Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gyrB and SO0012 are separated by 73 nucleotides SO0012 and SO0013 are separated by 519 nucleotides
SO0011: gyrB - DNA gyrase, B subunit (NCBI ptt file), at 10,638 to 13,055
gyrB
SO0012: SO0012 - glutathione S-transferase family protein (NCBI ptt file), at 13,129 to 13,791
SO0012
SO0013: SO0013 - hypothetical protein (NCBI ptt file), at 14,311 to 15,111
SO0013
Position (kb) 13
14 Strain fitness (log2 ratio) -1
0
1 at 13.147 kb on - strand at 13.232 kb on - strand, within SO0012 at 13.289 kb on + strand, within SO0012 at 13.377 kb on + strand, within SO0012 at 13.427 kb on - strand, within SO0012 at 13.542 kb on + strand, within SO0012 at 13.550 kb on - strand, within SO0012 at 13.635 kb on - strand, within SO0012 at 13.778 kb on + strand at 13.864 kb on - strand at 13.955 kb on + strand at 13.977 kb on - strand at 14.030 kb on - strand at 14.116 kb on + strand at 14.143 kb on - strand at 14.161 kb on + strand at 14.219 kb on + strand at 14.224 kb on + strand at 14.227 kb on - strand at 14.294 kb on + strand at 14.294 kb on + strand at 14.295 kb on + strand at 14.295 kb on - strand at 14.306 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.328 kb on + strand at 14.336 kb on - strand at 14.336 kb on - strand at 14.336 kb on - strand at 14.336 kb on - strand at 14.383 kb on + strand at 14.410 kb on + strand, within SO0013 at 14.463 kb on + strand, within SO0013 at 14.468 kb on + strand, within SO0013 at 14.468 kb on + strand, within SO0013 at 14.468 kb on + strand, within SO0013 at 14.468 kb on + strand, within SO0013 at 14.468 kb on + strand, within SO0013 at 14.476 kb on - strand, within SO0013 at 14.476 kb on - strand, within SO0013 at 14.476 kb on - strand, within SO0013 at 14.487 kb on + strand, within SO0013 at 14.531 kb on + strand, within SO0013 at 14.531 kb on + strand, within SO0013 at 14.531 kb on + strand, within SO0013 at 14.531 kb on + strand, within SO0013 at 14.539 kb on - strand, within SO0013 at 14.539 kb on - strand, within SO0013 at 14.551 kb on - strand, within SO0013
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 13,147 - -0.3 13,232 - SO0012 0.16 +0.8 13,289 + SO0012 0.24 -0.3 13,377 + SO0012 0.37 -0.8 13,427 - SO0012 0.45 -0.1 13,542 + SO0012 0.62 +0.5 13,550 - SO0012 0.63 +0.3 13,635 - SO0012 0.76 +1.3 13,778 + +0.8 13,864 - +0.1 13,955 + -0.2 13,977 - -0.5 14,030 - -0.5 14,116 + -0.7 14,143 - -0.0 14,161 + -1.3 14,219 + -0.2 14,224 + +1.7 14,227 - +0.4 14,294 + +0.1 14,294 + -0.5 14,295 + +0.5 14,295 - +0.0 14,306 + -0.2 14,328 + +0.2 14,328 + +0.6 14,328 + -0.8 14,328 + +0.4 14,328 + -0.5 14,336 - -1.0 14,336 - -0.1 14,336 - -0.9 14,336 - +0.1 14,383 + +0.0 14,410 + SO0013 0.12 -0.5 14,463 + SO0013 0.19 -0.5 14,468 + SO0013 0.20 -0.2 14,468 + SO0013 0.20 +0.1 14,468 + SO0013 0.20 -0.2 14,468 + SO0013 0.20 -0.7 14,468 + SO0013 0.20 -0.3 14,476 - SO0013 0.21 -0.1 14,476 - SO0013 0.21 -0.3 14,476 - SO0013 0.21 -0.6 14,487 + SO0013 0.22 -0.5 14,531 + SO0013 0.27 -0.8 14,531 + SO0013 0.27 +0.3 14,531 + SO0013 0.27 -0.4 14,531 + SO0013 0.27 +0.1 14,539 - SO0013 0.28 -0.2 14,539 - SO0013 0.28 -0.6 14,551 - SO0013 0.30 -0.0
Or see this region's nucleotide sequence