Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1020 and HP15_1021 are separated by 154 nucleotides HP15_1021 and HP15_1022 overlap by 16 nucleotides
HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071
_1020
HP15_1021: HP15_1021 - tRNA pseudouridine synthase C, at 1,037,226 to 1,037,969
_1021
HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810
_1022
Position (kb)
1037
1038 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1036.426 kb on + strand, within HP15_1020 at 1036.432 kb on + strand, within HP15_1020 at 1036.435 kb on - strand, within HP15_1020 at 1036.536 kb on + strand, within HP15_1020 at 1036.613 kb on + strand, within HP15_1020 at 1036.621 kb on - strand, within HP15_1020 at 1036.783 kb on + strand, within HP15_1020 at 1036.809 kb on - strand, within HP15_1020 at 1036.845 kb on - strand, within HP15_1020 at 1036.850 kb on + strand, within HP15_1020 at 1036.881 kb on + strand, within HP15_1020 at 1037.214 kb on - strand at 1037.224 kb on - strand at 1037.264 kb on + strand at 1037.264 kb on + strand at 1037.264 kb on + strand at 1037.276 kb on + strand at 1037.383 kb on - strand, within HP15_1021 at 1037.554 kb on + strand, within HP15_1021 at 1037.603 kb on - strand, within HP15_1021 at 1037.748 kb on - strand, within HP15_1021 at 1037.834 kb on + strand, within HP15_1021 at 1037.911 kb on + strand at 1037.980 kb on + strand at 1037.988 kb on - strand at 1037.988 kb on - strand at 1038.016 kb on + strand at 1038.135 kb on - strand at 1038.194 kb on + strand, within HP15_1022 at 1038.207 kb on + strand, within HP15_1022 at 1038.383 kb on - strand, within HP15_1022 at 1038.426 kb on + strand, within HP15_1022 at 1038.540 kb on - strand, within HP15_1022 at 1038.540 kb on - strand, within HP15_1022 at 1038.572 kb on + strand, within HP15_1022 at 1038.796 kb on - strand, within HP15_1022 at 1038.807 kb on + strand, within HP15_1022 at 1038.915 kb on - strand, within HP15_1022
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 7.5 mM remove 1,036,426 + HP15_1020 0.60 -3.6 1,036,432 + HP15_1020 0.61 -0.7 1,036,435 - HP15_1020 0.61 -0.3 1,036,536 + HP15_1020 0.67 -0.4 1,036,613 + HP15_1020 0.72 +0.9 1,036,621 - HP15_1020 0.72 -1.7 1,036,783 + HP15_1020 0.82 -0.8 1,036,809 - HP15_1020 0.84 -1.1 1,036,845 - HP15_1020 0.86 +0.3 1,036,850 + HP15_1020 0.86 +0.3 1,036,881 + HP15_1020 0.88 -0.5 1,037,214 - -0.3 1,037,224 - +0.2 1,037,264 + -0.2 1,037,264 + +0.0 1,037,264 + -0.4 1,037,276 + -0.6 1,037,383 - HP15_1021 0.21 -0.4 1,037,554 + HP15_1021 0.44 +1.4 1,037,603 - HP15_1021 0.51 +0.6 1,037,748 - HP15_1021 0.70 +0.3 1,037,834 + HP15_1021 0.82 -1.7 1,037,911 + -0.3 1,037,980 + +0.1 1,037,988 - -0.1 1,037,988 - +0.1 1,038,016 + +0.2 1,038,135 - -0.6 1,038,194 + HP15_1022 0.13 -0.1 1,038,207 + HP15_1022 0.14 -0.1 1,038,383 - HP15_1022 0.23 +0.3 1,038,426 + HP15_1022 0.25 -1.2 1,038,540 - HP15_1022 0.32 -0.1 1,038,540 - HP15_1022 0.32 +0.5 1,038,572 + HP15_1022 0.33 -0.1 1,038,796 - HP15_1022 0.45 +0.3 1,038,807 + HP15_1022 0.46 -0.2 1,038,915 - HP15_1022 0.52 +0.1
Or see this region's nucleotide sequence