on - strandat 1037.224 kb on - strandat 1037.264 kb on + strandat 1037.264 kb on + strandat 1037.264 kb on + strandat 1037.276 kb on + strandat 1037.383 kb on - strand, within HP15_1021at 1037.554 kb on + strand, within HP15_1021at 1037.603 kb on - strand, within HP15_1021at 1037.748 kb on - strand, within HP15_1021at 1037.834 kb on + strand, within HP15_1021at 1037.911 kb on + strandat 1037.980 kb on + strandat 1037.988 kb on - strandat 1037.988 kb on - strandat 1038.016 kb on + strandat 1038.135 kb on - strandat 1038.194 kb on + strand, within HP15_1022at 1038.207 kb on + strand, within HP15_1022at 1038.383 kb on - strand, within HP15_1022at 1038.426 kb on + strand, within HP15_1022at 1038.540 kb on - strand, within HP15_1022at 1038.540 kb on - strand, within HP15_1022at 1038.572 kb on + strand, within HP15_1022at 1038.796 kb on - strand, within HP15_1022at 1038.807 kb on + strand, within HP15_1022at 1038.915 kb on - strand, within HP15_1022

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
remove
1,036,426 + HP15_1020 0.60 -3.6
1,036,432 + HP15_1020 0.61 -0.7
1,036,435 - HP15_1020 0.61 -0.3
1,036,536 + HP15_1020 0.67 -0.4
1,036,613 + HP15_1020 0.72 +0.9
1,036,621 - HP15_1020 0.72 -1.7
1,036,783 + HP15_1020 0.82 -0.8
1,036,809 - HP15_1020 0.84 -1.1
1,036,845 - HP15_1020 0.86 +0.3
1,036,850 + HP15_1020 0.86 +0.3
1,036,881 + HP15_1020 0.88 -0.5
1,037,214 - -0.3
1,037,224 - +0.2
1,037,264 + -0.2
1,037,264 + +0.0
1,037,264 + -0.4
1,037,276 + -0.6
1,037,383 - HP15_1021 0.21 -0.4
1,037,554 + HP15_1021 0.44 +1.4
1,037,603 - HP15_1021 0.51 +0.6
1,037,748 - HP15_1021 0.70 +0.3
1,037,834 + HP15_1021 0.82 -1.7
1,037,911 + -0.3
1,037,980 + +0.1
1,037,988 - -0.1
1,037,988 - +0.1
1,038,016 + +0.2
1,038,135 - -0.6
1,038,194 + HP15_1022 0.13 -0.1
1,038,207 + HP15_1022 0.14 -0.1
1,038,383 - HP15_1022 0.23 +0.3
1,038,426 + HP15_1022 0.25 -1.2
1,038,540 - HP15_1022 0.32 -0.1
1,038,540 - HP15_1022 0.32 +0.5
1,038,572 + HP15_1022 0.33 -0.1
1,038,796 - HP15_1022 0.45 +0.3
1,038,807 + HP15_1022 0.46 -0.2
1,038,915 - HP15_1022 0.52 +0.1

Or see this region's nucleotide sequence